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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTCGAGGAAGGGACGCTTGCTGGGAACATTGTGTCCTTGTTGATGCGACGAGACAGAAGGTTCGATGCAATTATTGTCAGCGGGAATTCAGTGGAGGTGTATACAGGATGAAATTTCATTTAGCTCAAATTAAAAACAAAGATATAGTTCCATGTGCCGAAGTCCCGATCGACGTTCGAGACCGTATTCAAGGTATATTAAGCACTCCTAAAAAACAAAGGGCACCCAAGAAACCAAAGGTCGATATGGAAACTGCAACAAATGGACAGCAACATAGCTCCTCAGCTAGCGGAGGCATCCATCATGGATCGAGTGGACAGAACGAAAGCAACTGCCCATCGACGCTTCCGTGCTCTTCACCGAGCGCACAACCACTGATCGATGATGCTCAAAAGCAGAAGAAGGATGAAACTGATAAAAAAGTTGCTGTCTTTTTCTTCCATAACTCTATTCCTTTCAGTGCTGCCAAGTCCTTGTATTATCAGGAAATGGTGAATGCTATAGCAGAATATGGAGTAGGATACCGAGCACCGAGTTACGACAAACTAAAATCGACTCTTTTGGATAAGGTGAAAGGTGATATACAGAATTCTTACAAAAAGTATCGAGACGAATGGAAAGAAACAGGCTGTACGATCCTATGTAATAGCTGGTCCGATGGACGGACCAAATCGTTTCTAATCATTTCCATTACGTGTTCAAAAGGAACACTGTTTCTGAAGTCGGTCAATATATCAGGTCGTGAAGATGATGCAACTTACCTGTCCGACTTGCTCGAGACGATAGTCCTCGAGGTTGGTGTGGAGAATGTTGTCCAAGTTATTACAGATGCTACAGCCAGCTATGTCTATGCTGGTAGGCTTCTCATGACCAAATACACTTCCTTATTTTGGTCTCCATGTGTTTCTTACTGTGTTAATCAGATGTTGGAGGACCTTAGTAAAATTGAGTGGGTCGGTACAGTATTGGACGAGGCAAAGATCATTGCCCGCTACGTTTATAGTCATGCGTGGATTTTAGACACGATGCGAAAATTCACGAGCGGGAAGGAACTGATCAGGCCAAGAATTACTAGATTTGTGACTAATTTTCTGTCCTTGAGGTCCATTGTGTTTCTTGAGGACGGTCTCAAACACATGTTTGCTCATTCGGAGTGGCAGTCCTCGATTTATAGCAGGCGCCCCGACGCACAGGCGATTCTTTCCTTTCTGTATTTGGATCGATTTTGGAAGGACGCTCGTGAAGCTGTCAACATTTCTGAGCCACTTATTAGAATTCTCAGGCTTGTTGATGGAGACATGCCTGCCATGGGCTATATATATGAAGGAATAGAGAGGGCGAAGGTCGAAGTCAAAGCGTATTACAATGGCATTGAGGATAAATATATGCCTATTTGGGACACGATCGACCGGAGATGGAACTTGCAGCTTCACACGACGTTACACACAGCAGCAGCATTCCTTAACCCATCGATCTTTTATAATCCGAACTTTAAGATTGATCTGAGAATTAGAAACGGATTTCAGGAAGCTATGTTGAAGATGGCGACGACGGATAAAGATAAAATGGAGATCACTAGAGAACATCCTGCATATGTAAATGCTCAAGGTGCTCTTGGTACCGACTTCGCTATCTTGGGGAGAACTATAAATACCCCAGGTATGAACCGTCTTATGCATGTGACTTATAAGTTTTATTGTTACATTCCAAGCACACCGTTATTAGATATTGTCTTTTTTGAGCTTTCCCTTCTGGGCTTCTCCTCAAGGTTTTAAAACGCGTTTAATAAGGAGAGATTTCCACGCCCTTGTAAAGAATGCTTCATTCCTCTCTCCAACCGATATGAGATCTCACAATCCATCCCCCTTCAGGGCCTAACGTTCTCATTGACACTCATTCCCCTCTCCAATCAATGTAGGATCTCACAATCCACACCCTTTCGAGGACCAGCGTCCTCGCTGGTACGCTGCTTAGTGTAATTGTGTGATCCCACATTGATTGGAGAGGGGAGCGAGTGCCAGCGAGGACATTAGGCCCCAGAGGGGGTGGATTGTGAGATCCTATATTGGTTGGATAGGGGAACGAAGCATTCTTTATAAGCGTATAGAAACTTCTCCCTAGTATACGCATTTTAAAACCTTGATGGGAAGCCTAGAAAGGGAAAGCCCAGTGAAGATAATATTTACCAACGGTGGGCTTGAGCTGTTACATATAACCCTCCAACTACATCAAGCCGGCTCAAAGGTTCCTAGCCTGTCATCTCCCAAACGATACCCTATACTGCAGTATTTTTGTTTACTTTTCAGATGCTTATTTCAATTTCCATGTTGCATCTAGGGGATTGGTGGTCAGGGTACGGTTACGAAATCCCGACGCTCCAGAGAGTAGCGATACGAATACTAAGCCAACCCTGTAGTTCTTATGGGTGCAGCAGATGGAACTGGAGCACGTTCGAAACCTTACATTCGAAGAAGCGTAGTAGAACCGAACAGGAAAAGTTGAACGATTTAGTGTTTGTACAGTGCAATCTCTGGTTGCAACACATTCGTTGGACTCGGGATGGTAAATATAAACCCGTCGTATTTGATGATATTGATGTGAGTTTAGAATGGCCGACCGAGCTAGAATCATCAGCTCGTGTTTTAGATGATTCGTGGTTGGATAATCTGCCTCTTGAATGTGGAGGCAGCCCTTAATATCTTTAAGGCAATCAGAAGAAACAGATACATCAATATTCCCTTGATTGCATATCATCTCCAAATAGTGCACTCAGGTGTTCATACAAATCAAAGAGAAGCTTCTCTGTAAATTAGA