CmaCh16G010070 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGTGCAGTGGAAGAGGGGTGGCCCTTAGAGAAGAGTATTACCAAGCCTTGAGCAAATTGAAGAAATTCTTTTGACGGAAGAGCAAACTGAAGAGATTCTTCCACAGAAGACGGGGAGGAAACTGTACACATTTGCTTCAGTGCTAATGTGGCTGAAGATTCAAGTGACACTAGTCTTGGTGAGTAATTGGTGAGTAAGAAGTGACTCAACCAAGCGAACCTAGTAAGAAATAATGAGCACCTCAACCACTAAGACAATTAGAAATGATCCAAAAGCCAAGTCTAGAGTATGTCAACACAACTATTGTAGAAGATGAAGTTAATATAAGCTAGAGATATATGAGGATGTATCACAAAACTCGGTTTGGCAGAAAGCGATTGAGGAAGAAATTATAGCCGTGGAGCAAAATCAAACTTGAGAACTAGTGCCAAGATCAAGAGATGTTAAATCTATCTTTTGCAAGTGGATTTACAAAATAAACTGTACCCCGAATGGATCAATTGTGAGATACAAAACTCAGACTGTAGATCCAGGGTTCTCTCAACAATATGAACTAGACTATGATGAAACGTTTAGTCTAGTGGCAAAGATCATTATCGTACAAGTTTCTCCAGTACTTACGGTAAATAAAGATTGAAAATTATGGTAGATGGATATGAATAATGCTTTATTGCATGGAGAGTTAAACAGAGAGTTCTACATGGACTAACTGGAGAAATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGTAAAATCCGAAGAAGCCTCATTTGGATGCGGCTCGACGAACCTTGAGATATGTCAAAGGTACAATCAATTACGATCGTTTATACAAAAGAAGCGAAGACTAGAAGCTAGCTGGATATAGTGATGTCGACTATGCAGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG ATGGCTAAACAAATAGGAGGCATTACATCGAAGGGTGAAGAAGAAGTACTCTACACAAGTGAAAGCCGGAGCAATAATAGGCCGTCTACAAAACGCGGATACAATGGTGACAAAACAAGAAGTCACCAAGGAATTGTACAACTAGGGAGAGCTTATAAGAACGGTAACAATAACTCTCAAGGGAAAAGATTTGAGGGCATTTACTACAATTGCGGGAAGAAGGGCCACATGTCCAAAGATTGTTGGTCTAAGAAAAAATCTGTCGAAAGCAATGTGACATCCTCCAACATGGAGATGGAGGAGGAATGGGATGCAGAGGTACTCTATGCTATAGAAGAAGATGAGCTAGCACTCATGGTGATGATGGGAGACCATATCGATTATGAGAATGATTGGATCATTGATTTAGGATACTCAAACCACATGATTGATGATCAAAGTGGAGACCACGATACCCGAAGATCAATCACTGGGTATGTGTTCAAGCTTGGTTTGAGAACAATTTTTTGGTGTAACAAAAGACAACTAACAATATCATTGTCAACTAGAGAAGCAGAGTATAGAGCAGCAGCTGGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCTAATACTTCATTACAACAATCAATCTGTGATTCGCCTAGCAGAAAATTCGGTGTTTCATGCTAGAACAAAACATGTAGAGGTACACTATCATTTCATTAGAGAGAAAGTCTTGAAGGAACAAATGGAGATGCAGCAGATCAAGACAGATGATCAAGTGACAGACTTGTTTACAAAAGGGCTGAATACTGCTAAACATGAGAGTTTTCGCTGTCAGCTCAACATGGTGCAACGAATGAGGACTAGTGCTGAGGGGAGTCTTAAAATATCATCACTAACCCAATAG MAKQIGGITSKGEEEVLYTSESRSNNRPSTKRGYNGDKTRSHQGIVQLGRAYKNGNNNSQGKRFEGIYYNCGKKGHMSKDCWSKKKSVESNVTSSNMEMEEEWDAEVLYAIEEDELALMVMMGDHIDYENDWIIDLGYSNHMIDDQSGDHDTRRSITGYVFKLGLRTIFWCNKRQLTISLSTREAEYRAAAGAAQENTWLKLLMEDWHQKIEYLILHYNNQSVIRLAENSVFHARTKHVEVHYHFIREKVLKEQMEMQQIKTDDQVTDLFTKGLNTAKHESFRCQLNMVQRMRTSAEGSLKISSLTQ Homology
BLAST of CmaCh16G010070 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 8.2e-22 Identity = 59/138 (42.75%), Postives = 89/138 (64.49%), Query Frame = 0
BLAST of CmaCh16G010070 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 102.4 bits (254), Expect = 9.0e-21 Identity = 61/169 (36.09%), Postives = 98/169 (57.99%), Query Frame = 0
BLAST of CmaCh16G010070 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.8e-16 Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 0
BLAST of CmaCh16G010070 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 2.3e-16 Identity = 48/147 (32.65%), Postives = 77/147 (52.38%), Query Frame = 0
BLAST of CmaCh16G010070 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 2.6e-07 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0
BLAST of CmaCh16G010070 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13 Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 0
BLAST of CmaCh16G010070 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 52.4 bits (124), Expect = 7.6e-07 Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|