Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGCATTTCACACAAACAATCTCCAAAAACAAAAACAAAAACAAAAAAAAGACAACAAAACAAAACAAAAAAAAAACAAAACAAAACAACAAAGCTGAAGAACAAGAAGATGGGTATGAACATGAGGTCGATAACTCTATCGTTCGTGTTATTATTATACGTTTCTATAAGAACAGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGGTAAAAACTAATATCAAATATATCGATGTTTATATATTTTTACGATGATAAATCTTTTCTAATTATGTTCGAGATTTTAAACAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACATGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGGCAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGGTAAATACACTTAAATTAACTATTTGCAAATTTTAATTTATTGTTTATACTCATGCATGATCGTTTTTTTACAGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTCGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTTAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTCTGGATCAAGAATACTGTCCATACAACAAATGTAACAGGAAGGTACTGGAATTACGAAATCTTTTATTTTTTTTATTTTATTTTAATTAGAAACAATTTCATTAAAATTGTGTTTATTTGATGTTTTTCAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGCAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGGTTGTTACTGGGATACAAAAACCTATTATTTGTCCTTCGTGAGCGTAAGCTATTTCTACAAAAGATTATCGTTTGAGGAAGAGATTTAATTATGTAGTTTTCTTTTACGTTCTAGAGAATAAATTTGGAGTGAACAAAGGGTTCTCCTTCGTTGTATTTATAAATGAAGAGGAATAAAGCTTTGGTTTGTGTTGATTTTTCATGTGAAGCCGTTGTATTGAGATCACTTATAATTGGATTTGTAGCATTTTCGATCAAACGGGTGATTTTCTCATCTACTACACATCTCATACTACCCCTGTGAACTTAAAATTCATAATCCCA
mRNA sequence
CAAGCATTTCACACAAACAATCTCCAAAAACAAAAACAAAAACAAAAAAAAGACAACAAAACAAAACAAAAAAAAAACAAAACAAAACAACAAAGCTGAAGAACAAGAAGATGGGTATGAACATGAGGTCGATAACTCTATCGTTCGTGTTATTATTATACGTTTCTATAAGAACAGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACATGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGGCAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTCGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTTAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTCTGGATCAAGAATACTGTCCATACAACAAATGTAACAGGAAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGCAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGGTTGTTACTGGGATACAAAAACCTATTATTTGTCCTTCGTGAGCGTAAGCTATTTCTACAAAAGATTATCGTTTGAGGAAGAGATTTAATTATGTAGTTTTCTTTTACGTTCTAGAGAATAAATTTGGAGTGAACAAAGGGTTCTCCTTCGTTGTATTTATAAATGAAGAGGAATAAAGCTTTGGTTTGTGTTGATTTTTCATGTGAAGCCGTTGTATTGAGATCACTTATAATTGGATTTGTAGCATTTTCGATCAAACGGGTGATTTTCTCATCTACTACACATCTCATACTACCCCTGTGAACTTAAAATTCATAATCCCA
Coding sequence (CDS)
ATGGGTATGAACATGAGGTCGATAACTCTATCGTTCGTGTTATTATTATACGTTTCTATAAGAACAGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACATGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGGCAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTCGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTTAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTCTGGATCAAGAATACTGTCCATACAACAAATGTAACAGGAAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGCAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGGTTGTTACTGGGATACAAAAACCTATTATTTGTCCTTCGTGA
Protein sequence
MGMNMRSITLSFVLLLYVSIRTAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQGTIMAPVDITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQKPIICPS
Homology
BLAST of CmaCh16G010560 vs. ExPASy Swiss-Prot
Match:
P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)
HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-122
Identity = 203/355 (57.18%), Postives = 265/355 (74.65%), Query Frame = 0
Query: 42 DITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQGTIMAPVD--- 101
D TQ L AWK+ACAS S +++PK + +G+ITL GPCKS I + +QGT+ AP D
Sbjct: 1 DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSK 60
Query: 102 ITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKN-PKCARIPMSLKFSFVKDSIV 161
I G GWI +D +++ GGGVFDGQG+ AW +NDCHKN P C + M+L+ V +SI+
Sbjct: 61 IKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSIL 120
Query: 162 RDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDD 221
