CmaCh16G010980 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G010980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 8458267 .. 8460905 (-)
RNA-Seq ExpressionCmaCh16G010980
SyntenyCmaCh16G010980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTTGGGGAAGTTTCAGGATCCAAGTGGGAGAGGAATGGCAGGACCACGGGGAGCGATGGTCTGAGGCTCTGATGAGGAGATCAGAGGAAGCAATGTTGGTTGCTAAGATCAGAGTAGAGCAACGTAGGTGTGAGATCCCGCATCGGTTGGAGAGAAGAACGATGAATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGAGACGTTTTAAAAACAGTGAAGCTGACGACGATACGTAACAAGCCGAGATAAATAAGCTAGCTAATGGAGCTCATACCATTGATAGGTAATGATATTTGACTCTTTCATTTGTTGGTAACCAGGGCCATGGATGAACAGACAATAAAATAGTCAAGCTGTCTAGGGTGGGTCTGCTAGGGAGAGGTTTTTACACCCTTACAAAGACCTTTGTCCTCCTCTTCCACTGATGTGAGATCTCACAATCCACCCCTCTTCGAGGTCTAGTGTCCTCGCTAGCGCTCGTTCTTCTCTCCAATTGATGTGTGATCTCACAATCTACCTCCCTTCGGCGCCCAACGTCCTTGCTGGCACATCGTCCGGTGTTCACCCTCTTCAGGGCTCAACGTCTTCGCTGGCACGCTACCCTGCCAAGAAGGGTGGATTGTGAGATCCCATATCAGTTGGAGAGGGAAACAAAACATTCTTTATAAGGGTGTGTAAACCTCTCCCTAGCAGACACGTCTTAAAAACCTTGAGGGAAAACTTAAAGAAAACAATATTTTCTAGCAGTGGGGACAATTACAAAAATAGAATTTATAGGTCCGGCCTCACCCTCACGGGGAAGACAAAGACAAGCTGAGTAATACACTTTCTAGTTTCTATTAATGGTTCTCATCTATGATGCCAAATACTAAATATTGGGAAATTTTGTTAGCATAATAAGATGATTCTTTCAATTGCTTAATGTTTTTTCACCACATGCTACCTTTTGTTTTATTCTTATTTCAAACTCTCAGCTCTTATTCAGATCACGAAACTGGAAAGAAACGAGATGATGCAAGTGCGAACAAGCTGATGATGATCCATGATGAGATGATGAATGCAATTAAAAGACTCGGCTGAACGATGTCGTAATCCTGGTAAGATTAAAAAATGATCTCTGTGCTAACTTTTAATGGCAAGGGTAGATTCTTCGATGAGTATGGGGATATAATTGTGTGCCACACTCCATGAGTTTGGTATTAGCTTTTTGCAGTTCCTTAAGCTTTTGTTTCTCACAGAAGAAAAGAAGTTACTCAAATGGATAGGAAATTGGGTTCCTGGTATTGGCATCTGCCTCAACTGAAACCTTGTAAGTTCTACTCATGTTCTTTCTGTCTGATGAATATTTTTCCGTTTTTCAACTTAGTTTCTGAATGTGTGAATATTGAGCGGTAGAAGTATGGAGATTTGTACGTACATCTGATTTCGAAGTCGAAAAAAAATGTGCCTTAACTTGTTAAGCTATTAAGCTATTTTTACTAGAGATGTTCATTTTACTTGTGGGACTAGAAGGGGCAAGGGAATTTCCTGTTTAGACGAGAATGAGGAAGGGAATGAGAAACTTTTTTTTATGCATTAGATTTTTTTTTTTTTAATGGTTAAAGACTATTATGTAATATTAACATTTGAATTTTTAAAAATTACTTTTCGGGCCGTTTGAATATGAAATATATTGATTTATTTGAATTTTTTCAATAAAAATTATATTGAAAAAAATGAAAACTTTAAAATAACTATTTTTATAAAAGAATAATAAACAAAAAAAAAAAAAAATTATTTGCTGTGAGATTTGATTCTCGCAAATTAACGTGTATTCAATCTAAATTTTGCAGGGATAAAGATAGCGAAGGCTTCCTTATCTTTGTCTTCGTCCCGACTTGTAGACATCTCTAATTTTTTATTCCATTTGAAATCAGCTAAATAAATTTATTCTTCTTCTTCAAAAATCACATCAAAGTAGTGAGAAAAATTATCACGTGATTCTTTCTAAATATGCAGAAGACAAGCGGATGAAAAGTCACAAAGCTCTATGAAAGGTCTTGAAGTTAGATCCTCGGGACTGAATATTCGGGACTGAATATTACCCAAAGCTTCATGAAAGGTCTTTTGAAGTTAGATCCTCGGGACCGAATATTACTCAAAGCTCCATGAAAGGTCTTGAAGTTAGATCCTAGGGACCGAATATTACCCAAAGCTCCATGAAAGGTCTTGAACTTAGATCCTAGGGATCGAATATTACCCGTCTCCCATTTATAGATGACATACACTCCTTTTTTATCCTACAAAAGGGGAGAATGAATAAATTCTTTTTTTTGTAGTTCATTCTTTTGAGAGAGAGAGCATTGGGTCATAATACCAAGTTAGAAGATGACCCAACCCTTCTATCTAACAAACGGACCATATTTGTCGTTCAAGCCACACTTTCTGACCTCCCTAGATGCTAGAGTCCCTTTTTGACTTACTCACAAAGGTTAAGGTCTATCCTTTGGAAAGAGACCACTAGTGGCAACTATAAACATCTTGTTTTTCAACGCTCGTTATCCTATTATTAACCATGATTTGGTCTCCATTGTATTAAACAACAAAGTTGTTAGCTCTCTCGCATTTTATTATTGATACAAAAGTTGG

mRNA sequence

ATGAATACTTGGGGAAGTTTCAGGATCCAAGTGGGAGAGGAATGGCAGGACCACGGGGAGCGATGGTCTGAGGCTCTGATGAGGAGATCAGAGGAAGCAATGTTGGTTGCTAAGATCAGAGTAGAGCAACGTAGCTCTTATTCAGATCACGAAACTGGAAAGAAACGAGATGATGCAAGTGCGAACAAGCTGATGATGATCCATGATGAGATGATGAATGCAATTAAAAGACTCGGCTGAACGATGTCGTAATCCTGAAGAAAAGAAGTTACTCAAATGGATAGGAAATTGGGTTCCTGGTATTGGCATCTGCCTCAACTGAAACCTTGGATAAAGATAGCGAAGGCTTCCTTATCTTTGTCTTCGTCCCGACTTAAGACAAGCGGATGAAAAGTCACAAAGCTCTATGAAAGGTCTTGAAGTTAGATCCTCGGGACTGAATATTCGGGACTGAATATTACCCAAAGCTTCATGAAAGGTCTTTTGAAGTTAGATCCTCGGGACCGAATATTACTCAAAGCTCCATGAAAGGTCTTGAAGTTAGATCCTAGGGACCGAATATTACCCAAAGCTCCATGAAAGGTCTTGAACTTAGATCCTAGGGATCGAATATTACCCGTCTCCCATTTATAGATGACATACACTCCTTTTTTATCCTACAAAAGGGGAGAATGAATAAATTCTTTTTTTTGTAGTTCATTCTTTTGAGAGAGAGAGCATTGGGTCATAATACCAAGTTAGAAGATGACCCAACCCTTCTATCTAACAAACGGACCATATTTGTCGTTCAAGCCACACTTTCTGACCTCCCTAGATGCTAGAGTCCCTTTTTGACTTACTCACAAAGGTTAAGGTCTATCCTTTGGAAAGAGACCACTAGTGGCAACTATAAACATCTTGTTTTTCAACGCTCGTTATCCTATTATTAACCATGATTTGGTCTCCATTGTATTAAACAACAAAGTTGTTAGCTCTCTCGCATTTTATTATTGATACAAAAGTTGG

Coding sequence (CDS)

ATGAATACTTGGGGAAGTTTCAGGATCCAAGTGGGAGAGGAATGGCAGGACCACGGGGAGCGATGGTCTGAGGCTCTGATGAGGAGATCAGAGGAAGCAATGTTGGTTGCTAAGATCAGAGTAGAGCAACGTAGCTCTTATTCAGATCACGAAACTGGAAAGAAACGAGATGATGCAAGTGCGAACAAGCTGATGATGATCCATGATGAGATGATGAATGCAATTAAAAGACTCGGCTGA

Protein sequence

MNTWGSFRIQVGEEWQDHGERWSEALMRRSEEAMLVAKIRVEQRSSYSDHETGKKRDDASANKLMMIHDEMMNAIKRLG
Homology
[Close]
BLAST of CmaCh16G010980 vs. TAIR 10
Match: AT5G47090.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 7.0e-05
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 5   GSFRIQVGEEWQDHGERWSEALMRRSEEAMLVAKIRVEQRS---SYSDHETGKKRDDA 60
           G F+  +G      GERWSE LMRR+EEA+LV +IR EQ+    S SD    +K +++
Sbjct: 150 GKFQDVMGRNMARPGERWSETLMRRAEEAVLVTRIREEQQRLGVSESDWVGNEKMEES 207

The following BLAST results are available for this feature:
BLAST of CmaCh16G010980 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh16G010980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47090.17.0e-0544.83unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G010980.1CmaCh16G010980.1mRNA