Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGAACATGAAGTCGATAACTCTATCGTTCGTATTATTATTATACGTTTCTATAAAAACAGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGGTAAAAACTAATATCAAATATATCGATGTTTATATATTTTTACGATGATAAATCTTTTCTAATTATGTTCGATATTTTAAACAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACACGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGACAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGGTAAATACACTTAAATTAACTATTTGCAAATTTTAATTTATTGTTTATACTCATGCATGATCGTTTTTTTACAGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTTGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTGAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTTTGGATCAAGAATATTGTCCATACAACAAATGTAACAGGAAGGTACTGGAATTACGAAATCTTTTATTTTCTTTATTTTATTTTAATTAGAAACAATTTCATTAAAATTGTGTTTATTTGATGTTTTTTAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGGAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGGTTGTTACTGGGATACAAAAACCTATTATTTGTCCTTCGTGAGTGTAAGCTATTTCTACAAAAGATTATCGTTTGAATATGTAGTTTTCTTTTACGTTCTAGAAAATAAATTTGGAGTGAACAAAGGGTTCTCCTTCGTTGTATTTATAAATGAAGAGGAATAAAGCTTTGGTTTTGTGTTGATTTTTCATGTGAAGCTGTTGAGTTAGCTGATATTGAGATCACTTATAATTGGATTTGTAGCCGGGTGATTTTCTCATCTACTACACATCTCATACTACCCCTGTGAACTTAAAATTCATAATCCCAATTTAATTTACCTGTGCCTGTTTGAACAACCTCAGTTAATCGTGTCTTTATTTGATAAGAATCTGTACATCTTTATAAGAAAACTTTATCCATGGATCCCTTCCATGGAAGAAGTGCATCTTTATAATTCGTGATAATTTTTTCAATTTCGAACTTATTTTTTAATACAAATCATGAGAATTTATATTTTTTCTCTAATCTTTCGTTGAGAGGTAAAGGACTAAATCATTTTAAGAAAAAAAGTTTTTGAAAGGAATATTAATAATTTCAAAGGATCCTTGAACTTTTACTACATTTTCAAGTGAAGACATATATGGAACCTCAAAATGAAACCTTTCATGACTTATATGAAACCAATGAAACCTTTCATGACATATATGAAACCTCAAACGATGAGTCTGTAATTTCAAAATGAAACCTTTCTTGAAGATTAATGTTTTAGTTCATATTAAAAGGCTCAATTTTATCTCAATGTTCAAATGTGAAACTCAAATTAAAAGCCATTTCATTTATTTTACCACTCAATTTCTAAGATAAATAAGTTGAAATGAACCAAGGGATTTCCTTTATTTTATTTATAAATGAAGAGGCATGCAACTTAA
mRNA sequence
ATGGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACACGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGACAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTTGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTGAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTTTGGATCAAGAATATTGTCCATACAACAAATGTAACAGGAAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGGAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGAGGCATGCAACTTAA
Coding sequence (CDS)
ATGGCTCAATCAAGTGATGGAGTTTTTGACGTGACAACATACGGTGCTAAGCCTAATGCTGATATAACTCAGATTCTAGACAAGGCATGGAAGGACGCTTGTGCTTCACCGATTCAAAGTAAATTAATTATTCCAAAAGAGACTTACACGTTAGGTGTAATCACATTGCTTGGTCCTTGCAAGAGTCCAATTGATATTGTCGTGCAAGGAACAATAATGGCACCCGTAGATATAACAGGTGATGGTTGGATTCAGTTCAGATATGTCGACAAAATTTCATTAACAGGTGGCGGAGTTTTTGATGGACAAGGACAAAAAGCTTGGGAAAGAAACGATTGTCATAAAAACCCTAAGTGTGCAAGAATTCCAATGAGTTTGAAGTTCAGCTTTGTAAAAGATTCAATTGTGAGGGACATAACGTCAAAAGACAGCAAGAATTTTCATGTCAATATCCTAGGTTGTAAGAATCTTACTTTCGACCACGTGACTATAAATGCACCCGGAACTAGTATTAATAGTGATGGAATTCACATGGGTCGTTGTGATGGAGTTAACATCATCAATTCAGTTATTGGTACTGGTGATGATTGTATCTCACTTGGAGATGGAAGCAGAGAGGTGACAATTACGAACGTGACGTGTGGACCTGGACACGGCATAAGCGTAGGAAGTCTAGGACAATATCTTGTTGAAGAACCGGTTGCTGGGCTTTATGTCAAAAATTGTACATTAATTGGTACCACAAATGGCCTGAGAATCAAAACATGGCCGGCTTCTCCTGCTACTGGATCGGTTACTGATATGCACTATGAAGATATAGTCTTGGTTGACGTCCAAAATCCAATTATTTTGGATCAAGAATATTGTCCATACAACAAATGTAACAGGAAGATTCCGTCGAAAATCAAGATAAGTAAGGTGAGTTTCAAGAATATTAGAGGTAGTGCTGGGAATGCAGTTGCTGTGAAGCTTTTGTGTAGTGCTGATTATCCATGTGAAGATGTGACGTTATCTGACATTGATATCACTTATACCGGACGTGAAGGTCCAGTTGTATCTGAATGTTCGAATGTGAAACCGAGGCATGCAACTTAA
Protein sequence
MAQSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQGTIMAPVDITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPRHAT
Homology
BLAST of CmaCh16G010550 vs. ExPASy Swiss-Prot
Match:
P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)
HSP 1 Score: 431.8 bits (1109), Expect = 7.7e-120
Identity = 198/344 (57.56%), Postives = 259/344 (75.29%), Query Frame = 0