RD+T+ DSKNFHVN++GCKNLTF+ I+A TSIN+DGIH+GR DGVNIIN+ I TGDD
Sbjct: 121 RDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDD 180
Query: 222 CISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTW 281
CISLGDGS+ + ITN+TCGPGHGISVGSLG+Y EE V G+YVKNCT+ G+ NG+RIKTW
Sbjct: 181 CISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTW 240
Query: 282 PASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSA 341
P S G ++MH++DI + V PI++DQ YCPYN+C ++PS +K+SK+SFKNI+G++
Sbjct: 241 PKS-EPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTS 300
Query: 342 GNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQKPIIC 393
AVKL+CS +PC V L+DID+TY+G+ GP S C N+KP + G Q P IC
Sbjct: 301 TTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAIC 354
BLAST of CmaCh16G010560 vs. ExPASy Swiss-Prot
Match:
Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)
HSP 1 Score: 419.1 bits (1076), Expect = 5.6e-116
Identity = 196/375 (52.27%), Postives = 263/375 (70.13%), Query Frame = 0
Query: 21 RTAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGP 80
R QSS VF+V YGAK DI+Q + KAWK ACAS S ++IPK Y +G + + GP
Sbjct: 1 RGVQSSGSVFNVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGP 60
Query: 81 CK-SPIDIVVQGTIMAPVD---ITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHK 140
CK S I + G + AP D DGW+ F +D ++++G G DGQGQ AW +N+C K
Sbjct: 61 CKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDK 120
Query: 141 NPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDG 200
NP C M+L+F F+K ++VRDITS +SK FH+N+L C+++TF HVT+ APGTSIN+DG
Sbjct: 121 NPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDG 180
Query: 201 IHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVA 260
IH+G GV I N+ I TGDDCIS+G GS+ VTIT V CGPGHGIS+GSLG+Y E+ V
Sbjct: 181 IHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVR 240
Query: 261 GLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCN 320
G+ VK CT GT NG+R+KTWP SP G+ TD+ ++D+ + +VQNP+ILDQEYCPY +C+
Sbjct: 241 GITVKGCTFSGTMNGVRVKTWPNSP-PGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCS 300
Query: 321 RKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSEC 380
R+ PS+IK+S ++F NIRG++ VAV + CS PC ++ + +I+++Y G GP S C
Sbjct: 301 RQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTC 360
Query: 381 SNVKPVVTGIQKPII 392
SNVKP +G Q P I
Sbjct: 361 SNVKPTFSGKQVPAI 374
BLAST of CmaCh16G010560 vs. ExPASy Swiss-Prot
Match:
Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)
HSP 1 Score: 414.1 bits (1063), Expect = 1.8e-114
Identity = 200/389 (51.41%), Postives = 279/389 (71.72%), Query Frame = 0
Query: 5 MRSITLSFVLLLYVSIRTAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLI 64
M+ T V L+++ A S GV D++ +G KPN+DI Q L AW +ACAS +K++
Sbjct: 1 MKFSTAIIVSFLFIADFCAAQS-GVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKIV 60
Query: 65 IPKETYMLGVITLLGPCKSPIDIVVQGTIMAPVD---ITG-DGWIQFRYVDKISLTGGGV 124
IP TY L I L GPCK+PI++ V GTI AP D I G + W +F Y+D ++L+G GV
Sbjct: 61 IPAGTYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGV 120
Query: 125 FDGQG----QKAWERNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCK 184
FDGQG +KA + +++ M+ F+FV +SIVR +TSKDSKNFHV + GCK
Sbjct: 121 FDGQGATVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCK 180
Query: 185 NLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCG 244
N+TFD TI APG S N+DGIHMG+ V I+N+ IGTGDDC+S+GDGS+++T+ V CG
Sbjct: 181 NITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCG 240
Query: 245 PGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVL 304
PGHG+SVGSLG++ EE V G+ VKNCTL T NG+RIKTWP +P T +V+D+H+EDI +
Sbjct: 241 PGHGLSVGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITM 300
Query: 305 VDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDV 364
+V+NP+I+DQEY P+N+C++K PSKIK+SK+SFKN++G++G A V L+CS+ PC+ V
Sbjct: 301 TNVKNPVIIDQEYYPWNQCSKKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGV 360
