CmaCh16G010110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G010110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ethylene-responsive transcription factor ERF027-like
Location	Cma_Chr16: 7766235 .. 7766738 (+)
RNA-Seq Expression	CmaCh16G010110
Synteny	CmaCh16G010110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTACCTCCTCCAATAGACATGGAAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCGACGTCGGAGATGGCAGCTGCTGCCTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCTGCCGCTGCAGCCGCGACAAAAAAGGTTGATCAAGGAGAAAGTAATAACCATAGCTGCCACCAGTCTCCACCTTCCGATGAGTTCGTTGATGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCATGACATGGCGGTGGGAATGCTGTTGCCGCCGCCGCGAATGAGTGGCTCGCCGTCATCACATGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

mRNA sequence

ATGGCCTCTACCTCCTCCAATAGACATGGAAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCGACGTCGGAGATGGCAGCTGCTGCCTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCTGCCGCTGCAGCCGCGACAAAAAAGGTTGATCAAGGAGAAAGTAATAACCATAGCTGCCACCAGTCTCCACCTTCCGATGAGTTCGTTGATGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCATGACATGGCGGTGGGAATGCTGTTGCCGCCGCCGCGAATGAGTGGCTCGCCGTCATCACATGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

Coding sequence (CDS)

ATGGCCTCTACCTCCTCCAATAGACATGGAAACTACAAGGGAGTCCGCTGCCGGAGTGGCAAATGGGTGTCGGAGATTCGTGAGCCACGTAAGACTACTCGAATATGGCTCGGCACGTATCCGACGTCGGAGATGGCAGCTGCTGCCTACGACGTGGCTGCGCTGGCTCTCAAGGGTAGCAATGCTGTTCTCAACTTCCCGGACTCGATTCGCTCCTACCCAATTCCGGCTTCCAAATCCCCAGCTGATATTCGTCTCGCTGCTGCCGCTGCAGCCGCGACAAAAAAGGTTGATCAAGGAGAAAGTAATAACCATAGCTGCCACCAGTCTCCACCTTCCGATGAGTTCGTTGATGAAGAGGCACTGTTCGGAATGCCCAATTTGCTGCATGACATGGCGGTGGGAATGCTGTTGCCGCCGCCGCGAATGAGTGGCTCGCCGTCATCACATGACTGCTACTCATGGAACTCCACCGGAGATGAAAATCTTTGGAGCTACCATTAG

Protein sequence

MASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGESNNHSCHQSPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSYH

Homology

[Close]

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot
Match: Q38Q39 (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 GN=ERF027 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 100/176 (56.82%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 12  YKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIR 71
           Y+G+RCRSGKWVSEIREPRKTTRIWLGTYP +EMAAAAYDVAA+ALKG  AVLNFP S+ 
Sbjct: 19  YRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVG 78

Query: 72  SYPIPASKSPADIRLAAAAAAATKKVDQGE--------------SNNHSCH-------QS 131
           SYP+P S S ADIR AAAAAAA K  ++GE              S    CH        S
Sbjct: 79  SYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSRARECHVDNDVGSSS 138

Query: 132 PPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
               EF+DEE +  MPNLL +MA GM++ PP   GS  S D  S  ++ DE+LW Y
Sbjct: 139 WCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDD--SPENSNDEDLWGY 192

[Close]

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot
Match: Q9CAN9 (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 GN=ERF026 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-43
Identity = 99/162 (61.11%), Postives = 115/162 (70.99%), Query Frame = 0


Query: 12  YKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIR 71
           Y+G+RCRSGKWVSEIREP+KTTR+WLGTYPT EMAAAAYDVAALALKG + +LNFPDS+ 
Sbjct: 90  YRGIRCRSGKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLG 149

Query: 72  SYPIPASKSPADIRLAAAAAAATK-----KVDQGESNNHSCHQSPPSDE--FVDEEALFG 131
           SYPIP S S A IR AAAAAAAT+      V  G+      + +  S    FVDEE L  
Sbjct: 150 SYPIPLSSSAAHIRCAAAAAAATRGAAGAAVKVGQKKEDKVYDTAESSTMGFVDEEELLN 209

Query: 132 MPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
           MP LL DMA GM++ PP M GSP S D  S  ++  E+LWSY
Sbjct: 210 MPGLLADMAKGMMVAPPWM-GSPPSDD--SPENSDGESLWSY 248

