CmaCh16G010150 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G010150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	scarecrow-like protein 18
Location	Cma_Chr16: 7809251 .. 7810956 (+)
RNA-Seq Expression	CmaCh16G010150
Synteny	CmaCh16G010150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGGACCCTTTCCAATTGCGTCAATTACTAATCCGTTGTGCCCATTTCATCTCTCAATCGGACTTCCTCTCAGCTCATCGTTTTCTTTCCATTATCTCTTCAAACTCTTCTCCTTATGGCGATGCCACTCAAAGATTGCTTCATTATTTCTCTTCTTCACTCTCCCATCGCCTCCCCTCTTGTTCTTCTTCTTCTTCGTCGTTCCAAGAAGATGGGCTTCAATCTTGCTATTTATCATTGAATCAAATCACACCCTTTATTAGATTTTGTCATTTGACTGCAAATCAAGCCATTTTGGAAGCTATTGAGGATTGTGGGATGGTTCATGTTGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGATGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTTGCCGTCAATTGCGTTCTCTACTTGCACAGGTACTTAACCTACCATTTAAGAAAGTATTTAGCTTGTTACGAACTCACGGTTAGCAGATATTGTTCTCTTTGAGCTTTTTCTTTTACGCTTCCCCTCAAAGTTTTTAAAACGTGTCTTCTAGTAAGAGGTTTCCGTATTCTTGTAAAAATGCTTCCTTCTCCCCTAATTGATGCGAGATCTCACAATCCACCCCCTTCAGGGACTAATGTGTTAAAACGTGTCTTCTAGGGAGAAATTTTCACTCCCTTATAAAGAATGTTCCGTTTTCCTCTCCAATCGATGCGAGATCTCACAATTCACCCCTCTTTAGAGACCAGCATCCTCGCTGACACTCGTTCCCTTCCCCAATCGATGTGGACCTCCCAATCCACCCTCTTTGGAGTCGTATGTCCTTGTTAGCACATTGCGTTGTGTCCAACCCCTTTAAGGCTCAACCTTTTCGCTGGCACATAGCTTCGTGATATTGTTCTTTTTTTGCTTTCCCTTTTGAACTTCCTATCAATGTTTTTTAAAACTCATCTTATAGAAAAAAAATTTCACACCCTTATAAAAAAATGATTCATTCTCCTTCGTAAGTGATGTGGGATCTCATATGGTAAATTTACAGACTTTTGAAGGACGATCTTTGGCGATTGCTTCATAAAATAAAGGCCTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGACTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGACGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCTGAGGAAGGCAACAAGAGAAGGCAACGCCATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTAGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTCTCACAAGCCAAACTCCTTCTAAGGCTTCATTACCCCTCCGAAGGCTACCATCTTCAAACCCTTCATGATTCCCTTTTTCTTGGTTGGCAAAATAGACCCCTTTTTTCAGTCTCTTCATGGCATTGA

mRNA sequence

ATGCCAATGGACCCTTTCCAATTGCGTCAATTACTAATCCGTTGTGCCCATTTCATCTCTCAATCGGACTTCCTCTCAGCTCATCGTTTTCTTTCCATTATCTCTTCAAACTCTTCTCCTTATGGCGATGCCACTCAAAGATTGCTTCATTATTTCTCTTCTTCACTCTCCCATCGCCTCCCCTCTTGTTCTTCTTCTTCTTCGTCGTTCCAAGAAGATGGGCTTCAATCTTGCTATTTATCATTGAATCAAATCACACCCTTTATTAGATTTTGTCATTTGACTGCAAATCAAGCCATTTTGGAAGCTATTGAGGATTGTGGGATGGTTCATGTTGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGATGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTTGCCGCCTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGACTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGACGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCTGAGGAAGGCAACAAGAGAAGGCAACGCCATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTAGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTCTCACAAGCCAAACTCCTTCTAAGGCTTCATTACCCCTCCGAAGGCTACCATCTTCAAACCCTTCATGATTCCCTTTTTCTTGGTTGGCAAAATAGACCCCTTTTTTCAGTCTCTTCATGGCATTGA

