CmaCh16G009940 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionBEST Arabidopsis thaliana protein match is: embryo defective 1303 .
LocationCma_Chr16: 7644087 .. 7651014 (-)
RNA-Seq ExpressionCmaCh16G009940
SyntenyCmaCh16G009940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGAGTGGCGAAACAAAGGGAATTTATATTTGACCGCCTCTTCCTGCCTTTATCTCCATGAATTCTCGCCAGGAGCTCGCCGCCATCTCCCTTCAAACGAGGCCTTCTGCTGCCTAACCACCTTCTTCTCTCTCTTGAAAGCTTTTGGCGTTACGGATTTTCGCTACTTTGTAGGGACGAATCGGGTTGGTCATCGGGCCTGTCGTATCTTCAAGGTTCGGTTCCTGTAATTTCTGTTCTGCTTCTTTGTATTGATAGTTTCCCGTTGTTCTACATTGAAAAATTATGTTGTAAGTTCTCGTGGTATAGCCAATTCTTCTCCTGTGCTTCGCATTATTGTTGAATTGGAGAGGTTATTCTTGCTTTTGTGTTGGTATTTTGGAATCGATTGAAGTGCGTTTCTATGTGAATTTAGAGTTATTGCTTGAATGCTAGAATTTCCGTGTGACCTAAGGGTTCTGATTACTTGAAGGCGCTTCTGCTTTTATTTCCGTGTGACCTAAGGGATTTCTTGGTATGGAGAATACTTTAGGGCAAGGAGAGGGGATGAGGGAGCCATCACTATCTCTCTCCCTTTTTCTTCTCCCTCTGAAGTCTTTATCTCCATCTGGACTCCTCGGTGGAAGTGTCATACTCTTTTTGAGGCTTTTTTAGGTGTAAATAATTTATGTACGACGAAGATTATAAAAAAAAAACAATGACAATTTTAAGAAATTAGAGTTTGTGTTAGAAATCGCGTTTTTGGTGTTCATTTGATGTCAAATTAGTTAATATTATAAAAAGAAGTTAAAAGAGATAAAAGGACACCAAGTGAAACTAGACTTCGGTTTGATGTATAGAATATTTAAAAAAAAACCTTTTTGGTCTCGAATAGATTTTGATTGGCTTCAAGTTCAAGATAACTGAATTAGACCAATAAAACAGTGGCATTCTTGATCATCTTTATATTTCTGTTTTAAAGTTCATGAAACCCACGAAGTCAATAGAAACTAGAAAGGCGCATGTTAAGAGTTTACTTGGCATGTATGGGGGTTACCTTGTTATGTAAATTCATAGAAACATTCATATCTTGTGATTTTGAAGAATGTAATGTAAGGAGTATTTAATTTATGTTGGGGTATGTCTTGTTAAGTTAGTTTTTCTCTTTCACTCAATCTGGACTGGACATAAACAAGTTCTTCCCTTTTTTTCTTTAGCTTTGGTTCAATTGTGGAGATGCTTGCCAGTAAGGTGGCCAAATAGTTTTGATTTTTTTACTGAAAATTACTTGAATTTAGGAGAATGTGGATCAAATATACTGTCTCTGACTATCTTTTAGACTTACCTCTTGTGATCTTTTACCATGTTCTTTTAGTTGTTTTCTTTATCAGTAGATGAGTTCCTCGTTCTCTCTTGACATGACACCTCAAAACTGAACTGGTTGATTCGTTCCATTCAACTGGTTCCGTTTGGACTTGAAAAATTAAGGACACATGAATTGGGTTGGTTGGTGGTTCAAAATAAATTATATCAACCAAAGAAAACTGAACCGAACCAATTATAATATAATTATGCAATATAATTCATATAAGAATGTGAAGAATTTTATTTTTTGCAAGATATAATTCTTCTCAAAATACTCTCAATTGAATATTTTAAATTATTAAAAAAAATCGTCAATCAAAAATCTGTTTATCTGTCTTATATTAACAGACCNNNCCCCCCCCCCCCCCCCCCTGTCGTTGTTGCTTTCTCTCCTCCCACCCTTCCAGCCTCCCACAAAATCCTCTTTTGAATCCATTCTAAAATCATCCTCTTAAATCCCTTTTGGTTTCTGCTGTCGCACCATCATTGTTACTGGCCTCCACACTTTGCCTCTAACTATAAGGTAAGTAACCCTTTCTCTCTTCCTTGATCGTTGCCCTTGCTTTTCAAAAGGGAAAATTGATAAATTGATCGTTTAATTCTTTTCAATCTGTTTTGGGCAGAAGCTTTGTTTTTTTATTTAATGGAGCTTTTCTGGTATAGAATGTAGGTCTGGGAGGCTTGTTGTTCGATGAGATTGATCGGTGTCGAATATGAAGTGTTTTGTCTTGGATAAGAAATAGGGTACCTTTATAAAATAAAAACCTCACATAACAACCTAAAAGCCATAATGAGAGGCGTTTCTACACTGTCTAATAAATTAATATACAGAATAAATTCCTAAGGTACTAGAGAATCCAATCCTAGCGAGCACTCAAGGACTGCTCACTTGCAAAATGTGTACTACTTTACAATCACATTTCATTTGAAGCTCATTATGGAATGAGGTGAGTCTCTCTCTCTCTCTCTCTCTCTCTATTGCATTTGAGATCATAACTATTTCAGTTAACAATAGGAGCGAGAACTAATGAGGATAATAGCTTAAGGCTATGGTTTTGGCCTTTGGAAGTTTTGTGATAGTGTAGAACATTCCACCTCATGGTGATGTTGTTAATGTTTGGAAGGCTCTTATTTTGCAGTCCTTTCCGGGTAGGGTTTCCTCTACCCCTCCCCTCCCGAGAATGGGAGGTTTCTGTGACAAGCTAGGTGGTATAGTTTTGTGAGGCCTTTGGCATGAGAGGAACCATATAACATTTAGAGGATTTGAGATGACTTCAGTCATGTTTGGTTCTTTGTAATGTTCCATGTTTCTCTTACACTTCAGTAGCCAAGTCTTTTGTAGTTATCCTTTAGGTCTTATTTCAATTTGAGCTCCTTTTTTCGTGGGATTTGTTTTTGTATGACTTGGTATTCTTTCATTATTTTCTCAAGGGAAGTTCTATTATTCATAGAAAAACAAAAGAGTTTTGGTGATACAAAAAAGGGACTAAAGTGAGTTATACGACAAACAATCATCAATACCATCAACAAGTCAGAATAACTTAACACTGTAAATGCCTTTCTTTTTCTTTTAGGTCAGTGAGGTCTGTGATGTCTGTGAGTATATGGGTCAAGATGATTTAGCATCGTAAGTACCTTTTAGGGATTCTCGTTTCAATCCAGGATTTAAAGATTTGAAACTAGATATTAGGTGCCTGAACAACCTTCATGGCCTTTTTCTCTATATTATATAAAATCACAACAAATAAGAGGGGATAGATCAAATCATCTGAACATATGCCAAAATCAACCTAATGACTAATCAAATAAGATTTACCTACTGTTCATATCTACTGTATTGCTTCTCAAACTCCTCCTTATGTCTGCAGTCGGCCAAATCAGGGCTTCATTGTATTCAATTATCTCCCTTTATTTTCTCCAAAGTATTCGGTTGAGTCACCTTTTTTTAGGGTCCATGCTTGTCAAAGCCACCCTACAGGGTTTCTAGGTTGCTTTTGGAAAGAATTTCCTGTTTTGGAAAAGTATCCCAAAGATCCTCCAGCTCTTACAACAATTTCTGGGTTCGAATTCTAGCCTGCGGCTTCTGACACCAGCTCTAGAGTTTAGGGATTTGATTACTATCTTATACTTTTCATTCATATAGTGGTAATCTTATAAAACAGATCATTATTATCCACTTTTCTCATATAGCTTCTTCTTATTCTTCCTTTTTTTTTTTTGCTGTTACTATTTTTATTTTATAGGAGGCAATTTCATTTATGTTTGAAATTTACAAAACCTTGTTATTTTATGTTCTGTTCGGATAAACTTCCTTAACTGTGCATTGCATAGGGTTCGGATAAACATTTTTTTATTTTTTTTTATTTTTAATGTTGAGTTATGATTTTATTCTTATATTCACATTCTTAATTACATAACATGCAGTCTTTTAGGTTGCAACTTGTAGTAATTAGGAAATTCAATTTATTCTCATTTTATTGGCGCTTTCATCTCAGAAATTCTTGTTTACAGTGTCAGGTTGTCATCTACCCTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGGTACAAGCAACTAATTTTCTTATTGTTTCTTTGATTTGATGCAAGTGGAAATGAATGGATTTAATTATAATAAAAAAAAGACAAGTACAGGAGAAGGGAAGCAGGATATGGCATTTACCTTACCTCAGAAAGGAACACGTAAGAAATAAGAAGCAACCCATATCTAATTTGATTGGAGAAGTAAGTTAATGTTAGCATTCCTACCATTCACTCCAGCATGAGGTACTGTACTGTATAACATCCAAGAAATTGTCAAAAGTTTTAAAGATATCTTTAAGGGATTCCATTGTTCCTTTCAATCTAAAATTAGCCATTTCATAAAAATAAAAATAAAAAATAAAAAATAAAAAATAAAAAATTAATAATTAGCCATAAAACAGCTTTAGAAGGAATTCCATGTAGAAATCGTCCTTTCTTTTCAGTCACCAATGCACAAACTTCTGAAAATCAGGGATCTCATTCTTCAGGAAGCTCTAAGAATGCCAAATTTGACATGATGAAAATTCCACCTTTATTGGACACTCAGTAGAGGAATAGATGGTCTATATTGGGAAAAGTTGACTTTTGTGTGGGCCTCTTCCTAATCAGGTTAGCTATGTTGGTAACTGAGGTTAGGGTTTTTGTTAGTTAGGTAGAAAAAGCAGACTTCCAAGAATATGTCCCCAAATTATCAAAATGCCAAATGAAAAGAGATGTTATATGCTCTCTCATACTAATATCTATCATGGTTTATTAAGTTTGGGAACAAATAATTTAGCTGGTATAGATCCACTCAAGCAATCTGATTGTCGAGATAACATTTCCTTGCAGTGTGTACATATGAATGGTGTATATATATCTCTATATATTCTTGAAAGTAATAGATAACTGTTGTAGAAATAATCGTTCCTGGTACAGCTGTGAAAGGTCACAGCTTTTCACGGTTTTGTGGTCTCAATATTTTGTCAGCTGATGCTGGTTGGGAATTTATTGATGGACCATAACATCTTGCTCATTCTTTGGAATGTATATTTACTTACACTCGGTTGATTGGAGCAGTCGATTTTCATGGCTGCTAATTGTGATAAACTATGATTTATCAAATGCCTCTATCTTCGTAACATAATATATATCCTTTTCTTGTGGTTTTATGTTGTCCTTCATGCTTTAAGTTTTAATATATTTCTTCCCAGACTAAAAAATGGAACTAATTAGCTTATATTATCTTTTGTATTGGAATACCGTTGTAGTTACATTGATTTCTTTTCAGTTGAAAAATATTGGTTTCTTGCTTAAATTAGTGTTATATTACCATTAATTTGAGATTTCTTTGATCTTTAGTTGTAATATTGTCTTTGTAAAATAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGGTAATTTGGTTCTTATTAATTTGTTTGTCTTTTAATGCTTCCTTATTTCAACTGTTCTCTGTTTACTTCAAAGCCCTGCTGGTAGTAATTGTTCTATATCAAAAACATTACTGTACAATCCTAAGCCTTAGATGCCAAGGTAGAGTTTTAAAAGTCTTCCGAATCCGAATTTTTAGTGGGGTGAATTTGTGATAGGTTTAATTAATACCTTGATTTGGGTCTCTATGGCTAATCCCTTTTGTAGTATCAGTTATGTCTTATTCTTTTATGCCTTATTATTTTGGATGAGAGCCCCTTTTGTACTTCCTTGGGAACTGTTTTTTTATATGCCCATATAAGCTTTCAGATTTCTCATTAAAAGCTTGGTTACTTGTAGTAAAAGAGAATGTTTAATGAGAAATAGTTGAAGCCACATTTTTTTTTTTCATTTACCCAATCAATTAGTTTCTGGGTGGTGGATTTTCAAATGGATTTGAGTTTTTTGTTAAATAATCAATAGCAAAGAACAAAATCGAGTTTTAAGCGTAGTGAAAGACTTAAACACAATATTTGTAGGGGTTTATATGTGTGTATATATATATATCTAATGACGCTGTCTCTCTGCAGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGTAACAATCACTTGCAAATTTTATGAATAATAGTAACTTTAAACTTCAAACTTCCTAGCAGCAAGTAGCATATGCACATGTTATCGCCTTGCAACCCGAACATCATGTATTCATCTAGCAGCATGTTGTTTCCCTAAAATTGCTTACATAAGAACATTGTGTTACCTCCCCCAACTCTTTGCATATGCACATGTTATCGCCTAGCATCAAGTAGCATATGCACATGTTCTTATGTATTCTTCTCTCCCTAACACGCACGGGATTGTCCTATGTTATCATAACGTTGCTGTTGCTAAGCCTTATTTTTAGCTATACATTGTGTTACCTAAAACTAAAAATGCAGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAAATATATTTTGATCAAATTTATAAAATGTAGATTCAGAGTTATACTTGGAGACAATCTCAAAATAAACATTTGTTTCTAGTAATGTTAATCCAATTTGATTTCTTTCATCCACTTTGTTGAAGATATTACCAAGTCAATATAGTGATTCTTCCTCTCACCCTCTCTCCCCTTCTATCCCCACTTCGTCCCTACATGCCACAAAGAATGCTACCTTTAAAGCCATCG