Query: 21 DITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQGTIMAPVD--- 80
D TQ L AWK+ACAS S +++PK + +G+ITL GPCKS I + +QGT+ AP D
Sbjct: 1 DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSK 60
Query: 81 ITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKN-PKCARIPMSLKFSFVKDSIV 140
I G GWI +D +++ GGGVFDGQG+ AW +NDCHKN P C + M+L+ V +SI+
Sbjct: 61 IKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSIL 120
Query: 141 RDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDD 200
RD+T+ DSKNFHVN++GCKNLTF+ I+A TSIN+DGIH+GR DGVNIIN+ I TGDD
Sbjct: 121 RDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDD 180
Query: 201 CISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTW 260
CISLGDGS+ + ITN+TCGPGHGISVGSLG+Y EE V G+YVKNCT+ G+ NG+RIKTW
Sbjct: 181 CISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTW 240
Query: 261 PASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSA 320
P S G ++MH++DI + V PI++DQ YCPYN+C ++PS +K+SK+SFKNI+G++
Sbjct: 241 PKS-EPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTS 300
Query: 321 GNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKP 361
AVKL+CS +PC V L+DID+TY+G+ GP S C N+KP
Sbjct: 301 TTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKP 343
BLAST of CmaCh16G010550 vs. ExPASy Swiss-Prot
Match:
Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)
HSP 1 Score: 413.3 bits (1061), Expect = 2.8e-114
Identity = 191/362 (52.76%), Postives = 257/362 (70.99%), Query Frame = 0
Query: 3 QSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCK- 62
QSS VF+V YGAK DI+Q + KAWK ACAS S ++IPK Y +G + + GPCK
Sbjct: 4 QSSGSVFNVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKG 63
Query: 63 SPIDIVVQGTIMAPVD---ITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPK 122
S I + G + AP D DGW+ F +D ++++G G DGQGQ AW +N+C KNP
Sbjct: 64 SKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPN 123
Query: 123 CARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHM 182
C M+L+F F+K ++VRDITS +SK FH+N+L C+++TF HVT+ APGTSIN+DGIH+
Sbjct: 124 CKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHV 183
Query: 183 GRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLY 242
G GV I N+ I TGDDCIS+G GS+ VTIT V CGPGHGIS+GSLG+Y E+ V G+
Sbjct: 184 GISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGIT 243
Query: 243 VKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKI 302
VK CT GT NG+R+KTWP SP G+ TD+ ++D+ + +VQNP+ILDQEYCPY +C+R+
Sbjct: 244 VKGCTFSGTMNGVRVKTWPNSP-PGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQA 303
Query: 303 PSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNV 361
PS+IK+S ++F NIRG++ VAV + CS PC ++ + +I+++Y G GP S CSNV
Sbjct: 304 PSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNV 363
BLAST of CmaCh16G010550 vs. ExPASy Swiss-Prot
Match:
Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)
HSP 1 Score: 408.3 bits (1048), Expect = 9.1e-113
Identity = 191/365 (52.33%), Postives = 266/365 (72.88%), Query Frame = 0
Query: 4 SSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSP 63
+ GV D++ +G KPN+DI Q L AW +ACAS +K++IP TY L I L GPCK+P
Sbjct: 20 AQSGVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKIVIPAGTYQLNGIELKGPCKAP 79
Query: 64 IDIVVQGTIMAPVD---ITG-DGWIQFRYVDKISLTGGGVFDGQG----QKAWERNDCHK 123
I++ V GTI AP D I G + W +F Y+D ++L+G GVFDGQG +KA +
Sbjct: 80 IELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSG 139
Query: 124 NPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDG 183
+++ M+ F+FV +SIVR +TSKDSKNFHV + GCKN+TFD TI APG S N+DG
Sbjct: 140 KNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDG 199
Query: 184 IHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVA 243
IHMG+ V I+N+ IGTGDDC+S+GDGS+++T+ V CGPGHG+SVGSLG++ EE V
Sbjct: 200 IHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVE 259