mRNA sequence ATGGTTCGAGGAAGGGACGCTTGCTGGGAACATTGTGTCCTTGTTGATGCGACGAGACAGAAGGTTCGATGCAATTATTGTCAGCGGGAATTCAGTGGAGGTGTATACAGGATGAAATTTCATTTAGCTCAAATTAAAAACAAAGATATAGTTCCATGTGCCGAAGTCCCGATCGACGTTCGAGACCGTATTCAAGGTATATTAAGCACTCCTAAAAAACAAAGGGCACCCAAGAAACCAAAGGTCGATATGGAAACTGCAACAAATGGACAGCAACATAGCTCCTCAGCTAGCGGAGGCATCCATCATGGATCGAGTGGACAGAACGAAAGCAACTGCCCATCGACGCTTCCGTGCTCTTCACCGAGCGCACAACCACTGATCGATGATGCTCAAAAGCAGAAGAAGGATGAAACTGATAAAAAAGTTGCTGTCTTTTTCTTCCATAACTCTATTCCTTTCAGTGCTGCCAAGTCCTTGTATTATCAGGAAATGGTGAATGCTATAGCAGAATATGGAGTAGGATACCGAGCACCGAGTTACGACAAACTAAAATCGACTCTTTTGGATAAGGTGAAAGGTGATATACAGAATTCTTACAAAAAGTATCGAGACGAATGGAAAGAAACAGGCTGTACGATCCTATGTAATAGCTGGTCCGATGGACGGACCAAATCGTTTCTAATCATTTCCATTACGTGTTCAAAAGGAACACTGTTTCTGAAGTCGGTCAATATATCAGGTCGTGAAGATGATGCAACTTACCTGTCCGACTTGCTCGAGACGATAGTCCTCGAGGTTGGTGTGGAGAATGTTGTCCAAGTTATTACAGATGCTACAGCCAGCTATGTCTATGCTGGTAGGCTTCTCATGACCAAATACACTTCCTTATTTTGGTCTCCATGTGTTTCTTACTGTGTTAATCAGATGTTGGAGGACCTTAGTAAAATTGAGTGGGTCGGTACAGTATTGGACGAGGCAAAGATCATTGCCCGCTACGTTTATAGTCATGCGTGGATTTTAGACACGATGCGAAAATTCACGAGCGGGAAGGAACTGATCAGGCCAAGAATTACTAGATTTGTGACTAATTTTCTGTCCTTGAGGTCCATTGTGTTTCTTGAGGACGGTCTCAAACACATGTTTGCTCATTCGGAGTGGCAGTCCTCGATTTATAGCAGGCGCCCCGACGCACAGGCGATTCTTTCCTTTCTGTATTTGGATCGATTTTGGAAGGACGCTCGTGAAGCTGTCAACATTTCTGAGCCACTTATTAGAATTCTCAGGCTTGTTGATGGAGACATGCCTGCCATGGGCTATATATATGAAGGAATAGAGAGGGCGAAGGTCGAAGTCAAAGCGTATTACAATGGCATTGAGGATAAATATATGCCTATTTGGGACACGATCGACCGGAGATGGAACTTGCAGCTTCACACGACGTTACACACAGCAGCAGCATTCCTTAACCCATCGATCTTTTATAATCCGAACTTTAAGATTGATCTGAGAATTAGAAACGGATTTCAGGAAGCTATGTTGAAGATGGCGACGACGGATAAAGATAAAATGGAGATCACTAGAGAACATCCTGCATATGTAAATGCTCAAGGTGCTCTTGGGGATTGGTGGTCAGGGTACGGTTACGAAATCCCGACGCTCCAGAGAGTAGCGATACGAATACTAAGCCAACCCTGTAGTTCTTATGGGTGCAGCAGATGGAACTGGAGCACGTTCGAAACCTTACATTCGAAGAAGCGTAGTAGAACCGAACAGGAAAAGTTGAACGATTTAGTGTTTGTACAGTGCAATCTCTGGTTGCAACACATTCGTTGGACTCGGGATGGTAAATATAAACCCGTCGTATTTGATGATATTGATGTGAGTTTAGAATGGCCGACCGAGCTAGAATCATCAGCTCGTGTTTTAGATGATTCGTGGTTGGATAATCTGCCTCTTGAATGTGGAGGCAGCCCTTAATATCTTTAAGGCAATCAGAAGAAACAGATACATCAATATTCCCTTGATTGCATATCATCTCCAAATAGTGCACTCAGGTGTTCATACAAATCAAAGAGAAGCTTCTCTGTAAATTAGA Coding sequence (CDS) ATGGTTCGAGGAAGGGACGCTTGCTGGGAACATTGTGTCCTTGTTGATGCGACGAGACAGAAGGTTCGATGCAATTATTGTCAGCGGGAATTCAGTGGAGGTGTATACAGGATGAAATTTCATTTAGCTCAAATTAAAAACAAAGATATAGTTCCATGTGCCGAAGTCCCGATCGACGTTCGAGACCGTATTCAAGGTATATTAAGCACTCCTAAAAAACAAAGGGCACCCAAGAAACCAAAGGTCGATATGGAAACTGCAACAAATGGACAGCAACATAGCTCCTCAGCTAGCGGAGGCATCCATCATGGATCGAGTGGACAGAACGAAAGCAACTGCCCATCGACGCTTCCGTGCTCTTCACCGAGCGCACAACCACTGATCGATGATGCTCAAAAGCAGAAGAAGGATGAAACTGATAAAAAAGTTGCTGTCTTTTTCTTCCATAACTCTATTCCTTTCAGTGCTGCCAAGTCCTTGTATTATCAGGAAATGGTGAATGCTATAGCAGAATATGGAGTAGGATACCGAGCACCGAGTTACGACAAACTAAAATCGACTCTTTTGGATAAGGTGAAAGGTGATATACAGAATTCTTACAAAAAGTATCGAGACGAATGGAAAGAAACAGGCTGTACGATCCTATGTAATAGCTGGTCCGATGGACGGACCAAATCGTTTCTAATCATTTCCATTACGTGTTCAAAAGGAACACTGTTTCTGAAGTCGGTCAATATATCAGGTCGTGAAGATGATGCAACTTACCTGTCCGACTTGCTCGAGACGATAGTCCTCGAGGTTGGTGTGGAGAATGTTGTCCAAGTTATTACAGATGCTACAGCCAGCTATGTCTATGCTGGTAGGCTTCTCATGACCAAATACACTTCCTTATTTTGGTCTCCATGTGTTTCTTACTGTGTTAATCAGATGTTGGAGGACCTTAGTAAAATTGAGTGGGTCGGTACAGTATTGGACGAGGCAAAGATCATTGCCCGCTACGTTTATAGTCATGCGTGGATTTTAGACACGATGCGAAAATTCACGAGCGGGAAGGAACTGATCAGGCCAAGAATTACTAGATTTGTGACTAATTTTCTGTCCTTGAGGTCCATTGTGTTTCTTGAGGACGGTCTCAAACACATGTTTGCTCATTCGGAGTGGCAGTCCTCGATTTATAGCAGGCGCCCCGACGCACAGGCGATTCTTTCCTTTCTGTATTTGGATCGATTTTGGAAGGACGCTCGTGAAGCTGTCAACATTTCTGAGCCACTTATTAGAATTCTCAGGCTTGTTGATGGAGACATGCCTGCCATGGGCTATATATATGAAGGAATAGAGAGGGCGAAGGTCGAAGTCAAAGCGTATTACAATGGCATTGAGGATAAATATATGCCTATTTGGGACACGATCGACCGGAGATGGAACTTGCAGCTTCACACGACGTTACACACAGCAGCAGCATTCCTTAACCCATCGATCTTTTATAATCCGAACTTTAAGATTGATCTGAGAATTAGAAACGGATTTCAGGAAGCTATGTTGAAGATGGCGACGACGGATAAAGATAAAATGGAGATCACTAGAGAACATCCTGCATATGTAAATGCTCAAGGTGCTCTTGGGGATTGGTGGTCAGGGTACGGTTACGAAATCCCGACGCTCCAGAGAGTAGCGATACGAATACTAAGCCAACCCTGTAGTTCTTATGGGTGCAGCAGATGGAACTGGAGCACGTTCGAAACCTTACATTCGAAGAAGCGTAGTAGAACCGAACAGGAAAAGTTGAACGATTTAGTGTTTGTACAGTGCAATCTCTGGTTGCAACACATTCGTTGGACTCGGGATGGTAAATATAAACCCGTCGTATTTGATGATATTGATGTGAGTTTAGAATGGCCGACCGAGCTAGAATCATCAGCTCGTGTTTTAGATGATTCGTGGTTGGATAATCTGCCTCTTGAATGTGGAGGCAGCCCTTAA Protein sequence MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPIDVRDRIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGGIHHGSSGQNESNCPSTLPCSSPSAQPLIDDAQKQKKDETDKKVAVFFFHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPSYDKLKSTLLDKVKGDIQNSYKKYRDEWKETGCTILCNSWSDGRTKSFLIISITCSKGTLFLKSVNISGREDDATYLSDLLETIVLEVGVENVVQVITDATASYVYAGRLLMTKYTSLFWSPCVSYCVNQMLEDLSKIEWVGTVLDEAKIIARYVYSHAWILDTMRKFTSGKELIRPRITRFVTNFLSLRSIVFLEDGLKHMFAHSEWQSSIYSRRPDAQAILSFLYLDRFWKDAREAVNISEPLIRILRLVDGDMPAMGYIYEGIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHTTLHTAAAFLNPSIFYNPNFKIDLRIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGALGDWWSGYGYEIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKKRSRTEQEKLNDLVFVQCNLWLQHIRWTRDGKYKPVVFDDIDVSLEWPTELESSARVLDDSWLDNLPLECGGSP
Homology
BLAST of CmaCh16G010470 vs. TAIR 10