Coding sequence (CDS)

ATGCCAATGGACCCTTTCCAATTGCGTCAATTACTAATCCGTTGTGCCCATTTCATCTCTCAATCGGACTTCCTCTCAGCTCATCGTTTTCTTTCCATTATCTCTTCAAACTCTTCTCCTTATGGCGATGCCACTCAAAGATTGCTTCATTATTTCTCTTCTTCACTCTCCCATCGCCTCCCCTCTTGTTCTTCTTCTTCTTCGTCGTTCCAAGAAGATGGGCTTCAATCTTGCTATTTATCATTGAATCAAATCACACCCTTTATTAGATTTTGTCATTTGACTGCAAATCAAGCCATTTTGGAAGCTATTGAGGATTGTGGGATGGTTCATGTTGTGGATTTTGATATCATTCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGAGCGGTTTGCTTCTCCTATGCTTCGTATTACTGCCATTGGTCTTGATCTTACCTCTCTTCTTAAGACGGGTGATAGGCTTTCCAAATTTGCTCATTCACTTGGCTTGAGGTTTCATTTTCATCCTCTTCTTCTTCTCAATGATCATGATGTTGACCGTCTTGTCCCCGCCGCTCTCACGCTCTTCCCCGATGAAGCGCTTGCCGCCTTGAATCCCAAAGTGGTGACCATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCCCTAATATTTGACTCATTGGAAGCAACTATGCCTCAAAATAGCAAAGAGAGGCTAGACGTGGAGCAAGTTTGGTTTGGGAGGGAAATAGACGACGTCGTTTCTGAGGAAGGCAACAAGAGAAGGCAACGCCATGAAAGGTATGAATCATGGGAAATAATGCTTAAAAGTTTAGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTCTCACAAGCCAAACTCCTTCTAAGGCTTCATTACCCCTCCGAAGGCTACCATCTTCAAACCCTTCATGATTCCCTTTTTCTTGGTTGGCAAAATAGACCCCTTTTTTCAGTCTCTTCATGGCATTGA

Protein sequence

MPMDPFQLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRLPSCSSSSSSFQEDGLQSCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDFDIIHGVQWPPLMQALAERFASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRFHFHPLLLLNDHDVDRLVPAALTLFPDEALAALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLHDSLFLGWQNRPLFSVSSWH

Homology

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BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot
Match: Q9ZWC5 (Scarecrow-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=SCL18 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.2e-94
Identity = 198/404 (49.01%), Postives = 257/404 (63.61%), Query Frame = 0


Query: 8   LRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------- 67
           LR+LL   A+F+SQS+F +A   LSI+S NSSP+GD+T+RL+H F+ +LS R+       
Sbjct: 41  LRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQDQ 100

Query: 68  -----------PSCSSSSSSF---------------QEDGLQSC-YLSLNQITPFIRFCH 127
                          S+S+ F                    +SC YL LNQ+TPFIRF H
Sbjct: 101 TAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGH 160

Query: 128 LTANQAILEAIE--DCGMVHVVDFDIIHGVQWPPLMQALAERFAS-----PMLRITAIGL 187
           LTANQAIL+A E  D G +H++D DI  G+QWPPLMQALAER ++     P LRIT  G 
Sbjct: 161 LTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGR 220

Query: 188 DLTSLLKTGDRLSKFAHSLGLRFHFHPLLLLNDHDVDRLVPAAL---------------- 247
           D+T L +TGDRL++FA SLGL+F FH L+++ +     L+   L                
Sbjct: 221 DVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCV 280

Query: 248 ----TLFPDE---------ALAALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDS 307
                +F D+         A+ +LN ++VT+AE+EAN     F+ RF EA++HY  IFDS
Sbjct: 281 HFLHKIFNDDGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDS 340