Query: 244 GLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCN 303
G+ VKNCTL T NG+RIKTWP +P T +V+D+H+EDI + +V+NP+I+DQEY P+N+C+
Sbjct: 260 GITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCS 319
Query: 304 RKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSEC 361
+K PSKIK+SK+SFKN++G++G A V L+CS+ PC+ V L+++D+ + G P ++C
Sbjct: 320 KKNPSKIKLSKISFKNVKGTSGTAEGVVLICSSAVPCDGVELNNVDLKFNG--APTTAKC 379
BLAST of CmaCh16G010550 vs. ExPASy Swiss-Prot
Match:
P35337 (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)
HSP 1 Score: 402.1 bits (1032), Expect = 6.5e-111
Identity = 181/354 (51.13%), Postives = 253/354 (71.47%), Query Frame = 0
Query: 10 DVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQ 69
+V T G PN+DIT + KA+ AC +P S+++IPK + LG + GPCKSPI+ +Q
Sbjct: 23 EVFTAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKGDFKLGETVMTGPCKSPIEFTLQ 82
Query: 70 GTIMAPVDIT--GDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLK 129
G + T D W+ F ++ L GGG FDG+G AW+ N+CHK +C ++P+S++
Sbjct: 83 GNVKTDGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLPISVR 142
Query: 130 FSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNII 189
F FV ++ ++D+TS D+KNFH N++ KN+TFD++ I AP S N+DGIH+GRC+GV I+
Sbjct: 143 FDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKIL 202
Query: 190 NSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGT 249
N+ I TGDDCIS+GDG + + I V CGPGHGISVGSLG+Y E+ V + VKNCTL GT
Sbjct: 203 NTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCTLEGT 262
Query: 250 TNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKV 309
+NGLRIKTWP++ T + +H+EDI+L V NPI++DQEYCP+N+CN+ PS IK+ +
Sbjct: 263 SNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNKPSTIKLVDI 322
Query: 310 SFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPR 362
+F+NIRG++ N AVKLLCS +PCE+V + DI+I YTG +GP EC+NV P+
Sbjct: 323 TFRNIRGTSENKDAVKLLCSKGHPCENVEIGDINIEYTGPDGPPTFECTNVTPK 376
BLAST of CmaCh16G010550 vs. ExPASy Swiss-Prot
Match:
Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)
HSP 1 Score: 394.0 bits (1011), Expect = 1.8e-108
Identity = 183/361 (50.69%), Postives = 256/361 (70.91%), Query Frame = 0
Query: 3 QSSDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKS 62
+S GVFD+T YGA NADI++ L A+K+AC S S ++IPK T+T+ + L GPCKS
Sbjct: 21 ESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQVKLEGPCKS 80
Query: 63 PIDIVVQGTIMAPVD---ITGDGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKC 122
P+++ +Q T+ AP D + W+ +D+ +++GGG+ DGQ AWE C ++ KC
Sbjct: 81 PLELQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAWE---CKQSKKC 140
Query: 123 ARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMG 182
++P +L F+ + +S ++DIT+ DSK+FHVN+ CKNLTF ++AP S N+DGIH+
Sbjct: 141 NKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVS 200
Query: 183 RCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYV 242
R VNI +S TGDDCIS+GD + ++ IT VTCGPGHGISVGSLG E+PV G++V
Sbjct: 201 RSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVVGVFV 260
Query: 243 KNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIP 302
+NCT T NG+RIKTWPAS G V D+H+EDI++ +V NP+++DQ YCP+NKCN+ +P
Sbjct: 261 RNCTFTNTDNGVRIKTWPAS-HPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDLP 320
Query: 303 SKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVK 361
S++KISKVSF+NI+G++ AV LL S PCE + + DIDITY+G+EGP S C N+K
Sbjct: 321 SQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGKEGPAKSSCENIK 377
BLAST of CmaCh16G010550 vs. TAIR 10
Match:
AT5G48140.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 411.4 bits (1056), Expect = 7.7e-115
Identity = 183/345 (53.04%), Postives = 256/345 (74.20%), Query Frame = 0
Query: 18 PNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQGTIMAPVD 77
P +DIT L KA+ +AC P +S ++IPK Y LG I ++GPCK+PI I + GT+ A +
Sbjct: 32 PGSDITNALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGN 91
Query: 78 ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLKFSFVKDSIV 137
G + W+ FR ++ L GGGVFDG+G AW N+CHK C ++P+S++F FV D+ +
Sbjct: 92 ANGKEKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFDFVTDAKI 151
Query: 138 RDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNIINSVIGTGDD 197
R ITS D+K+FH+N++G KN+TF+ V I AP S N+DGIH+GR DG+ IINS I TGDD
Sbjct: 152 RGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDD 211
Query: 198 CISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGTTNGLRIKTW 257
C+S+GDG + + + VTCGPGHGIS+GSLG+Y EE V+G+ + NCTL T NGLRIKTW
Sbjct: 212 CVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTW 271
Query: 258 PASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKVSFKNIRGSA 317
P++ T + +D+H+E+I+L +V NPI++DQEYCP+N+CN++ PS IK++ +SFK IRG++
Sbjct: 272 PSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTS 331
Query: 318 GNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPR 362
GN AVKLLCS YPC++V + D++I YTG +GP +CSNV P+
Sbjct: 332 GNKDAVKLLCSKGYPCQNVEVGDVNIQYTGADGPATFQCSNVSPK 376
BLAST of CmaCh16G010550 vs. TAIR 10
Match:
AT3G07820.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 410.6 bits (1054), Expect = 1.3e-114
Identity = 189/354 (53.39%), Postives = 259/354 (73.16%), Query Frame = 0
Query: 10 DVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQ 69
+V T G+ +DITQ L KA+ AC S SK++IPK + LG I + GPCK+PI++ +Q
Sbjct: 23 EVFTIGSSSGSDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQ 82
Query: 70 GTIMAPVD-ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLK 129
GT+ A + I G + W+ F +D L GGG FDG+G AW N+CHK +C ++P+S++
Sbjct: 83 GTVKADGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIR 142
Query: 130 FSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNII 189
F F+ +S +RDI+S D+KNFH+N+LG KN+T +++ I AP S N+DGIH+GR DGV I+
Sbjct: 143 FDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKIL 202
Query: 190 NSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGT 249
NS I TGDDCIS+GDG + + + VTCGPGHGISVGSLG+Y E+ V+G+ V NCTL T
Sbjct: 203 NSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQET 262
Query: 250 TNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKV 309
NGLRIKTWP++ + + +D+H+EDI+L DV NPI++DQEYCP+N+CN++ S IK+ +
Sbjct: 263 DNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNI 322
Query: 310 SFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPR 362
SFKNIRG++GN AVKLLCS YPC++V + DIDI Y G +GP CSNV P+
Sbjct: 323 SFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPATFHCSNVSPK 376
BLAST of CmaCh16G010550 vs. TAIR 10
Match:
AT3G07840.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 401.7 bits (1031), Expect = 6.1e-112
Identity = 183/354 (51.69%), Postives = 259/354 (73.16%), Query Frame = 0
Query: 10 DVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPIDIVVQ 69
+V G P +DITQ L KA+ AC +P SK++I K + LG I + GPCK+P++I +Q
Sbjct: 24 EVFNVGGSPGSDITQALLKAFTSACQAPTASKVVITKGEFKLGEIEMTGPCKAPVEINLQ 83
Query: 70 GTIMAP-VDITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARIPMSLK 129
GT+ A I G + W+ F ++ L GGG+FDG+G AW N+CHK +C ++P+S++
Sbjct: 84 GTLKADGKAIQGKERWVVFLRINGFKLNGGGIFDGEGNAAWRVNNCHKTFECKKLPISIR 143
Query: 130 FSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCDGVNII 189
F FV+++ +RDI+S D+KNFH+N+LG KN+TFD+V + AP S N+DGIH+GR +GV I+
Sbjct: 144 FDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKIL 203
Query: 190 NSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNCTLIGT 249
NS I TGDDCIS+GDG + + + NV CGPGHGISVGSLG+Y+ E+ V G+ V NCTL GT
Sbjct: 204 NSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCTLQGT 263
Query: 250 TNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKIKISKV 309
NGLRIKTWP++ + + +H+E+I+L +V NPI++DQEYCP+N+CN++ PS IK+ +
Sbjct: 264 DNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDI 323
Query: 310 SFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPR 362
SFKNIRG++GN AVKLLCS +PC +V + +I++ Y G +GP CSNV P+
Sbjct: 324 SFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNINLEYKGADGPPTFMCSNVSPK 377
BLAST of CmaCh16G010550 vs. TAIR 10
Match:
AT3G07830.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 401.4 bits (1030), Expect = 7.9e-112
Identity = 185/359 (51.53%), Postives = 262/359 (72.98%), Query Frame = 0
Query: 5 SDGVFDVTTYGAKPNADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGPCKSPI 64
S +V + P +DITQ L +A+ AC SP K++IPK + LG I + GPCKSP+
Sbjct: 19 SANAHEVLRLTSSPGSDITQALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPV 78
Query: 65 DIVVQGTIMAPVD-ITG-DGWIQFRYVDKISLTGGGVFDGQGQKAWERNDCHKNPKCARI 124
+I + GT++A + I G + W+ F+ +D L GGG FDG+G AW N+CHK +C ++
Sbjct: 79 EITLLGTVLADGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKL 138
Query: 125 PMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSDGIHMGRCD 184
P+S++F FV ++ +RDI+S D+KNFH+N++G KN+TFD+V I AP S N+DGIH+GR
Sbjct: 139 PISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSV 198
Query: 185 GVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPVAGLYVKNC 244
GV+IINS I TGDDC+S+GDG + + NV CGPGHGISVGSLG+Y E+ V+G+ V NC
Sbjct: 199 GVSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINC 258
Query: 245 TLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKCNRKIPSKI 304
TL T NGLRIKTWP++ + + +++H+E+I+L +V NPI++DQEYCP+N+CN++ S I
Sbjct: 259 TLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSI 318
Query: 305 KISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSECSNVKPR 362
K++ +SF+ IRG++GN AVKLLCS YPCE+V + DI+I YTG +GP CSNV+P+
Sbjct: 319 KLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDINIQYTGADGPATFMCSNVRPK 377
BLAST of CmaCh16G010550 vs. TAIR 10
Match:
AT3G14040.1 (Pectin lyase-like superfamily protein )
HSP 1 Score: 351.7 bits (901), Expect = 7.2e-97
Identity = 166/366 (45.36%), Postives = 239/366 (65.30%), Query Frame = 0
Query: 2 AQSSDGVFDVTTYGAKPN--ADITQILDKAWKDACASPIQSKLIIPKETYTLGVITLLGP 61
A+ DV GAK + D + AWK+ACA+ S + +PK Y + + GP
Sbjct: 64 AKPGGASLDVKASGAKGDGKTDDSAAFAAAWKEACAA--GSTITVPKGEYLVESLEFKGP 123
Query: 62 CKSPIDIVVQGTIMAPVDITGD----GWIQFRYVDKISLTGG-GVFDGQGQKAWERNDCH 121
CK P+ + + G AP + GWI F + +L G +FDGQG AW+ NDC
Sbjct: 124 CKGPVTLELNGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCA 183
Query: 122 KNPKCARIPMSLKFSFVKDSIVRDITSKDSKNFHVNILGCKNLTFDHVTINAPGTSINSD 181
K KC +P++++F+ + +S + ITS +SK FH+NIL CKN+T + I+AP S+N+D
Sbjct: 184 KTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTD 243
Query: 182 GIHMGRCDGVNIINSVIGTGDDCISLGDGSREVTITNVTCGPGHGISVGSLGQYLVEEPV 241
GIH+GR +GVN+I + I TGDDC+S+GDG+ + + NV CGPGHGIS+GSLG+Y E+PV
Sbjct: 244 GIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPV 303
Query: 242 AGLYVKNCTLIGTTNGLRIKTWPASPATGSVTDMHYEDIVLVDVQNPIILDQEYCPYNKC 301
G+ V+ C + T NG+RIKTWP SP G +++ +EDI + +V P+++DQEYCPY C
Sbjct: 304 KGVTVRKCLIKNTDNGVRIKTWPGSP-PGIASNILFEDITMDNVSLPVLIDQEYCPYGHC 363
Query: 302 NRKIPSKIKISKVSFKNIRGSAGNAVAVKLLCSADYPCEDVTLSDIDITYTGREGPVVSE 361
+PSK+K+S V+ KNI+G++ VAVKL+CS PC ++ LSDI++ + G+EGP VS
Sbjct: 364 KAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGKEGPAVSA 423
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P24548 | 7.7e-120 | 57.56 | Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1 | [more] |
Q6H9K0 | 2.8e-114 | 52.76 | Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S... | [more] |
Q40312 | 9.1e-113 | 52.33 | Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1 | [more] |
P35337 | 6.5e-111 | 51.13 | Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1 | [more] |
Q05967 | 1.8e-108 | 50.69 | Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1 | [more] |