Match: AT1G79740.1 (hAT transposon superfamily ) HSP 1 Score: 415.2 bits (1066), Expect = 9.6e-116 Identity = 226/663 (34.09%), Postives = 373/663 (56.26%), Query Frame = 0
Query: 1 MVRGRDACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPIDV 60
MVR +D CWE+ +D KV+C +C R +GG+ R+K HL+++ +K + PCA+V DV
Sbjct: 1 MVREKDICWEYAEKLDG--NKVKCKFCSRVLNGGISRLKHHLSRLPSKGVNPCAKVRDDV 60
Query: 61 RDRIQGILSTPKKQRAPKKPKVDMETATNGQQHSSSASGGIHHGSSGQNESNCPSTLPCS 120
DR++ ILS A P + + + + P + P
Sbjct: 61 TDRVRSILS------AKDDPPI-----------------------TNKYKPPPPLSPPFD 120
Query: 121 SPSAQPLIDDAQKQKKDETDKKVAVFFFHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPS 180
+P+++ + + +D ++ +++FFF N I F+ A+S Y M++A+A+ G G+ APS
Sbjct: 121 APASKLVFPSSPPNAQDIAERSISLFFFENKIDFAVARSPSYHHMLDAVAKCGPGFVAPS 180
Query: 181 YDKLKSTLLDKVKGDIQNSYKKYRDEWKETGCTILCNSWSDGRTKSFLIISITCSKGTLF 240
K+ LD+VK DI K EW TGCTI+ +W+D ++++ + S++ F
Sbjct: 181 ---PKTEWLDRVKSDISLQLKDTEKEWVTTGCTIIAEAWTDNKSRALINFSVSSPSRIFF 240
Query: 241 LKSVNISGREDDATYLSDLLETIVLEVGVENVVQVITDATASYVYAGRLLMTKYTSLFWS 300
KSV+ S ++ L+DL ++++ ++G E++VQ+I D + Y L+ Y ++F S
Sbjct: 241 HKSVDASSYFKNSKCLADLFDSVIQDIGQEHIVQIIMDNSFCYTGISNHLLQNYATIFVS 300
Query: 301 PCVSYCVNQMLEDLSKIEWVGTVLDEAKIIARYVYSHAWILDTMRKFTSGKELIRPRITR 360
PC S C+N +LE+ SK++WV + +A++I+++VY+++ +LD +RK T G+++IR +TR
Sbjct: 301 PCASQCLNIILEEFSKVDWVNQCISQAQVISKFVYNNSPVLDLLRKLTGGQDIIRSGVTR 360
Query: 361 FVTNFLSLRSIVFLEDGLKHMFAHSEWQSSIYSRRPDAQAILSFLYLDRFWKDAREAVNI 420
V+NFLSL+S++ + LKHMF E+ ++ + +P + + ++ L + FW+ E+V I
Sbjct: 361 SVSNFLSLQSMMKQKARLKHMFNCPEYTTN--TNKPQSISCVNILEDNDFWRAVEESVAI 420
Query: 421 SEPLIRILRLVDGDMPAMGYIYEGIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHT 480
SEP++++LR V PA+G IYE + +AK ++ YY E+K+ D +D W LH+
Sbjct: 421 SEPILKVLREVSTGKPAVGSIYELMSKAKESIRTYYIMDENKHKVFSDIVDTNWCEHLHS 480
Query: 481 TLHTAAAFLNPSIFYNPNFKIDLRIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGAL 540
LH AAAFLNPSI YNP K ++ F + + K+ T + +IT + + A+G
Sbjct: 481 PLHAAAAFLNPSIQYNPEIKFLTSLKEDFFKVLEKLLPTSDLRRDITNQIFTFTRAKGMF 540
Query: 541 GD--------------WWSGYGYEIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKK 600
G WW +G P LQRVAIRILSQ CS Y R WSTF+ +H ++
Sbjct: 541 GCNLAMEARDSVSPGLWWEQFGDSAPVLQRVAIRILSQVCSGYNLER-QWSTFQQMHWER 600
Query: 601 RSRTEQEKLNDLVFVQCNLWLQHIRWTRDGKYKPVVFDDIDVSLEWPTELESSARVLDDS 650
R++ ++E LN L +V NL L + + P+ +DID+ EW E E+ +
Sbjct: 601 RNKIDREILNKLAYVNQNLKLGRMITL---ETDPIALEDIDMMSEWVEEAENPSPA---Q 620
BLAST of CmaCh16G010470 vs. TAIR 10
Match: AT4G15020.1 (hAT transposon superfamily ) HSP 1 Score: 335.9 bits (860), Expect = 7.4e-92 Identity = 221/690 (32.03%), Postives = 340/690 (49.28%), Query Frame = 0