mRNA sequence

CGGAGTGGCGAAACAAAGGGAATTTATATTTGACCGCCTCTTCCTGCCTTTATCTCCATGAATTCTCGCCAGGAGCTCGCCGCCATCTCCCTTCAAACGAGGCCTTCTGCTGCCTAACCACCTTCTTCTCTCTCTTGAAAGCTTTTGGCGTTACGGATTTTCGCTACTTTGTAGGGACGAATCGGGTTGGTCATCGGGCCTGTCGTATCTTCAAGTGTCAGGTTGTCATCTACCCTCGAAGATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAAATATATTTTGATCAAATTTATAAAATGTAGATTCAGAGTTATACTTGGAGACAATCTCAAAATAAACATTTGTTTCTAGTAATGTTAATCCAATTTGATTTCTTTCATCCACTTTGTTGAAGATATTACCAAGTCAATATAGTGATTCTTCCTCTCACCCTCTCTCCCCTTCTATCCCCACTTCGTCCCTACATGCCACAAAGAATGCTACCTTTAAAGCCATCG

Coding sequence (CDS)

ATGGAGATGCTTACTACAAATTCTGGTGCCATGCTAACTCTTCTACCCCCAGTGGGTCAGCATTGGGGAAAAATGAAGGTCAAAGACTTCCTTCTTAGAAGGGATAGTGTCCAACTTCAAACTCCTAATGGGAGGAGACAATCTGTGATTGCTAAAGCAGGACCAGTTTTTCTCAAACCAATTCCATCTACTGGGACGAAGGGAGGCTTTCTGTATTCTACTAGAAAGAACAACAACGCTTTCATATGTTTTGCTGCATTGAATGCTAGGTGTGCAGCGGAGCAGACCCAGACTGTTACAAGAGAGGCTCCTACAATCACTGTTCTTCCCGGCAAGGAGAAGTCACCGCAACTGGATGATGGCGATTCTGGATTTCCACCTCGTGATGATGGTGATGGCGGCGGTGGAGGTGGCGGTGGTGGAGGAAACTGGTCTGGTGGATTCTTCTTCTTTGGCTTCCTTGCTTTCCTAGGCTTTTTAAAAGATAAAGAAAGTGAAGGGTCCTATGAGGATGATAGGAGAAGATAA

Protein sequence

MEMLTTNSGAMLTLLPPVGQHWGKMKVKDFLLRRDSVQLQTPNGRRQSVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR
Homology
[Close]
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ44 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 88  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 147
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKTQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 148 -NWSGGFFFFGFLAFLGFLKDKE 165
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: Q0E3V2 (Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=YL1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 83  CFAALNARCAAEQTQTVTRE------APTITVLPGKEKSPQLDDGDSGFPPRDDGDGGGG 142
           C A++   C A QTQT  R+      +P    +  K +SP+LDDG +GFPP   G GGGG
Sbjct: 58  CEASMRITCCANQTQTARRKSFSGPTSPPSGSVKEKVRSPKLDDGGTGFPPFRFGGGGGG 117

Query: 143 GGGGGGNWSGGFFFFGFLAFLGFLKDKE 165
           GGGGG N +GGF  F  +  L +L++ E
Sbjct: 118 GGGGGSNSAGGFILFVIVLLLDYLREFE 145

[Close]
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ42 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.5e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 88  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 147
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 148 -NWSGGFFFFGFLAFLGFLKDKE 165
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match: F1SZ41 (Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RF2 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.5e-08
Identity = 41/83 (49.40%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 88  NARCAAEQTQTVTREAPTITVL----PGKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGG- 147
           + RC A QTQ+  R++ T TV      GK + P+LDDG  GFPP   G GGGGGGGGGG 
Sbjct: 49  SVRCNATQTQSAQRKSSTATVKRSDPKGKIQGPKLDDGSGGFPPFRFGKGGGGGGGGGGG 108

Query: 148 -NWSGGFFFFGFLAFLGFLKDKE 165
            N+ GGF  F  +  L +LK+ E
Sbjct: 109 SNYFGGFLLFTCVLLLDYLKEFE 131

[Close]
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G56200.1 (embryo defective 1303 )

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 58  LKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKS 117
           + P+ + G   G L S RK  +  IC +A+NA+C+  QTQTVTRE+PTIT  P   KEKS
Sbjct: 39  VSPLSAVGLSSG-LGSRRK--SLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKS 98

Query: 118 PQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR 176
           P LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y   RRR
Sbjct: 99  PSLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 154

[Close]
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G56200.2 (embryo defective 1303 )

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 0 

Query: 58  LKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQTQTVTREAPTITVLP--GKEKS 117
           + P+ + G   G L S RK  +  IC +A+NA+C+  QTQTVTRE+PTIT  P   KEKS
Sbjct: 36  VSPLSAVGLSSG-LGSRRK--SLLICHSAINAKCSEGQTQTVTRESPTITQAPVHSKEKS 95

Query: 118 PQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEGSYEDDRRR 176
           P LDDG  GFPPRDDGD GGGGGGGGGNWSGGFFFFGFLAFLG LKDKE E  Y   RRR
Sbjct: 96  PSLDDGGDGFPPRDDGD-GGGGGGGGGNWSGGFFFFGFLAFLGLLKDKEGEEDYRGSRRR 151