Query: 365 TLSDIDITYTGREGPVVSECSNVKPVVTG 386
L+++D+ + G P ++C+NVKP+VTG
Sbjct: 361 ELNNVDLKFNG--APTTAKCTNVKPLVTG 386
BLAST of CmaCh16G010560 vs. ExPASy Swiss-Prot
Match:
P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)
HSP 1 Score: 408.3 bits (1048), Expect = 9.9e-113
Identity = 185/364 (50.82%), Postives = 257/364 (70.60%), Query Frame = 0
Query: 31 DVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQ 90
+V T G PN+DIT + KA+ AC +P S+++IPK + LG + GPCKSPI+ +Q
Sbjct: 23 EVFTAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKGDFKLGETVMTGPCKSPIEFTLQ 82
Query: 91 GTIMAPVDIT--GDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLK 150
G + T D W+ F ++ L GGG FDG+G AW+ N+CHK +C ++P+S++
Sbjct: 83 GNVKTDGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLPISVR 142
Query: 151 FSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNII 210
F FV ++ ++D+TS D+KNFH N++ KN+TFD++ I AP S N+DGIH+GRC+GV I+
Sbjct: 143 FDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKIL 202
Query: 211 NSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGT 270
N+ I TGDDCIS+GDG + + I V CGPGHGISVGSLG+Y E+ V + VKNCTL GT
Sbjct: 203 NTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGT 262
Query: 271 TNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKV 330
+NGLRIKTWP++ T + +H+EDI+L V NPI++DQEYCP+N+CN+ PS IK+ +
Sbjct: 263 SNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDI 322
Query: 331 SFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQK 390
+F+NIRG++ N AVKLLCS +PCE+V + DI+I YTG +GP EC+NV P + G Q
Sbjct: 323 TFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPKLVGAQN 382
Query: 391 PIIC 393
P C
Sbjct: 383 PKAC 386
BLAST of CmaCh16G010560 vs. ExPASy Swiss-Prot
Match:
Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)
HSP 1 Score: 401.0 bits (1029), Expect = 1.6e-110
Identity = 189/384 (49.22%), Postives = 265/384 (69.01%), Query Frame = 0
Query: 12 FVLLLYVSIRTAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYM 71
F L+L +S GVFD+T YGA NADI++ L A+K+AC S S ++IPK T+
Sbjct: 9 FALVLLFLAHFGESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFT 68
Query: 72 LGVITLLGPCKSPIDIVVQGTIMAPVD---ITGDGWIQFRYVDKISLTGGGVFDGQGQKA 131
+ + L GPCKSP+++ +Q T+ AP D + W+ +D+ +++GGG+ DGQ A
Sbjct: 69 MNQVKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAA 128
Query: 132 WERNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAP 191
WE C ++ KC ++P +L F+ + +S ++DIT+ DSK+FHVN+ CKNLTF ++AP
Sbjct: 129 WE---CKQSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAP 188
Query: 192 GTSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQ 251
S N+DGIH+ R VNI +S TGDDCIS+GD + ++ IT VTCGPGHGISVGSLG
Sbjct: 189 ANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGG 248
Query: 252 YLVEEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQE 311
E+PV G++V+NCT T NG+RIKTWPAS G V D+H+EDI++ +V NP+++DQ
Sbjct: 249 NPDEKPVVGVFVRNCTFTNTDNGVRIKTWPAS-HPGVVNDVHFEDIIVQNVSNPVVIDQV 308
Query: 312 YCPYNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGR 371
YCP+NKCN+ +PS++KISKVSF+NI+G++ AV LL S PCE + + DIDITY+G+
Sbjct: 309 YCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGK 368
Query: 372 EGPVVSECSNVKPVVTGIQKPIIC 393
EGP S C N+KP + G Q P +C
Sbjct: 369 EGPAKSSCENIKPSLKGKQNPPVC 388
BLAST of CmaCh16G010560 vs. TAIR 10
Match:
AT5G48140.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 417.5 bits (1072), Expect = 1.2e-116
Identity = 188/357 (52.66%), Postives = 261/357 (73.11%), Query Frame = 0
Query: 39 PNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQGTIMAPVD 98
P +DIT L KA+ +AC P +S ++IPK Y LG I ++GPCK+PI I + GT+ A +
Sbjct: 32 PGSDITNALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGN 91
Query: 99 ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLKFSFVKDSIV 158
G + W+ FR ++ L GGGVFDG+G AW N+CHK C ++P+S++F FV D+ +