Query: 5 RDACWEHCVLVD-ATRQKVRCNYCQREF-SGGVYRMKFHLAQIKNKDIVPCAEVPIDVRD 64
+D W+HC + R ++RC YC++ F GG+ R+K HLA K + + C +VP DVR
Sbjct: 15 QDNAWKHCEIYKYGDRLQMRCLYCRKMFKGGGITRVKEHLAGKKGQGTI-CDQVPEDVRL 74
Query: 65 RIQGIL-STPKKQRAPKKPK------------------------------------VDME 124
+Q + T ++QR K V E
Sbjct: 75 FLQQCIDGTVRRQRKRHKSSSEPLSVASLPPIEGDMMVVQPDVNDGFKSPGSSDVVVQNE 134
Query: 125 TATNG---QQHSSSASGGIHHGSSGQNES----NCPSTLPCSSPSAQPLIDDAQKQKKDE 184
+ +G Q+ S +GS+ N + + +P + S + ++ + + +++
Sbjct: 135 SLLSGRTKQRTYRSKKNAFENGSASNNVDLIGRDMDNLIPVAISSVKNIVHPSFRDRENT 194
Query: 185 TDKKVAVFFFHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPSYDKLKSTLLDKVKGDIQN 244
+ F F F A S+ +Q M++AIA G G AP++D L+ +L ++
Sbjct: 195 IHMAIGRFLFGIGADFDAVNSVNFQPMIDAIASGGFGVSAPTHDDLRGWILKNCVEEMAK 254
Query: 245 SYKKYRDEWKETGCTILCNSWSDGRTKSFLIISITCSKGTLFLKSVNISGREDDATYLSD 304
+ + WK TGC+IL + + L + C + +FLKSV+ S A L +
Sbjct: 255 EIDECKAMWKRTGCSILVEELNSDKGFKVLNFLVYCPEKVVFLKSVDASEVLSSADKLFE 314
Query: 305 LLETIVLEVGVENVVQVITDATASYVYAGRLLMTKYTSLFWSPCVSYCVNQMLEDLSKIE 364
LL +V EVG NVVQVIT YV AG+ LM Y SL+W PC ++C++QMLE+ K+
Sbjct: 315 LLSELVEEVGSTNVVQVITKCDDYYVDAGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLG 374
Query: 365 WVGTVLDEAKIIARYVYSHAWILDTMRKFTSGKELIRPRITRFVTNFLSLRSIVFLEDGL 424
W+ +++A+ I R+VY+H+ +L+ M KFTSG +++ P + TNF +L I L+ L
Sbjct: 375 WISETIEQAQAITRFVYNHSGVLNLMWKFTSGNDILLPAFSSSATNFATLGRIAELKSNL 434
Query: 425 KHMFAHSEWQSSIYSRRPDAQAILSFLYLDRFWKDAREAVNISEPLIRILRLVDGD-MPA 484
+ M +EW YS P +++ L + FWK +++ PL+R LR+V + PA
Sbjct: 435 QAMVTSAEWNECSYSEEPSG-LVMNALTDEAFWKAVALVNHLTSPLLRALRIVCSEKRPA 494
Query: 485 MGYIYEGIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHTTLHTAAAFLNPSIFYNP 544
MGY+Y + RAK +K + ED Y+ W IDR W Q H L A FLNP +FYN
Sbjct: 495 MGYVYAALYRAKDAIKTHLVNRED-YIIYWKIIDRWWEQQQHIPLLAAGFFLNPKLFYNT 554
Query: 545 NFKIDLRIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGALG--------------DW 604
N +I + + + ++ DK + +I +E +Y A G G +W
Sbjct: 555 NEEIRSELILSVLDCIERLVPDDKIQDKIIKELTSYKTAGGVFGRNLAIRARDTMLPAEW 614
Query: 605 WSGYGYEIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKKRSRTEQEKLNDLVFVQC 633
WS YG L R AIRILSQ CSS R N E ++ K S EQ++L+DLVFVQ
Sbjct: 615 WSTYGESCLNLSRFAIRILSQTCSSSVSCRRNQIPVEHIYQSKNS-IEQKRLSDLVFVQY 674
BLAST of CmaCh16G010470 vs. TAIR 10
Match: AT4G15020.2 (hAT transposon superfamily ) HSP 1 Score: 335.9 bits (860), Expect = 7.4e-92 Identity = 221/690 (32.03%), Postives = 340/690 (49.28%), Query Frame = 0
Query: 5 RDACWEHCVLVD-ATRQKVRCNYCQREF-SGGVYRMKFHLAQIKNKDIVPCAEVPIDVRD 64
+D W+HC + R ++RC YC++ F GG+ R+K HLA K + + C +VP DVR