Query: 308 LEATMPQNSKERLDVEQVWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLS 342
           LEAT+P NS+ERL +EQ WFG+EI DVV+ E  +R+QRH R+E WE M+K  GF N+P+ 
Sbjct: 341 LEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVNVPIG 400

[Close]

BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot
Match: Q84MM9 (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOC1 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.3e-65
Identity = 159/389 (40.87%), Postives = 213/389 (54.76%), Query Frame = 0


Query: 9   RQLLIRCAHFISQSDFLSAHRFLSII-SSNSSPYGDATQRLLHYFSSSLSHRLPSCSSSS 68
           R LL+ CA  + + D  +A R   I+ ++ +SP GDA  RL ++F+ +L+ R+ + +   
Sbjct: 51  RDLLLACADLLQRGDLPAARRAAEIVLAAAASPRGDAADRLAYHFARALALRVDAKAGHG 110

Query: 69  SSFQEDGL-----QSCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDFDIIHGVQ 128
                 G         YL+ NQI PF+RF HLTANQAILEA++    VH++D D +HGVQ
Sbjct: 111 HVVVGGGAARPASSGAYLAFNQIAPFLRFAHLTANQAILEAVDGARRVHILDLDAVHGVQ 170

Query: 129 WPPLMQALAER----FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRFHFHPLLL-- 188
           WPPL+QA+AER       P +R+T  G D  +LL+TG+RL  FA S+ L FHF PLLL  
Sbjct: 171 WPPLLQAIAERADPALGPPEVRVTGAGADRDTLLRTGNRLRAFARSIHLPFHFTPLLLSC 230

Query: 189 --LNDHDV------------DRLVPAALTLFPDEALA----------------------- 248
                H V                   L   PDE LA                       
Sbjct: 231 ATTAPHHVAGTSTGAAAAASTAAAATGLEFHPDETLAVNCVMFLHNLAGHDELAAFLKWV 290

Query: 249 -ALNPKVVTIAEKEA------NFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDV 308
            A++P VVTIAE+EA        +     +R   A++HYS +F++LEAT+P  S+ERL V
Sbjct: 291 KAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAV 350

Query: 309 EQVWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHY 342
           EQ   GREI+  V   G +  +  ER   W    ++ GF+  PLS FA+SQA+LLLRLHY
Sbjct: 351 EQEVLGREIEAAVGPSGGRWWRGIER---WGGAARAAGFAARPLSAFAVSQARLLLRLHY 410

[Close]

BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot
Match: G7L166 (GRAS family protein RAM1 OS=Medicago truncatula OX=3880 GN=RAM1 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 6.9e-62
Identity = 153/378 (40.48%), Postives = 212/378 (56.08%), Query Frame = 0


Query: 7   QLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------ 66
           QL  LL+ CA  +++ +++ A R+L  ++   +P GD+ QR+   F+ SLS RL      
Sbjct: 296 QLVHLLLACAEAVAKGEYMLARRYLHQLNRVVTPLGDSMQRVASCFTESLSARLAATLTT 355

Query: 67  ---------PSCSSSSSS------FQEDGLQ--SCYLSLNQITPFIRFCHLTANQAILEA 126
                    PS  SSSSS      F  + ++    Y  + Q  P+I+F H TANQAI EA
Sbjct: 356 KSSSTKKLAPSSLSSSSSSSCLSTFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEA 415

Query: 127 IEDCGMVHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFA 186
            E    VHV+D DI+ G QWP  MQALA R   +P LRIT +G  + S+ +TG  L++ A
Sbjct: 416 FEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELA 475

Query: 187 HSLGLRFHFHP----LLLLNDHDVDRLVPAALTL--------FPDEALAAL-------NP 246
           HSL + F FHP    L  L  H  +R V  AL +         P   L  L        P
Sbjct: 476 HSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAP 535

Query: 247 KVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDD 306
            +VT+ E+EA+ N P F+ RFLEAL++YS IFDSL+AT P  S  R  VEQ  F  EI +
Sbjct: 536 NIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRN 595

Query: 307 VVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLH 342
           +V+ EG +R +RHER E W  +++  GF  +PLSP A++Q+++LL L Y  +GY L    
Sbjct: 596 IVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGL-YSCDGYRLTEDK 655

[Close]

BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot
Match: A0A145P7T2 (GRAS family protein RAM1 OS=Lotus japonicus OX=34305 GN=RAM1 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 4.5e-61
Identity = 148/376 (39.36%), Postives = 208/376 (55.32%), Query Frame = 0


Query: 7   QLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------ 66
           QL  LL+ CA  +++ +++ A R+L  ++   +P GD+ QR+   F+ SLS RL      
Sbjct: 317 QLVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTESLSARLAATLTT 376

Query: 67  -PSCSSSSSSFQEDGLQSC--------------YLSLNQITPFIRFCHLTANQAILEAIE 126
            P   S+ +S       SC              Y  + Q  P+++F H TANQAI EA E
Sbjct: 377 KPQSISNGTSMPRSSSSSCLSPFPSNSIEVLKIYQIVYQACPYVKFAHFTANQAIFEAFE 436

Query: 127 DCGMVHVVDFDIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHS 186
               VHV+D DI+ G QWP  MQALA R   +P LRIT +G  + S+ +TG  L++ AHS
Sbjct: 437 AEERVHVIDLDILQGYQWPTFMQALAARPGGAPFLRITGVGPCIDSVRETGRCLTELAHS 496

Query: 187 LGLRFHFHP----LLLLNDHDVDRLVPAALTL--------FPDEALAAL-------NPKV 246
           L + F FHP    L  L  H  +R V  AL +         P   L  L        P +
Sbjct: 497 LRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGSHLGNLLSMIRDQAPNI 556

Query: 247 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVV 306
           VT+ E+EA+ N P F+ RFLEAL++YS IFDSL+AT P  S +R  VEQ  F  EI ++V
Sbjct: 557 VTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIV 616

Query: 307 SEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLHDS 342
           + EG +R +RHER E W  +++  GF  + LSP A++Q+++LL L Y  +GY L      
Sbjct: 617 ACEGAERIERHERLEKWRKIMEGKGFRGVALSPNAVTQSRILLGL-YSCDGYRLTEDKGC 676

[Close]

BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot
Match: A0A0M4FMK2 (GRAS family protein RAM1 OS=Petunia hybrida OX=4102 GN=RAM1 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 3.8e-60
Identity = 148/366 (40.44%), Postives = 208/366 (56.83%), Query Frame = 0


Query: 7   QLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------ 66
           QL  LL+ CA  +S+ D++ A R+L  ++   +P GD+ QR+   F+ +LS RL      
Sbjct: 329 QLVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLAT 388

Query: 67  -PSCSSSS--SSFQEDGLQ--SCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDF 126
            PS S+    + F  + L+    Y  L Q  P+++F H TANQAI EA E    VH++D 
Sbjct: 389 KPSTSALKPFNPFPPNSLEILKIYQILYQACPYVKFAHFTANQAIFEAFEAEERVHIIDL 448

Query: 127 DIIHGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRFHFHP- 186
           DI+ G QWP  MQALA R   +P LRIT +G    ++ +TG  L++ AHSL + F FHP 
Sbjct: 449 DILQGYQWPAFMQALAARPGGAPFLRITGVGPSPEAVRETGRCLTELAHSLHVPFEFHPV 508

Query: 187 ---LLLLNDHDVDRLVPAALTL--------FPDEALAAL-------NPKVVTIAEKEANF 246
              L  L  H  +R V  AL +         P   +  L        P +VTI E+EA+ 
Sbjct: 509 GEQLEDLKPHMFNRRVGEALAVNSVNRLHRVPVNCIGNLLAMIRDQAPNIVTIVEQEASH 568

Query: 247 NHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVVSEEGNKRRQR 306
           N P F+ RFLEAL++YS IFDSL+AT P +S +R  +EQ  F  EI ++VS EG +R  R
Sbjct: 569 NGPYFLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYIFAPEIMNIVSCEGPERVVR 628

Query: 307 HERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLHDSLFLGWQNRPL 342
           HER E W  +++  GF  + LS  A++Q+K+LL L Y  +GY L      L LGWQ+R +
Sbjct: 629 HERLEKWRRLMEGKGFKGVALSANAVTQSKILLGL-YSCDGYKLTEDDGCLLLGWQDRAI 688

[Close]

BLAST of CmaCh16G010150 vs. TAIR 10
Match: AT1G55580.1 (GRAS family transcription factor )

HSP 1 Score: 345.9 bits (886), Expect = 3.7e-95
Identity = 198/404 (49.01%), Postives = 257/404 (63.61%), Query Frame = 0


Query: 8   LRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------- 67
           LR+LL   A+F+SQS+F +A   LSI+S NSSP+GD+T+RL+H F+ +LS R+       
Sbjct: 41  LRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRQQQDQ 100

Query: 68  -----------PSCSSSSSSF---------------QEDGLQSC-YLSLNQITPFIRFCH 127
                          S+S+ F                    +SC YL LNQ+TPFIRF H
Sbjct: 101 TAETVATWTTNEMTMSNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGH 160

Query: 128 LTANQAILEAIE--DCGMVHVVDFDIIHGVQWPPLMQALAERFAS-----PMLRITAIGL 187
           LTANQAIL+A E  D G +H++D DI  G+QWPPLMQALAER ++     P LRIT  G 
Sbjct: 161 LTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCGR 220

Query: 188 DLTSLLKTGDRLSKFAHSLGLRFHFHPLLLLNDHDVDRLVPAAL---------------- 247
           D+T L +TGDRL++FA SLGL+F FH L+++ +     L+   L                
Sbjct: 221 DVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCV 280

Query: 248 ----TLFPDE---------ALAALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDS 307
                +F D+         A+ +LN ++VT+AE+EAN     F+ RF EA++HY  IFDS
Sbjct: 281 HFLHKIFNDDGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDS 340

Query: 308 LEATMPQNSKERLDVEQVWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLS 342
           LEAT+P NS+ERL +EQ WFG+EI DVV+ E  +R+QRH R+E WE M+K  GF N+P+ 
Sbjct: 341 LEATLPPNSRERLTLEQRWFGKEILDVVAAEETERKQRHRRFEIWEEMMKRFGFVNVPIG 400

[Close]

BLAST of CmaCh16G010150 vs. TAIR 10
Match: AT5G66770.1 (GRAS family transcription factor )

HSP 1 Score: 203.0 bits (515), Expect = 3.9e-52
Identity = 145/378 (38.36%), Postives = 206/378 (54.50%), Query Frame = 0


Query: 4   DPFQLRQLLIR----CAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHR 63
           D F L   L++    CA  IS SD   A + L  I  + S  GD T+R+  YF+ +LS+R
Sbjct: 209 DDFDLEPPLLKAIYDCAR-ISDSDPNEASKTLLQIRESVSELGDPTERVAFYFTEALSNR 268

Query: 64  L----PSCSSSSSSFQEDGLQSCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDF 123
           L    P+ SSSSSS ++  L   Y +LN   P+ +F HLTANQAILEA E    +H+VDF
Sbjct: 269 LSPNSPATSSSSSSTED--LILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDF 328

Query: 124 DIIHGVQWPPLMQALAERFASPMLRITAIGLDL--------TSLLKTGDRLSKFAHSLGL 183
            I+ G+QWP L+QALA R +    +I   G+           SL+ TG+RL  FA  L L
Sbjct: 329 GIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDL 388

Query: 184 RFHFHPLL----LLN------DHDVDRLVPAALTLFP---------DEAL---AALNPKV 243
            F F P+L    LLN      D D    V   L L+          D AL    +LNP+V
Sbjct: 389 NFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRV 448

Query: 244 VTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVV 303
           VT+ E E + N   F  R   AL  YS +F+SLE  + ++S+ER+ VE+  FGR I  ++
Sbjct: 449 VTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLI 508

Query: 304 S-EEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHL-QTLH 342
             E+    R+R E  E W +++++ GF ++ LS +A+SQAK+LL  +  S  Y + ++  
Sbjct: 509 GPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKP 568

[Close]

BLAST of CmaCh16G010150 vs. TAIR 10
Match: AT3G50650.1 (GRAS family transcription factor )

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-50
Identity = 144/377 (38.20%), Postives = 197/377 (52.25%), Query Frame = 0


Query: 2   PMDPFQLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHR-L 61
           P   F L Q + +  H  ++         + I  S S   GD  QR+ +YF+ +LSH+  
Sbjct: 167 PQPDFDLNQPIFKAIHDYARKPETKPDTLIRIKESVSES-GDPIQRVGYYFAEALSHKET 226

Query: 62  PSCSSSSSSFQEDGLQSCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDFDIIHG 121
            S SSSSSS  ED + S Y +LN   P+ +F HLTANQAILEA      +H+VDF I  G
Sbjct: 227 ESPSSSSSSSLEDFILS-YKTLNDACPYSKFAHLTANQAILEATNQSNNIHIVDFGIFQG 286

Query: 122 VQWPPLMQALAERFASPMLRITAIGLDL--------TSLLKTGDRLSKFAHSLGLRFHFH 181
           +QW  L+QALA R +    RI   G+           SL+ TG+RL  FA  L L F F+
Sbjct: 287 IQWSALLQALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFY 346

Query: 182 PLL----LLN------DHDVDRLVPAALTLFP--DEALA----------ALNPKVVTIAE 241
           P+L    LLN      D D   +V   L L+   DE             +LNP++VT+ E
Sbjct: 347 PVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVGTALRLARSLNPRIVTLGE 406

Query: 242 KEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVV--SEE 301
            E + N   F  R   +L  YS +F+SLE  + ++SKERL VE+V FGR I D+V   ++
Sbjct: 407 YEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDD 466

Query: 302 GNKRRQRH---ERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHL-QTLHD 342
            NK   R    E  E W ++++  GF  +  S +A+SQAKLLL  +  S  Y L ++   
Sbjct: 467 NNKPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPG 526

[Close]

BLAST of CmaCh16G010150 vs. TAIR 10
Match: AT3G54220.1 (GRAS family transcription factor )

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-48
Identity = 134/367 (36.51%), Postives = 196/367 (53.41%), Query Frame = 0


Query: 8   LRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHR-LPSCSSS 67
           L  LL++CA  +S  +   A++ L  IS  S+PYG + QR+  YFS ++S R L SC   
Sbjct: 290 LLTLLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGI 349

Query: 68  SSSF------QEDGLQ--SCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDFDII 127
            ++       Q   L+  S +   N I+P ++F H TANQAI EA E    VH++D DI+
Sbjct: 350 YAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIM 409

Query: 128 HGVQWPPLMQALAER-FASPMLRITAIGLDLTSLLKTGDRLSKFAHSLGLRFHFHPLLLL 187
            G+QWP L   LA R    P +R+T +G  + +L  TG RLS FA  LGL F F PL   
Sbjct: 410 QGLQWPGLFHILASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKLGLPFEFCPLA-- 469

Query: 188 NDHDVDRLVPAALTLFPDEALAA-----------------------LNPKVVTIAEKEAN 247
               V  L    L +   EA+A                        L PKVVT+ E++ +
Sbjct: 470 --EKVGNLDTERLNVRKREAVAVHWLQHSLYDVTGSDAHTLWLLQRLAPKVVTVVEQDLS 529

Query: 248 FNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVVSEEGNKRRQ 307
            +   F+ RF+EA+++YS +FDSL A+  + S+ER  VEQ    +EI +V++  G   R 
Sbjct: 530 -HAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSKEIRNVLA-VGGPSRS 589

Query: 308 RHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLHDSLFLGWQNRP 342
              ++ESW   ++  GF  I L+  A +QA LLL + +PS+GY L   + +L LGW++  
Sbjct: 590 GEVKFESWREKMQQCGFKGISLAGNAATQATLLLGM-FPSDGYTLVDDNGTLKLGWKDLS 649

[Close]

BLAST of CmaCh16G010150 vs. TAIR 10
Match: AT3G03450.1 (RGA-like 2 )

HSP 1 Score: 191.0 bits (484), Expect = 1.5e-48
Identity = 126/371 (33.96%), Postives = 194/371 (52.29%), Query Frame = 0


Query: 7   QLRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRL------ 66
           +L   L+ CA  I Q +   A   +  + + +     A  ++  YF+ +L+ R+      
Sbjct: 179 RLVHALVACAEAIHQENLNLADALVKRVGTLAGSQAGAMGKVATYFAQALARRIYRDYTA 238

Query: 67  --PSCSSSSSSFQEDGLQSCYLSLNQITPFIRFCHLTANQAILEAIEDCGMVHVVDFDII 126
               C++ + SF+E      Y S     P+++F H TANQAILEA+     VHV+D  + 
Sbjct: 239 ETDVCAAVNPSFEEVLEMHFYES----CPYLKFAHFTANQAILEAVTTARRVHVIDLGLN 298

Query: 127 HGVQWPPLMQALAER-FASPMLRITAIGLDLT----SLLKTGDRLSKFAHSLGLRFHFHP 186
            G+QWP LMQALA R    P  R+T IG   T    SL + G +L++FA ++G+ F F  
Sbjct: 299 QGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKG 358

Query: 187 LLLLNDHDVD----RLVPAALTLFPD-------------------EALAALNPKVVTIAE 246
           L   +  D++       P + TL  +                     + A+ P +VT+ E
Sbjct: 359 LAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSIEKLLNTVKAIKPSIVTVVE 418

Query: 247 KEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKERLDVEQVWFGREIDDVVSEEGN 306
           +EAN N  +F+ RF EAL++YS +FDSLE +    S++R+ + +V+ GR+I +VV+ EG+
Sbjct: 419 QEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRV-MSEVYLGRQILNVVAAEGS 478

Query: 307 KRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQTLHDSLFLGW 342
            R +RHE    W I +KS GF  I L   A  QA +LL L+   +GY ++     L +GW
Sbjct: 479 DRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGW 538

The following BLAST results are available for this feature:

BLAST of CmaCh16G010150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZWC5	5.2e-94	49.01	Scarecrow-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=SCL18 PE=2 SV=1	[more]
Q84MM9	2.3e-65	40.87	Protein MONOCULM 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOC1 PE=2 SV=1	[more]
G7L166	6.9e-62	40.48	GRAS family protein RAM1 OS=Medicago truncatula OX=3880 GN=RAM1 PE=1 SV=1	[more]
A0A145P7T2	4.5e-61	39.36	GRAS family protein RAM1 OS=Lotus japonicus OX=34305 GN=RAM1 PE=1 SV=1	[more]
A0A0M4FMK2	3.8e-60	40.44	GRAS family protein RAM1 OS=Petunia hybrida OX=4102 GN=RAM1 PE=2 SV=1	[more]

BLAST of CmaCh16G010150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55580.1	3.7e-95	49.01	GRAS family transcription factor	[more]
AT5G66770.1	3.9e-52	38.36	GRAS family transcription factor	[more]
AT3G50650.1	2.8e-50	38.20	GRAS family transcription factor	[more]
AT3G54220.1	1.2e-48	36.51	GRAS family transcription factor	[more]
AT3G03450.1	1.5e-48	33.96	RGA-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 8..199 e-value: 2.5E-54 score: 184.6
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 6..199 coord: 198..342
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 1..342 score: 80.795761
IPR030017	Scarecrow-like protein 18	PANTHER	PTHR31636:SF2	SCARECROW-LIKE PROTEIN 18	coord: 6..199 coord: 198..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G010150.1	CmaCh16G010150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010223	secondary shoot formation
cellular_component	GO:0005634	nucleus