[Close]

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot
Match: Q9FJ90 (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 GN=ERF025 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 99/180 (55.00%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 2   ASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSN 61
           A+  S +H  ++G+R R+GKWVSEIREPRKTTRIWLGTYP  EMAAAAYDVAALALKG +
Sbjct: 55  ATGLSGKHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPD 114

Query: 62  AVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQG---------------ESNNHS 121
           AVLNFP    +Y  P S S ADIR AA+ AA  K+ DQG               E    S
Sbjct: 115 AVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVS 174

Query: 122 CHQSPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
           C+    S EF+DEEA+  MP LL +MA GML+ PPRM   P+  D    N  GD NLWSY
Sbjct: 175 CNSC--SLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGD-NLWSY 231

[Close]

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot
Match: Q9SJR0 (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-34
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 5   SSNRHGNYKGVRCR--SGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNA 64
           +  RH  Y+GVR R  S KWVSEIREPRK  RIWLGT+ T EMAA AYDVAALALKGS A
Sbjct: 8   NGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQA 67

Query: 65  VLNFPDSIRSYPIPASKSPADIRLAAAAAAA-------------TKKVDQGESNNHSCHQ 124
            LNFP+S+ S P P S SPADI+ AAA+AAA                   G +  +S + 
Sbjct: 68  ELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYD 127

Query: 125 SPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
           +   + F+DE+ +F MPN+L +MA GMLL PPR +   +++D   +   GD+ LW++
Sbjct: 128 NTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPG-GDDYLWNF 183

[Close]

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot
Match: P93835 (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=DREB1B PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-30
Identity = 84/174 (48.28%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 8   RHGNYKGVRCR-SGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNF 67
           RH  Y+GVR R SGKWVSE+REP K TRIWLGT+ T+EMAA A+DVAALAL+G +A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 68  PDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGE--SNNHSCHQ---------SPPSDE 127
            DS     IP S    DI+ AAA AA   + +  +  + NH             +P   E
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHGLDMEETMVEAIYTPEQSE 163

Query: 128 ---FVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
              ++DEE +FGMP LL +MA GMLLPPP +  + +    Y     GD +LWSY
Sbjct: 164 GAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHN----YDGEGDGDVSLWSY 213

[Close]

BLAST of CmaCh16G010110 vs. TAIR 10
Match: AT1G12630.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 100/176 (56.82%), Postives = 116/176 (65.91%), Query Frame = 0


Query: 12  YKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNFPDSIR 71
           Y+G+RCRSGKWVSEIREPRKTTRIWLGTYP +EMAAAAYDVAA+ALKG  AVLNFP S+ 
Sbjct: 19  YRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVG 78

Query: 72  SYPIPASKSPADIRLAAAAAAATKKVDQGE--------------SNNHSCH-------QS 131
           SYP+P S S ADIR AAAAAAA K  ++GE              S    CH        S
Sbjct: 79  SYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSRARECHVDNDVGSSS 138

Query: 132 PPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
               EF+DEE +  MPNLL +MA GM++ PP   GS  S D  S  ++ DE+LW Y
Sbjct: 139 WCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDD--SPENSNDEDLWGY 192

[Close]

BLAST of CmaCh16G010110 vs. TAIR 10
Match: AT5G52020.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 8.8e-42
Identity = 99/180 (55.00%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 2   ASTSSNRHGNYKGVRCRSGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSN 61
           A+  S +H  ++G+R R+GKWVSEIREPRKTTRIWLGTYP  EMAAAAYDVAALALKG +
Sbjct: 55  ATGLSGKHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPD 114

Query: 62  AVLNFPDSIRSYPIPASKSPADIRLAAAAAAATKKVDQG---------------ESNNHS 121
           AVLNFP    +Y  P S S ADIR AA+ AA  K+ DQG               E    S
Sbjct: 115 AVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQPGKEEELEEVS 174

Query: 122 CHQSPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
           C+    S EF+DEEA+  MP LL +MA GML+ PPRM   P+  D    N  GD NLWSY
Sbjct: 175 CNSC--SLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGD-NLWSY 231

[Close]