Sbjct: 15 QDNAWKHCEIYKYGDRLQMRCLYCRKMFKGGGITRVKEHLAGKKGQGTI-CDQVPEDVRL 74
Query: 65 RIQGIL-STPKKQRAPKKPK------------------------------------VDME 124
+Q + T ++QR K V E
Sbjct: 75 FLQQCIDGTVRRQRKRHKSSSEPLSVASLPPIEGDMMVVQPDVNDGFKSPGSSDVVVQNE 134
Query: 125 TATNG---QQHSSSASGGIHHGSSGQNES----NCPSTLPCSSPSAQPLIDDAQKQKKDE 184
+ +G Q+ S +GS+ N + + +P + S + ++ + + +++
Sbjct: 135 SLLSGRTKQRTYRSKKNAFENGSASNNVDLIGRDMDNLIPVAISSVKNIVHPSFRDRENT 194
Query: 185 TDKKVAVFFFHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPSYDKLKSTLLDKVKGDIQN 244
+ F F F A S+ +Q M++AIA G G AP++D L+ +L ++
Sbjct: 195 IHMAIGRFLFGIGADFDAVNSVNFQPMIDAIASGGFGVSAPTHDDLRGWILKNCVEEMAK 254
Query: 245 SYKKYRDEWKETGCTILCNSWSDGRTKSFLIISITCSKGTLFLKSVNISGREDDATYLSD 304
+ + WK TGC+IL + + L + C + +FLKSV+ S A L +
Sbjct: 255 EIDECKAMWKRTGCSILVEELNSDKGFKVLNFLVYCPEKVVFLKSVDASEVLSSADKLFE 314
Query: 305 LLETIVLEVGVENVVQVITDATASYVYAGRLLMTKYTSLFWSPCVSYCVNQMLEDLSKIE 364
LL +V EVG NVVQVIT YV AG+ LM Y SL+W PC ++C++QMLE+ K+
Sbjct: 315 LLSELVEEVGSTNVVQVITKCDDYYVDAGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLG 374
Query: 365 WVGTVLDEAKIIARYVYSHAWILDTMRKFTSGKELIRPRITRFVTNFLSLRSIVFLEDGL 424
W+ +++A+ I R+VY+H+ +L+ M KFTSG +++ P + TNF +L I L+ L
Sbjct: 375 WISETIEQAQAITRFVYNHSGVLNLMWKFTSGNDILLPAFSSSATNFATLGRIAELKSNL 434
Query: 425 KHMFAHSEWQSSIYSRRPDAQAILSFLYLDRFWKDAREAVNISEPLIRILRLVDGD-MPA 484
+ M +EW YS P +++ L + FWK +++ PL+R LR+V + PA
Sbjct: 435 QAMVTSAEWNECSYSEEPSG-LVMNALTDEAFWKAVALVNHLTSPLLRALRIVCSEKRPA 494
Query: 485 MGYIYEGIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHTTLHTAAAFLNPSIFYNP 544
MGY+Y + RAK +K + ED Y+ W IDR W Q H L A FLNP +FYN
Sbjct: 495 MGYVYAALYRAKDAIKTHLVNRED-YIIYWKIIDRWWEQQQHIPLLAAGFFLNPKLFYNT 554
Query: 545 NFKIDLRIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGALG--------------DW 604
N +I + + + ++ DK + +I +E +Y A G G +W
Sbjct: 555 NEEIRSELILSVLDCIERLVPDDKIQDKIIKELTSYKTAGGVFGRNLAIRARDTMLPAEW 614
Query: 605 WSGYGYEIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKKRSRTEQEKLNDLVFVQC 633
WS YG L R AIRILSQ CSS R N E ++ K S EQ++L+DLVFVQ
Sbjct: 615 WSTYGESCLNLSRFAIRILSQTCSSSVSCRRNQIPVEHIYQSKNS-IEQKRLSDLVFVQY 674
BLAST of CmaCh16G010470 vs. TAIR 10
Match: AT3G17450.1 (hAT dimerisation domain-containing protein ) HSP 1 Score: 317.4 bits (812), Expect = 2.7e-86 Identity = 189/659 (28.68%), Postives = 329/659 (49.92%), Query Frame = 0
Query: 6 DACWEHCVLVDATRQKVRCNYCQREFSGGVYRMKFHLAQIKNKDIVPCAEVPIDVRDRIQ 65
D WEH + D ++KV+CNYC + SGG+ R K HLA+I ++ PC P +V +I+
Sbjct: 133 DPGWEHGIAQDERKKKVKCNYCNKIVSGGINRFKQHLARIPG-EVAPCKTAPEEVYVKIK 192
Query: 66 GILSTPKKQRAPKKPKVDMETAT------------------------------NGQ--QH 125
+ + + +P +M T NG+ +
Sbjct: 193 ENMKWHRAGKRQNRPDDEMGALTFRTVSQDPDQEEDREDHDFYPTSQDRLMLGNGRFSKD 252
Query: 126 SSSASGGIHHGSSGQNESNCPSTLPCSSPSA---QPLIDDAQKQ---KKDETDKKVAVFF 185
+ + S + ++ +P SPS+ + L + +KD T ++ F
Sbjct: 253 KRKSFDSTNMRSVSEAKTKRARMIPFQSPSSSKQRKLYSSCSNRVVSRKDVT-SSISKFL 312
Query: 186 FHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPSYDKLKSTLLDKVKGDIQNSYKKYRDEW 245
H +P AA SLY+Q+M+ I YG G+ PS LL + I++ ++YR W
Sbjct: 313 HHVGVPTEAANSLYFQKMIELIGMYGEGFVVPSSQLFSGRLLQEEMSTIKSYLREYRSSW 372
Query: 246 KETGCTILCNSWSDGRTKSFLIISITCSKGTLFLKSVNISGREDDATYLSDLLETIVLEV 305
TGC+I+ ++W++ K + ++C +G F S++ + +DA L L+ +V ++
Sbjct: 373 VVTGCSIMADTWTNTEGKKMISFLVSCPRGVYFHSSIDATDIVEDALSLFKCLDKLVDDI 432
Query: 306 GVENVVQVITDATASYVYAGRLLMTKYTSLFWSPCVSYCVNQMLEDLSKIEWVGTVLDEA 365
G ENVVQVIT TA + AG+LL K +L+W+PC +C +LED SK+E+V L++A
Sbjct: 433 GEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEFVSECLEKA 492
Query: 366 KIIARYVYSHAWILDTMR-KFTSGKELIRPRITRFVTNFLSLRSIVFLEDGLKHMFAHSE 425
+ I R++Y+ W+L+ M+ +FT G +L+RP + R + F +L+S++ + L+ +F
Sbjct: 493 QRITRFIYNQTWLLNLMKNEFTQGLDLLRPAVMRHASGFTTLQSLMDHKASLRGLFQSDG 552
Query: 426 W-QSSIYSRRPDAQAILSFLYLDRFWKDAREAVNISEPLIRILRLVD--GDMPAMGYIYE 485
W S ++ + + + + FWK + + +P+++++ +++ GD +M Y Y
Sbjct: 553 WILSQTAAKSEEGREVEKMVLSAVFWKKVQYVLKSVDPVMQVIHMINDGGDRLSMPYAYG 612
Query: 486 GIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHTTLHTAAAFLNPSIFYNPNFKIDL 545
+ AK+ +K+ ++ KY P W I+ RWN H L+ AA F NP+ Y P+F
Sbjct: 613 YMCCAKMAIKSIHSDDARKYGPFWRVIEYRWNPLFHHPLYVAAYFFNPAYKYRPDFMAQS 672
Query: 546 RIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGALGD--------------WWSGYGY 605
+ G E ++++ + ++ + P Y A+ G WW +G
Sbjct: 673 EVVRGVNECIVRLEPDNTRRITALMQIPDYTCAKADFGTDIAIGTRTELDPSAWWQQHGI 732
Query: 606 EIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKKRSRTEQEKLNDLVFVQCNLWLQ 609
LQRVA+RILS CSS GC WS ++ ++S+ +S+ ++ DL +V NL L+
Sbjct: 733 SCLELQRVAVRILSHTCSSVGCEP-KWSVYDQVNSQCQSQFGKKSTKDLTYVHYNLRLR 788
BLAST of CmaCh16G010470 vs. TAIR 10
Match: AT3G22220.1 (hAT transposon superfamily ) HSP 1 Score: 311.2 bits (796), Expect = 2.0e-84 Identity = 205/687 (29.84%), Postives = 340/687 (49.49%), Query Frame = 0
Query: 5 RDACWEHC-VLVDATRQKVRCNYCQREF-SGGVYRMKFHLAQIKNKDIVPCAEVPIDVRD 64
+D+ W+HC V R ++RC YC++ F GG+ R+K HLA K + + C +VP +VR
Sbjct: 15 QDSAWKHCEVYKYGDRVQMRCLYCRKMFKGGGITRVKEHLAGKKGQGTI-CDQVPDEVRL 74
Query: 65 RIQGIL-STPKKQRAPKK-----------PKVDMET-------ATNG-QQHSSSASGGIH 124
+Q + T ++QR +K P ++ET NG + SS G
Sbjct: 75 FLQQCIDGTVRRQRKRRKSSPEPLPIAYFPPCEVETQVAASSDVNNGFKSPSSDVVVGQS 134
Query: 125 HGSSGQN--------------------ESNCPSTLPCSSPSAQPLIDDAQKQKKDETDKK 184