Sbjct: 92 ANGKEKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFDFVTDAKI 151
Query: 159 RDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDD 218
R ITS D+K+FH+N++G KN+TF+ V I AP S N+DGIH+GR DG+ IINS I TGDD
Sbjct: 152 RGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDD 211
Query: 219 CISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTW 278
C+S+GDG + + + VTCGPGHGIS+GSLG+Y EE V+G+ + NCTL T NGLRIKTW
Sbjct: 212 CVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTW 271
Query: 279 PASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSA 338
P++ T + +D+H+E+I+L +V NPI++DQEYCP+N+CN++ PS IK++ +SFK IRG++
Sbjct: 272 PSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTS 331
Query: 339 GNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQKPIICPS 395
GN AVKLLCS YPC++V + D++I YTG +GP +CSNV P + G Q P C S
Sbjct: 332 GNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKACSS 388
BLAST of CmaCh16G010560 vs. TAIR 10
Match:
AT3G07820.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 416.8 bits (1070), Expect = 2.0e-116
Identity = 193/364 (53.02%), Postives = 263/364 (72.25%), Query Frame = 0
Query: 31 DVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPIDIVVQ 90
+V T G+ +DITQ L KA+ AC S SK++IPK + LG I + GPCK+PI++ +Q
Sbjct: 23 EVFTIGSSSGSDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQ 82
Query: 91 GTIMAPVD-ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLK 150
GT+ A + I G + W+ F +D L GGG FDG+G AW N+CHK +C ++P+S++
Sbjct: 83 GTVKADGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIR 142
Query: 151 FSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNII 210
F F+ +S +RDI+S D+KNFH+N+LG KN+T +++ I AP S N+DGIH+GR DGV I+
Sbjct: 143 FDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKIL 202
Query: 211 NSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGT 270
NS I TGDDCIS+GDG + + + VTCGPGHGISVGSLG+Y E+ V+G+ V NCTL T
Sbjct: 203 NSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQET 262
Query: 271 TNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKV 330
NGLRIKTWP++ + + +D+H+EDI+L DV NPI++DQEYCP+N+CN++ S IK+ +
Sbjct: 263 DNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNI 322
Query: 331 SFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVVTGIQK 390
SFKNIRG++GN AVKLLCS YPC++V + DIDI Y G +GP CSNV P + G Q
Sbjct: 323 SFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPKILGSQS 382
Query: 391 PIIC 393
P C
Sbjct: 383 PKAC 386
BLAST of CmaCh16G010560 vs. TAIR 10
Match:
AT3G07840.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 408.3 bits (1048), Expect = 7.0e-114
Identity = 191/381 (50.13%), Postives = 272/381 (71.39%), Query Frame = 0
Query: 14 LLLYVSIRTAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLG 73
+L +S+ ++ VF+V G P +DITQ L KA+ AC +P SK++I K + LG
Sbjct: 10 VLFVISLLGFSANAEVFNV---GGSPGSDITQALLKAFTSACQAPTASKVVITKGEFKLG 69
Query: 74 VITLLGPCKSPIDIVVQGTIMAP-VDITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWER 133
I + GPCK+P++I +QGT+ A I G + W+ F ++ L GGG+FDG+G AW
Sbjct: 70 EIEMTGPCKAPVEINLQGTLKADGKAIQGKERWVVFLRINGFKLNGGGIFDGEGNAAWRV 129
Query: 134 NDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTS 193
N+CHK +C ++P+S++F FV+++ +RDI+S D+KNFH+N+LG KN+TFD+V + AP S
Sbjct: 130 NNCHKTFECKKLPISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAES 189
Query: 194 INSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLV 253
N+DGIH+GR +GV I+NS I TGDDCIS+GDG + + + NV CGPGHGISVGSLG+Y+
Sbjct: 190 PNTDGIHLGRSEGVKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVH 249
Query: 254 EEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCP 313
E+ V G+ V NCTL GT NGLRIKTWP++ + + +H+E+I+L +V NPI++DQEYCP
Sbjct: 250 EQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCP 309
Query: 314 YNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGP 373
+N+CN++ PS IK+ +SFKNIRG++GN AVKLLCS +PC +V + +I++ Y G +GP
Sbjct: 310 WNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGP 369
Query: 374 VVSECSNVKPVVTGIQKPIIC 393
CSNV P + G Q P C
Sbjct: 370 PTFMCSNVSPKLVGTQNPKAC 387
BLAST of CmaCh16G010560 vs. TAIR 10
Match:
AT3G07830.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 406.0 bits (1042), Expect = 3.5e-113
Identity = 189/369 (51.22%), Postives = 266/369 (72.09%), Query Frame = 0
Query: 26 SDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGPCKSPI 85
S +V + P +DITQ L +A+ AC SP K++IPK + LG I + GPCKSP+
Sbjct: 19 SANAHEVLRLTSSPGSDITQALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPV 78
Query: 86 DIVVQGTIMAPVD-ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARI 145
+I + GT++A + I G + W+ F+ +D L GGG FDG+G AW N+CHK +C ++
Sbjct: 79 EITLLGTVLADGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKL 138
Query: 146 PMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCD 205
P+S++F FV ++ +RDI+S D+KNFH+N++G KN+TFD+V I AP S N+DGIH+GR
Sbjct: 139 PISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSV 198
Query: 206 GVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNC 265
GV+IINS I TGDDC+S+GDG + + NV CGPGHGISVGSLG+Y E+ V+G+ V NC
Sbjct: 199 GVSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINC 258
Query: 266 TLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKI 325
TL T NGLRIKTWP++ + + +++H+E+I+L +V NPI++DQEYCP+N+CN++ S I
Sbjct: 259 TLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSI 318
Query: 326 KISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPVV 385
K++ +SF+ IRG++GN AVKLLCS YPCE+V + DI+I YTG +GP CSNV+P +
Sbjct: 319 KLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPKL 378
Query: 386 TGIQKPIIC 393
G Q P C
Sbjct: 379 VGTQFPKAC 387
BLAST of CmaCh16G010560 vs. TAIR 10
Match:
AT3G14040.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 358.6 bits (919), Expect = 6.4e-99
Identity = 169/377 (44.83%), Postives = 246/377 (65.25%), Query Frame = 0
Query: 23 AQSSDGVFDVTTYGAKPN--ADITQILDKAWKDACASPIQSKLIIPKETYMLGVITLLGP 82
A+ DV GAK + D + AWK+ACA+ S + +PK Y++ + GP
Sbjct: 64 AKPGGASLDVKASGAKGDGKTDDSAAFAAAWKEACAA--GSTITVPKGEYLVESLEFKGP 123
Query: 83 CKSPIDIVVQGTIMAPVDITGD----GWIQFRYVDKISLTGG-GVFDGQGQKAWERNDCH 142
CK P+ + + G AP + GWI F + +L G +FDGQG AW+ NDC
Sbjct: 124 CKGPVTLELNGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCA 183
Query: 143 KNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSD 202
K KC +P++++F+ + +S + ITS +SK FH+NIL CKN+T + I+AP S+N+D
Sbjct: 184 KTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTD 243
Query: 203 GIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPV 262
GIH+GR +GVN+I + I TGDDC+S+GDG+ + + NV CGPGHGIS+GSLG+Y E+PV
Sbjct: 244 GIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPV 303
Query: 263 AGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKC 322
G+ V+ C + T NG+RIKTWP SP G +++ +EDI + +V P+++DQEYCPY C
Sbjct: 304 KGVTVRKCLIKNTDNGVRIKTWPGSP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHC 363
Query: 323 NRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSE 382
+PSK+K+S V+ KNI+G++ VAVKL+CS PC ++ LSDI++ + G+EGP VS
Sbjct: 364 KAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSA 423
Query: 383 CSNVKPVVTGIQKPIIC 393
CSN+KP+++G P C
Sbjct: 424 CSNIKPILSGKLVPAAC 437
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P24548 | 2.3e-122 | 57.18 | Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1 | [more] |
Q6H9K0 | 5.6e-116 | 52.27 | Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... | [more] |
Q40312 | 1.8e-114 | 51.41 | Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1 | [more] |
P35337 | 9.9e-113 | 50.82 | Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1 | [more] |
Q05967 | 1.6e-110 | 49.22 | Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1 | [more] |