[Close]
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.1 (BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 41  TPNGRRQ-----SVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQ 100
           T NG  Q     SV  +  P      PS       +  ++     F C +ALN++C+  Q
Sbjct: 55  TSNGNSQRRYPTSVSMQRQPWSQSKFPSLQDAVQPVVVSKNKRPVFACNSALNSKCSQGQ 114

Query: 101 TQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGF 160
           TQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGF
Sbjct: 115 TQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPRDDG-GGGGGGGGGGSSSGGFFLFGF 174

Query: 161 LAFLGFLKDKESE 167
           L F+G+LKD E E
Sbjct: 175 LLFMGYLKDLEGE 186

[Close]
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 41  TPNGRRQ-----SVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQ 100
           T NG  Q     SV  +  P      PS       +  ++     F C +ALN++C+  Q
Sbjct: 26  TSNGNSQRRYPTSVSMQRQPWSQSKFPSLQDAVQPVVVSKNKRPVFACNSALNSKCSQGQ 85

Query: 101 TQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGF 160
           TQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGF
Sbjct: 86  TQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPRDDG-GGGGGGGGGGSSSGGFFLFGF 145

Query: 161 LAFLGFLKDKESE 167
           L F+G+LKD E E
Sbjct: 146 LLFMGYLKDLEGE 157

[Close]
BLAST of CmaCh16G009940 vs. TAIR 10
Match: AT1G30475.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 142 Blast hits to 142 proteins in 33 species: Archae - 0; Bacteria - 14; Metazoa - 57; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 41  TPNGRRQ-----SVIAKAGPVFLKPIPSTGTKGGFLYSTRKNNNAFICFAALNARCAAEQ 100
           T NG  Q     SV  +  P      PS       +  ++     F C +ALN++C+  Q
Sbjct: 26  TSNGNSQRRYPTSVSMQRQPWSQSKFPSLQDAVQPVVVSKNKRPVFACNSALNSKCSQGQ 85

Query: 101 TQTVTREAPTITVLP--GKEKSPQLDDGDSGFPPRDDGDGGGGGGGGGGNWSGGFFFFGF 160
           TQTVTR++PTIT  P  GK KSP+LDDG +GFPPRDDG GGGGGGGGGG+ SGGFF FGF
Sbjct: 86  TQTVTRQSPTITQAPTHGKVKSPKLDDGGNGFPPRDDG-GGGGGGGGGGSSSGGFFLFGF 145

Query: 161 LAFLGFLKDKESE 167
           L F+G+LKD E E
Sbjct: 146 LLFMGYLKDLEGE 157

The following BLAST results are available for this feature:
BLAST of CmaCh16G009940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F1SZ445.0e-0849.40Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX... [more]
Q0E3V26.5e-0844.32Protein YELLOW LEAF 1, choloroplastic OS=Oryza sativa subsp. japonica OX=39947 G... [more]
F1SZ428.5e-0849.40Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. japonica OX... [more]
F1SZ418.5e-0849.40Protein FERTILITY RESTORER RF2, mitochondrial OS=Oryza sativa subsp. indica OX=3... [more]
BLAST of CmaCh16G009940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G56200.12.3e-3265.83embryo defective 1303 [more]
AT1G56200.22.3e-3265.83embryo defective 1303 [more]
AT1G30475.11.0e-2452.63BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G5620... [more]
AT1G30475.21.0e-2452.63FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G30475.31.0e-2452.63FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..140
NoneNo IPR availablePANTHERPTHR34938:SF1PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIALcoord: 72..174
IPR040299Protein FERTILITY RESTORER RF2-likePANTHERPTHR34938PROTEIN FERTILITY RESTORER RF2, MITOCHONDRIALcoord: 72..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009940.1CmaCh16G009940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009507 chloroplast