G + Q + + + +P + S + ++ K+++
Sbjct: 135 TGRTKQRTYRSRKNNAFERNDLANVEVDRDMDNLIPVAISSVKNIVHPTSKEREKTVHMA 194
Query: 185 VAVFFFHNSIPFSAAKSLYYQEMVNAIAEYGVGYRAPSYDKLKSTLLDKVKGDIQNSYKK 244
+ F F F AA S+ Q ++AI G G P+++ L+ +L +++ +
Sbjct: 195 MGRFLFDIGADFDAANSVNVQPFIDAIVSGGFGVSIPTHEDLRGWILKSCVEEVKKEIDE 254
Query: 245 YRDEWKETGCTILCNSWSDGRTKSFLIISITCSKGTLFLKSVNISGREDDATYLSDLLET 304
+ WK TGC++L + L + C + +FLKSV+ S D L +LL+
Sbjct: 255 CKTLWKRTGCSVLVQELNSNEGPLILKFLVYCPEKVVFLKSVDASEILDSEDKLYELLKE 314
Query: 305 IVLEVGVENVVQVITDATASYVYAGRLLMTKYTSLFWSPCVSYCVNQMLEDLSKIEWVGT 364
+V E+G NVVQVIT Y AG+ LM Y SL+W PC ++C+++MLE+ K++W+
Sbjct: 315 VVEEIGDTNVVQVITKCEDHYAAAGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIRE 374
Query: 365 VLDEAKIIARYVYSHAWILDTMRKFTSGKELIRPRITRFVTNFLSLRSIVFLEDGLKHMF 424
++++A+ + R +Y+H+ +L+ MRKFT G ++++P T TNF ++ I L+ L+ M
Sbjct: 375 IIEQARTVTRIIYNHSGVLNLMRKFTFGNDIVQPVCTSSATNFTTMGRIADLKPYLQAMV 434
Query: 425 AHSEWQSSIYSRRPDAQAILSFLYLDRFWKDAREAVNISEPLIRILRLVDGD-MPAMGYI 484
SEW YS+ A+ + + FWK A +I+ P++R+LR+V + PAMGY+
Sbjct: 435 TSSEWNDCSYSKEAGGLAMTETINDEDFWKALTLANHITAPILRVLRIVCSERKPAMGYV 494
Query: 485 YEGIERAKVEVKAYYNGIEDKYMPIWDTIDRRWNLQLHTTLHTAAAFLNPSIFYNPNFKI 544
Y + RAK +K ++Y+ W IDR W L L+ A +LNP FY+ + ++
Sbjct: 495 YAAMYRAKEAIKTNL-AHREEYIVYWKIIDRWW---LQQPLYAAGFYLNPKFFYSIDEEM 554
Query: 545 DLRIRNGFQEAMLKMATTDKDKMEITREHPAYVNAQGALG--------------DWWSGY 604
I + + K+ + + ++ +Y NA G G +WWS Y
Sbjct: 555 RSEIHLAVVDCIEKLVPDVNIQDIVIKDINSYKNAVGIFGRNLAIRARDTMLPAEWWSTY 614
Query: 605 GYEIPTLQRVAIRILSQPCSSYGCSRWNWSTFETLHSKKRSRTEQEKLNDLVFVQCNLWL 633
G L R AIRILSQ CSS S N ++ ++ K S E+++LNDLVFVQ N+ L
Sbjct: 615 GESCLNLSRFAIRILSQTCSSSIGSVRNLTSISQIYESKNS-IERQRLNDLVFVQYNMRL 674
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003656 | Zinc finger, BED-type | PFAM | PF02892 | zf-BED | coord: 8..42
e-value: 9.2E-5
score: 22.3 |
| IPR008906 | HAT, C-terminal dimerisation domain | PFAM | PF05699 | Dimer_Tnp_hAT | coord: 540..604
e-value: 1.2E-10
score: 41.0 |
| IPR007021 | Domain of unknown function DUF659 | PFAM | PF04937 | DUF659 | coord: 179..330
e-value: 2.5E-54
score: 183.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..134 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 85..128 |
| None | No IPR available | PANTHER | PTHR32166:SF55 | BINDING PROTEIN, PUTATIVE-RELATED | coord: 1..647 |
| None | No IPR available | PANTHER | PTHR32166 | OSJNBA0013A04.12 PROTEIN | coord: 1..647 |
| IPR012337 | Ribonuclease H-like superfamily | SUPERFAMILY | 53098 | Ribonuclease H-like | coord: 202..605 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
|