BLAST of CmaCh16G010110 vs. TAIR 10
Match: AT2G36450.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-35
Identity = 87/177 (49.15%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 5   SSNRHGNYKGVRCR--SGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNA 64
           +  RH  Y+GVR R  S KWVSEIREPRK  RIWLGT+ T EMAA AYDVAALALKGS A
Sbjct: 8   NGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQA 67

Query: 65  VLNFPDSIRSYPIPASKSPADIRLAAAAAAA-------------TKKVDQGESNNHSCHQ 124
            LNFP+S+ S P P S SPADI+ AAA+AAA                   G +  +S + 
Sbjct: 68  ELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMNSSYD 127

Query: 125 SPPSDEFVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
           +   + F+DE+ +F MPN+L +MA GMLL PPR +   +++D   +   GD+ LW++
Sbjct: 128 NTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPG-GDDYLWNF 183

[Close]

BLAST of CmaCh16G010110 vs. TAIR 10
Match: AT4G25490.1 (C-repeat/DRE binding factor 1 )

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 84/174 (48.28%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 8   RHGNYKGVRCR-SGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNF 67
           RH  Y+GVR R SGKWVSE+REP K TRIWLGT+ T+EMAA A+DVAALAL+G +A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 68  PDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGE--SNNHSCHQ---------SPPSDE 127
            DS     IP S    DI+ AAA AA   + +  +  + NH             +P   E
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDTTTTNHGLDMEETMVEAIYTPEQSE 163

Query: 128 ---FVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWSY 167
              ++DEE +FGMP LL +MA GMLLPPP +  + +    Y     GD +LWSY
Sbjct: 164 GAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHN----YDGEGDGDVSLWSY 213

[Close]

BLAST of CmaCh16G010110 vs. TAIR 10
Match: AT5G51990.1 (C-repeat-binding factor 4 )

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-29
Identity = 78/181 (43.09%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 8   RHGNYKGVRCR-SGKWVSEIREPRKTTRIWLGTYPTSEMAAAAYDVAALALKGSNAVLNF 67
           RH  Y+GVR R SGKWV E+REP K +RIWLGT+PT EMAA A+DVAALAL+G +A LNF
Sbjct: 50  RHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109

Query: 68  PDSIRSYPIPASKSPADIRLAAAAAAATKKVDQGESNNHSCHQSPPSDE----------- 127
            DS     IP +  P +I+ AA+ AA      Q E+       +  ++E           
Sbjct: 110 ADSAWRLRIPETTCPKEIQKAASEAA---MAFQNETTTEGSKTAAEAEEAAGEGVREGER 169

Query: 128 ----------FVDEEALFGMPNLLHDMAVGMLLPPPRMSGSPSSHDCYSWNSTGDENLWS 167
                     ++D+EAL GMPN   +MA GMLLPPP +  + +  D       GD +LWS
Sbjct: 170 RAEEQNGGVFYMDDEALLGMPNFFENMAEGMLLPPPEVGWNHNDFD-----GVGDVSLWS 222

The following BLAST results are available for this feature:

BLAST of CmaCh16G010110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38Q39	2.1e-43	56.82	Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9CAN9	4.6e-43	61.11	Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9FJ90	1.2e-40	55.00	Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SJR0	3.9e-34	49.15	Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 ...	[more]
P93835	2.6e-30	48.28	Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmaCh16G010110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12630.1	1.5e-44	56.82	Integrase-type DNA-binding superfamily protein	[more]
AT5G52020.1	8.8e-42	55.00	Integrase-type DNA-binding superfamily protein	[more]
AT2G36450.1	2.8e-35	49.15	Integrase-type DNA-binding superfamily protein	[more]
AT4G25490.1	1.8e-31	48.28	C-repeat/DRE binding factor 1	[more]
AT5G51990.1	3.0e-29	43.09	C-repeat-binding factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 49..69 score: 56.45 coord: 12..23 score: 37.58
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 11..73 e-value: 3.8E-28 score: 109.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 11..59 e-value: 1.2E-11 score: 44.7
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 11..67 score: 20.151976
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 11..69 e-value: 2.37476E-19 score: 75.0007
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 11..68 e-value: 9.4E-22 score: 78.9
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 5..166
None	No IPR available	PANTHER	PTHR31985:SF167	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026	coord: 5..166
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 12..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G010110.1	CmaCh16G010110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity