Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCTCTTTCCATCTTCATCGGGTATATAATTCTGGTCTCTCCGGTCTTTGGCTCTTCACTTCTTCTGGTCTTCTGGGTTTCTCAAGATACCGATTTCGATACCCCTCGTTTCTCTTTCTCTCTCCCTNTCTTCATTTCTCTGTTGTTTCTCTTTCTCAGATCGCGCGCCATTTCTGTTCTCCAGATTCATCACACTCCAAAAATTGATCCCAAAATCATCCGGATTCGTCTGATATCGGAGAGTTGCAGATCTGGGTTTTGCGCAATTCAGCTGATTCTTCATGGCTTCCACTGGGAATCCAAATCCAAATCCACCGAATCCACCCTTTGATGTCCAGAAATTCTTTAAACCCACCATTTCAAACCCTCCGCCGACCTCCCAAAACCCTACCCTTTTGAATTCATCGCCATTTCCGCCTCCTTCTTCCTCTTACCCTCCTCCCACTGGTCCTTTCTCTTATCCACTTCAGAACGCCCCATTTCATCATCCCTACCATTCTCCTCATCTTCCCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCTAACCTTCACCATCAGCGCTCTCTTTCTTATCCCACGCCGCCGCTTCAGCCTTCTGCGCCTCCGGTCAACGTCGGCGTCCCGCAGAACAATCCGGCGCAGAGCTCTGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTCGAACAACTCCCTCTTCCCCCTGCTCCATTGGGTTCGATGCCGTCTCCTTCTTCGGGCATTCCTGAATCTTCAGCGCCTCCTAATATTCCCATCATGACTACCATTCCCATGATACAGGGGGTTAATCCTGGCATTTCTCCTACCGGGCCGGTTCGAATGCCGAGTAGTAAGCTTCCTAAAGGCCGGCATTTGATCGGTGATTATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCTATTACCAAATATGGTTCAGATCCTCAGCTTGTGCTGGGCCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGGAATATTCGAGTTCTTAATATCAATACAGCGCTAAGATCATTGTTTCGAGGCCATGAAAAGGTTTGGCTTACAATTTTTGTTTCTTTGTTCTTCTAATTTGAATGAATTGCTTCGTTGCTTGCTTGGGGATCTATCATTTTGCTTGTTTTGCATTAATCATTGTTTTACATTCTAATACTTGGAATATTGCAATAGTTACTTTTTAATATTTACGTCGTGAACTAGTAACCCCATTTGATGTATGGAGATTTACCAAGAGCTACGAGAAGGTGCTCCAACTAGAGTTAATATAGGAGGATAAATAGATGCAAAATGGTTTGAGCAAGAGCTCCAAGAGAAGCGGCAGAAGTTATGTCAGAAAAGATTCCTGAAGGTTCCAACTTCCAGATTATTTTGTCTTCATCACTAAACATAGCCTTTTCTCATCATTTCTCGAGGATCTGTTTGCTGTAAAATCCTTGATCTCCTCTTCCATCAAGTTTTGACAATATTAGGCACCAAAAGTTTGTTTTAGGTCCCAATCCTGCCAAATAAATGTGAGTATATCTTCTGTTATAGGTTTATAATAGGGCACTTCCTTGGGAAAGTTCAACTAGAGACCTTGCCACGGTAAAAAAATTGGCCATAAACTAACTCATTAAACTTCTAGGACTTCAAAGTGTTGATAAAAAAATTGCATAAAAGTGTCTCCATCACTTTGTCATCGCTGTGTAGAATTTTTTTCCATTGAAATTGACGCAGGTATAAGAGATATGCTAGGGTAAAGAACATGGGCATGACGTTATCTAATCTTTTTCCCACCAGTGGGGTTCCCTTGCTTGTTAGTTGACAGCTTCAAGAACTTGATTGGCTGTTCTTACCTTCAAACACTTGTGTTATATGATGGAAATTGAAGTCATGGTTCCGTCTAGTGATAACCAGAAAGGTTAGTCCTACATTCTAGGTTGCTTTCTATCCCTAGTCTCTTTTGACCACTTGAAAGGAGCAAACATTGAATACTTCAGAAGCAGCTTGTGCAAAGCTTGACTATACGGTGCCTTGGGGCTGTTATTCGTATGCAAGATACTTTCTCTATGTAATCTGCTAATTTGGGCGCACCCTTATTATGTTTATGGTATCCCATCACTAGCTTCACTTGCCTAAAACAAATCCATTCCACAGATCATAGACTCTCCAGTGTTTTCATTTGGACCTATCCGTAATCCCTCTTCCTCCGAGGAAAAAAAAAAAACCAAAATTTTGGTTCACTTAATGTGAGTGTATCCATTTGAAGTTTTTGTTTATTAGCAGGTTAGAACTCTCCACCTGCTGTAGTTTCTTGGAACTAACTCAAGAAATTATCTCTCTAGCCCTTGATCATTGTTCCTCTCCTAGTCCTAACTCCAACCCTTACTTTGAACTAGTTTATATTACCAATTATTTTTATTTAGCTTCATACTAATGTAGTCTATTCTATAATGTACCCTATCTATGATGAAAACTTCTATCCAACATTCTCTTAGAATCAAATTCCAATGTTGAAGATATTAGGTGGCCTCGATTCCTTGATTTGGCATTTTCTGTAAAATATTGGTTTCTTTTTTTTTTTTTTTTTTTTTTTTAATATCTGTGAGTGTTTGTGTCAGCTTGCTTGCCACATTGGCTATTTTTACACATTTTGTTGGATGGAAATTTGTAGGATATTAAATTATAAGTAGATGTACAATTAATCTACTCTACCTAAGCCCTTTTTATATCTGTCCTCGATTCCATGGTGTTTTTCATATTATTGTTATTATTCTTCTATTTTACACTTGTGTTGCATTCTTATCATTCAACTGGGTTACGGTAAATTGTGCCTGGTAAAATCCTCTTCCTCACTTATCTTCATCCTTCCCTCCCAAATTCTCAATAATGTCTTATTCACGCAGAGGGTCACTGACATGGCATTCTTTGCCGAAGATGTTCATCTTTTGGCTAGGTAATTATACACTGCATCCCAAACTTAATTTTGTATCTGCTTGGATTATTGTTTTATGGGCCTCTTTTACTCTCTTTTTGGAAGGCAGTTCTCCATAATAAAACTAAAATCCTCCCACCTCCCCCCCCCCTGCCCCACCGTTTTAACTGGGTTATGGCATATTTCTTTTATTCAGTGTTGACGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAACTAAGCCACAAATCACTGGGAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGTTCATCCACGAGTTTGCTGGCATTGTCACAAACAGGCAATAATTATTTTAATGCAAACACCCATATTAGCCTTGATTCATAATTAGTTTTCTTTATGGTTTATAATTAATCATCATTGTACAGTTGCTCAACCTCCATATATGAATGTTGTCTGAATTTGTATAGGAAGTTTTGGTTGTTGGATTTGGGAAGTCTGTTTTGAGAATTGACACAACCAAAGTTGGAAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTATCAAATTTTCTCTTGATAAGTTGATTGATGGTGTCCAGCTTGTTGGTAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCTCGATTGGTTTCTGCTTCTATGGATGGAACGGTTAGTACTTATCCTGTTGAAGTTCTGAACCTGTTTATTGGACAAGTTATCTGTGATTTATTCATTTTGCAAATACTTGCTGAAATTGACAAGTATTTTCTCAAAGAACTGAAGAAAATATTGTCCTTTACTTTTATGTTTACCAATTAAGTATTAATTTCCCATGTAGATGTTTTGCAGCATAGTGTTCTGTTTTCATGTAGCATAGTGTTCAGAACATGTATTTTCCATGTAAATATTTTATTTGCACAGTTCTTTTTCCCCCTTTTCTTGTTTCAAATCTTCTGATTTTTATTTGCTATCATGTTTTGGAAATTAATACATTATATTATCTATTTTCTGAAGACAATGGTCATGGATGTTTTCTTTCAGAAAACTGCTTTATGGTTTCTTTCTTTTTTGAATGTGTATGTACATTATAGATCAAAATCTGGGAAGATCGCAAGGCATCACCTTTGCTGGTTTTGAGACCACATGACGGCCAACCAGTTAATGCAGCTACTTTCTTGACTGCTCCTAATCGACCAGATCACATTATACTCATAACAGCTGTAAGTAATACAAGAACCTCTTTTTTCTTCTTTCAATTTGGTTGAATGATTGTCCGTGCCTGCACTAATTCTAGCTGGCTAAGCATTTTCTCTCATTTAAAACTCTTGATAGGGGCCTCTAAATCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCCGAATCATGGAAATGCACCCAGACCCTGGAACTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCATTATCTCCAGCTGGCCTTCTTTTGCTTGCTAATGCTAAGAAGAATGCTATATATGCAATTCACTTAGATTATGGTCTTAATCCAGCCTCGACACGGATGGATTATATAGCAGAGTTTACTGTCACGATGCCGATTTTAAGTTTTACTGGAACGAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTCTATTGTGTACAAACACAAGCAATACAGCAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATGTGGTGTTAGAAAAGGCAGATTCTAATGTTTCACAAGATTCTGCTGGGGTTGAAGGACTGGCTGCCTTGTTTCCGTCTGGGAGCAAGCCAACTGACACACCCTTCACTAGTTCTACACCCAGGGGTTCAGTGCTAGTCAATGGCTCTGAAAGTGCTACTGCAGAAAGATATCCTGCAAGCACCACTTCTCAGGATGCCGCATCCATTGCAAATACGGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTACTGCATCACCTCCTATTCCTTTGAGCCCACGCTTGTCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTTCCTTTGAGCCTATTACTGCAGTTAGTGATCATGCTGGTGACCGACGTGGTAATGACTTTTCAGTCAATCGACAAATGGATGCCATTCACACAAATTTGTCGGAAGTGTCTTCCCTGGATGATGAGTCCAGAATCATCGAGGAGAAAATTGGACGGGAAGATCTGTCTAACGTCCTAAATCCTCCGATTGTGTTTAAGCATCCAACTCATCTTATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACAACGAATGTCACTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGACGTAGTGGTTAACAATGACGTTGAAGATACAGAGCTGGAGGTTAAAGAGGTAGAAATGAAGTCTCCTCAGAATGGTGAATATGGTCGTAGAGGTGAGCCTCAAAACCTTTCTCCGGAAAACAAGGAAAAAATTTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCTCGAGAGTGTAGTACACTATCATCTGAAACTTATATCATTGAGGAATCTCCACAAGTTGATGCTAATACAATAAACACAGAGGAAGACTCCCAAACTGGTGAGGGTGATAGAACATCTGCCAAAGATGTGTCGGAAAAGGTTTCAGAATCATCTATATCAACAACTCTTCAAATTCCAACTCCTAATACAAAGGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTTAGGCTTGGTTTCCCAATCTCCCAGTGCTTTCAATTCTAATGAATCTTCCACTGAACCTTGCGGTAGTTCAAGCCTTCCTCCACCTGAAGCTGCTTTTCCTCCTTTACTGGCCATTCAAGATACGTTGAATCAGGTTAGGATTAGTAGATCTTTTAGCACAGAGTAGTCAATATCCATTTTTCTTCCATATCTAGGAAGGAAAATATTTAATTCTAATATGGACTTAATTTTAGAAATTTCATGATCCATGCCGAGTGAGTAATTCCATTATGGCCATTTTTTCACAATTTGAGTTCGTTGCCTGAGTTATTGTACTCTAGATGGTCCTTTGGCCTGTCTAATTGTATTGGTTAATAATTTCAAATACTTTTGTATAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGACGACGCTTGCAGTTCCAGTTACTAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAAAAGGCCTTGAAAGCGAATGCTGATGCATTATTGGCCCGGATTCAGGAAGAGAGTGCTAAAAATGAGAAATTATTACGTGATAATACTCAAAAGATAACTAGTCTTGTTGCAAACTTTGTCAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTCTGAAGAAGGAAATGTCAACCATAGGACCTGCTGTGGCTCGCACAATAACACCAGCTATTGAGAAAACAATTTCTTCTGCCATCACTGATTCCTTCCAGGTTTGAATTTATTCGCATACAGACTCTTCTCTTTTTCGTTCTCATCATGGGACCTTATTCATGGCTTGTGTGATGTAGAGAGGAGTAGGCGACAAGGCAGTAAGTCAACTAGAGAAAGCTGTCAACTCAAAGCTTGAAGCAACTGTTGCTAGGCAAATCCAAGCACAGTTTCAAACCTCCGGCAAGCAAGCTCTTCAGGTTTTGTTAATATTTAATAAGCCATCATCTCTATAATTCATTGATAATATTTCTTTGCAGCTCTTGGTTGTTGAGAATTTTGGTTAGAATAATAATCTTCTTATGCAGGATGCACTAAAATCTAGTTTTGAAGCATCTGTAATTCCTGCCTTCGAAATGTCGTGCAAAGCCATGTTTGAGCAAGTAGATTCTACCTTCCAGAAAGGACTGGTTGAACACTCAGCTGCAGCTCAGCAGCACTTCGACTCCTCACATTCTTCATTGGCACTTGCTTTGAGGGTACAATTGCTGAGCTGACATTCTTGATAGAATATAATTTACTCCCAGTTATAATCCCGTGTTTCACTTTTTTATTATGGTGAAGCTTATCATTCGTCTTACGGCCTTATGAGTAATGTGCTAATCAAGTTATGACATGATGTTTTTAAAACTTTGGAGCAGTATGGGAAATGGTTATCTGTCTATTATGGTTATGATCTGTAAAATTAATTGGTCTCTAAGGATGGGTGGACTTTATCCATCTGCTCTGCATGCAAAAAGGATCGGTTCTAGCTATAATTCATAGATAAAGCCTGTTTTGTAGGTCCATGCTGGACATAAACGAAGTCACATTTTGGATTTTATGTTAGATAAGTCCACACAACACTTGACATTTTCTTTGCATATCTGGATGGTGGATTTATTTGAAGTTCCTTGGATTTTCATGTATCTGGTTCAACCCAAGTTGAATTGTTAGGTACATTTGAAGGTTGAAGACGATGATATTTGATTAGCATGATTTGGCACCTTCTACAATCACCTTATTTTTATTAATTATTGTTTGTTTGCTGCTTTTTCCACCCGTGAACTAATTTAAGCATCGAATACAGGATGCAATAAATTCAGCATCAACAATGGCACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCAACTGCTGGAGCAAATGCTAGTTCAATGAATCCTTTGGTTACCCAACTAAGCAATGGACCATTGGGTGCTCTCCATGAGAAGGTTTACTCTTTTTACTTTTCTTCCTTGTATTTCACCTACTGGCCTGGTCTCATGTATTCTCAACGCATGCACTAGGTTGAGGTTCCTTTGGATCCTACCAAAGAACTGTCGAGAATGTTATCTGAAAGGAAATATGAGGAAGCTTTCACCACTGCTTTACAGAGAAGTGATGTGAATATTGTCTCTTGGTTATGTTCACAGGTAATGTATGGAGTGACTGATTTTTGCATGCTTATGTTTTTAGGTTCGTGCGATGTCACCTTGTGGTTGTTTTTTCAATATTTCTTGTGTATTCCTTCTTCTAGAATCCTCTTCAAAGATTTGTTTTTCTTCCTTTGTTACCGTCATTACCATGTTGAATGCCTTCTTTCGATTACGAATGTTTGTTCTAGAAAGTATGGTCAGTTTTAGGACTGTATAGGCCATTACAAGCTTAACGAATGATGGATCCTTTTTCTGGCTATCCCATAGTTAGTGGTCTTGCATCTGTTTCTTCACTAATTTTGATCATCTTGCTATGAATGTAAACCGCAGTGGGTAAATACTGATTCTGAGCACTTCAACCACTAAACTAGGAAGATATATTGTGTTGTTTGGCAGGTTGACCTTAGGGCCATTCTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCACTTCTGCAACAATTAGCCTGTGATATCAACAAGGATAGATCCCGGAAAATTGGATGGATGACAGATGTGGCTGCAGCCGTTAATCCCACAGATCCAATGATAGCAATGCACGTACGACCCATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGACCTTGTCATCGATCTCTCCAGTTGAGCTCACTGGCATTCGTATTATAATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGATTCTTCCCTCTCTTTTTGGTATGTAATTTTGTTCTGTGGCACTTCAATACTCTAATGTGCAGATATAGAGCATGGAGAATAGATACACATCTCCTCTTTCATGTTTGTTTCTGTAAAAGGCACCGAAACCGTGTAGTAGATCCATTGTCGAATCTGTTGTGAAGTAGGCGTAGCATAGGCTCGCTCACATTTTGTTTCTCTTCGTTTCATTTCGTTTTTACGGGTGATTTTCTGTTGTCGTGCTAGAGTAGAGATGTGGCAGATGAGAAAAGCTGTTGGAATATGTTGCATTTTCCTTCTCTTCATGATTCCCACAAAGGTTGTGGGAAAGAGATTTTGTAGGTGGTTGGAACTAAAAAAGAATAGAAGAGTTCCACCTCCCTTATTTTTTGTCCAAATTTTATAACTTTCAAAAACCTAATCTTTCTACTACTTTATCCTTTTTGGTTTTGTGTCAAATATTTCTTGGCCTTGTGGTCACTGTTCAAGGTTATAATTGTCATTCCCTATCGTTGCCGCACCTTCCGTATGGAGACGGGTCAGTAGACATGAGATACTCGAATAAAAGAGGAGCAATTGAG
mRNA sequence
ATTTTCTCTTTCCATCTTCATCGGGTATATAATTCTGGTCTCTCCGGTCTTTGGCTCTTCACTTCTTCTGGTCTTCTGGGTTTCTCAAGATACCGATTTCGATACCCCTCGTTTCTCTTTCTCTCTCCCTNTCTTCATTTCTCTGTTGTTTCTCTTTCTCAGATCGCGCGCCATTTCTGTTCTCCAGATTCATCACACTCCAAAAATTGATCCCAAAATCATCCGGATTCGTCTGATATCGGAGAGTTGCAGATCTGGGTTTTGCGCAATTCAGCTGATTCTTCATGGCTTCCACTGGGAATCCAAATCCAAATCCACCGAATCCACCCTTTGATGTCCAGAAATTCTTTAAACCCACCATTTCAAACCCTCCGCCGACCTCCCAAAACCCTACCCTTTTGAATTCATCGCCATTTCCGCCTCCTTCTTCCTCTTACCCTCCTCCCACTGGTCCTTTCTCTTATCCACTTCAGAACGCCCCATTTCATCATCCCTACCATTCTCCTCATCTTCCCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCTAACCTTCACCATCAGCGCTCTCTTTCTTATCCCACGCCGCCGCTTCAGCCTTCTGCGCCTCCGGTCAACGTCGGCGTCCCGCAGAACAATCCGGCGCAGAGCTCTGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTCGAACAACTCCCTCTTCCCCCTGCTCCATTGGGTTCGATGCCGTCTCCTTCTTCGGGCATTCCTGAATCTTCAGCGCCTCCTAATATTCCCATCATGACTACCATTCCCATGATACAGGGGGTTAATCCTGGCATTTCTCCTACCGGGCCGGTTCGAATGCCGAGTAGTAAGCTTCCTAAAGGCCGGCATTTGATCGGTGATTATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCTATTACCAAATATGGTTCAGATCCTCAGCTTGTGCTGGGCCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGGAATATTCGAGTTCTTAATATCAATACAGCGCTAAGATCATTGTTTCGAGGCCATGAAAAGAGGGTCACTGACATGGCATTCTTTGCCGAAGATGTTCATCTTTTGGCTAGTGTTGACGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAACTAAGCCACAAATCACTGGGAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGTTCATCCACGAGTTTGCTGGCATTGTCACAAACAGGAAGTTTTGGTTGTTGGATTTGGGAAGTCTGTTTTGAGAATTGACACAACCAAAGTTGGAAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTATCAAATTTTCTCTTGATAAGTTGATTGATGGTGTCCAGCTTGTTGGTAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCTCGATTGGTTTCTGCTTCTATGGATGGAACGATCAAAATCTGGGAAGATCGCAAGGCATCACCTTTGCTGGTTTTGAGACCACATGACGGCCAACCAGTTAATGCAGCTACTTTCTTGACTGCTCCTAATCGACCAGATCACATTATACTCATAACAGCTGGGCCTCTAAATCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCCGAATCATGGAAATGCACCCAGACCCTGGAACTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCATTATCTCCAGCTGGCCTTCTTTTGCTTGCTAATGCTAAGAAGAATGCTATATATGCAATTCACTTAGATTATGGTCTTAATCCAGCCTCGACACGGATGGATTATATAGCAGAGTTTACTGTCACGATGCCGATTTTAAGTTTTACTGGAACGAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTCTATTGTGTACAAACACAAGCAATACAGCAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATGTGGTGTTAGAAAAGGCAGATTCTAATGTTTCACAAGATTCTGCTGGGGTTGAAGGACTGGCTGCCTTGTTTCCGTCTGGGAGCAAGCCAACTGACACACCCTTCACTAGTTCTACACCCAGGGGTTCAGTGCTAGTCAATGGCTCTGAAAGTGCTACTGCAGAAAGATATCCTGCAAGCACCACTTCTCAGGATGCCGCATCCATTGCAAATACGGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTACTGCATCACCTCCTATTCCTTTGAGCCCACGCTTGTCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTTCCTTTGAGCCTATTACTGCAGTTAGTGATCATGCTGGTGACCGACGTGGTAATGACTTTTCAGTCAATCGACAAATGGATGCCATTCACACAAATTTGTCGGAAGTGTCTTCCCTGGATGATGAGTCCAGAATCATCGAGGAGAAAATTGGACGGGAAGATCTGTCTAACGTCCTAAATCCTCCGATTGTGTTTAAGCATCCAACTCATCTTATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACAACGAATGTCACTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGACGTAGTGGTTAACAATGACGTTGAAGATACAGAGCTGGAGGTTAAAGAGGTAGAAATGAAGTCTCCTCAGAATGGTGAATATGGTCGTAGAGGTGAGCCTCAAAACCTTTCTCCGGAAAACAAGGAAAAAATTTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCTCGAGAGTGTAGTACACTATCATCTGAAACTTATATCATTGAGGAATCTCCACAAGTTGATGCTAATACAATAAACACAGAGGAAGACTCCCAAACTGGTGAGGGTGATAGAACATCTGCCAAAGATGTGTCGGAAAAGGTTTCAGAATCATCTATATCAACAACTCTTCAAATTCCAACTCCTAATACAAAGGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTTAGGCTTGGTTTCCCAATCTCCCAGTGCTTTCAATTCTAATGAATCTTCCACTGAACCTTGCGGTAGTTCAAGCCTTCCTCCACCTGAAGCTGCTTTTCCTCCTTTACTGGCCATTCAAGATACGTTGAATCAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGACGACGCTTGCAGTTCCAGTTACTAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAAAAGGCCTTGAAAGCGAATGCTGATGCATTATTGGCCCGGATTCAGGAAGAGAGTGCTAAAAATGAGAAATTATTACGTGATAATACTCAAAAGATAACTAGTCTTGTTGCAAACTTTGTCAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTCTGAAGAAGGAAATGTCAACCATAGGACCTGCTGTGGCTCGCACAATAACACCAGCTATTGAGAAAACAATTTCTTCTGCCATCACTGATTCCTTCCAGAGAGGAGTAGGCGACAAGGCAGTAAGTCAACTAGAGAAAGCTGTCAACTCAAAGCTTGAAGCAACTGTTGCTAGGCAAATCCAAGCACAGTTTCAAACCTCCGGCAAGCAAGCTCTTCAGGATGCACTAAAATCTAGTTTTGAAGCATCTGTAATTCCTGCCTTCGAAATGTCGTGCAAAGCCATGTTTGAGCAAGTAGATTCTACCTTCCAGAAAGGACTGGTTGAACACTCAGCTGCAGCTCAGCAGCACTTCGACTCCTCACATTCTTCATTGGCACTTGCTTTGAGGGATGCAATAAATTCAGCATCAACAATGGCACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCAACTGCTGGAGCAAATGCTAGTTCAATGAATCCTTTGGTTACCCAACTAAGCAATGGACCATTGGGTGCTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCTACCAAAGAACTGTCGAGAATGTTATCTGAAAGGAAATATGAGGAAGCTTTCACCACTGCTTTACAGAGAAGTGATGTGAATATTGTCTCTTGGTTATGTTCACAGGTTGACCTTAGGGCCATTCTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCACTTCTGCAACAATTAGCCTGTGATATCAACAAGGATAGATCCCGGAAAATTGGATGGATGACAGATGTGGCTGCAGCCGTTAATCCCACAGATCCAATGATAGCAATGCACGTACGACCCATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGACCTTGTCATCGATCTCTCCAGTTGAGCTCACTGGCATTCGTATTATAATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGATTCTTCCCTCTCTTTTTGGTATGTAATTTTGTTCTGTGGCACTTCAATACTCTAATGTGCAGATATAGAGCATGGAGAATAGATACACATCTCCTCTTTCATGTTTGTTTCTGTAAAAGGCACCGAAACCGTGTAGTAGATCCATTGTCGAATCTGTTGTGAAGTAGGCGTAGCATAGGCTCGCTCACATTTTGTTTCTCTTCGTTTCATTTCGTTTTTACGGGTGATTTTCTGTTGTCGTGCTAGAGTAGAGATGTGGCAGATGAGAAAAGCTGTTGGAATATGTTGCATTTTCCTTCTCTTCATGATTCCCACAAAGGTTGTGGGAAAGAGATTTTGTAGGTGGTTGGAACTAAAAAAGAATAGAAGAGTTCCACCTCCCTTATTTTTTGTCCAAATTTTATAACTTTCAAAAACCTAATCTTTCTACTACTTTATCCTTTTTGGTTTTGTGTCAAATATTTCTTGGCCTTGTGGTCACTGTTCAAGGTTATAATTGTCATTCCCTATCGTTGCCGCACCTTCCGTATGGAGACGGGTCAGTAGACATGAGATACTCGAATAAAAGAGGAGCAATTGAG
Coding sequence (CDS)
ATGGCTTCCACTGGGAATCCAAATCCAAATCCACCGAATCCACCCTTTGATGTCCAGAAATTCTTTAAACCCACCATTTCAAACCCTCCGCCGACCTCCCAAAACCCTACCCTTTTGAATTCATCGCCATTTCCGCCTCCTTCTTCCTCTTACCCTCCTCCCACTGGTCCTTTCTCTTATCCACTTCAGAACGCCCCATTTCATCATCCCTACCATTCTCCTCATCTTCCCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCTAACCTTCACCATCAGCGCTCTCTTTCTTATCCCACGCCGCCGCTTCAGCCTTCTGCGCCTCCGGTCAACGTCGGCGTCCCGCAGAACAATCCGGCGCAGAGCTCTGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTCGAACAACTCCCTCTTCCCCCTGCTCCATTGGGTTCGATGCCGTCTCCTTCTTCGGGCATTCCTGAATCTTCAGCGCCTCCTAATATTCCCATCATGACTACCATTCCCATGATACAGGGGGTTAATCCTGGCATTTCTCCTACCGGGCCGGTTCGAATGCCGAGTAGTAAGCTTCCTAAAGGCCGGCATTTGATCGGTGATTATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCTATTACCAAATATGGTTCAGATCCTCAGCTTGTGCTGGGCCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGGAATATTCGAGTTCTTAATATCAATACAGCGCTAAGATCATTGTTTCGAGGCCATGAAAAGAGGGTCACTGACATGGCATTCTTTGCCGAAGATGTTCATCTTTTGGCTAGTGTTGACGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAACTAAGCCACAAATCACTGGGAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGTTCATCCACGAGTTTGCTGGCATTGTCACAAACAGGAAGTTTTGGTTGTTGGATTTGGGAAGTCTGTTTTGAGAATTGACACAACCAAAGTTGGAAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTATCAAATTTTCTCTTGATAAGTTGATTGATGGTGTCCAGCTTGTTGGTAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCTCGATTGGTTTCTGCTTCTATGGATGGAACGATCAAAATCTGGGAAGATCGCAAGGCATCACCTTTGCTGGTTTTGAGACCACATGACGGCCAACCAGTTAATGCAGCTACTTTCTTGACTGCTCCTAATCGACCAGATCACATTATACTCATAACAGCTGGGCCTCTAAATCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCCGAATCATGGAAATGCACCCAGACCCTGGAACTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCATTATCTCCAGCTGGCCTTCTTTTGCTTGCTAATGCTAAGAAGAATGCTATATATGCAATTCACTTAGATTATGGTCTTAATCCAGCCTCGACACGGATGGATTATATAGCAGAGTTTACTGTCACGATGCCGATTTTAAGTTTTACTGGAACGAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTCTATTGTGTACAAACACAAGCAATACAGCAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATGTGGTGTTAGAAAAGGCAGATTCTAATGTTTCACAAGATTCTGCTGGGGTTGAAGGACTGGCTGCCTTGTTTCCGTCTGGGAGCAAGCCAACTGACACACCCTTCACTAGTTCTACACCCAGGGGTTCAGTGCTAGTCAATGGCTCTGAAAGTGCTACTGCAGAAAGATATCCTGCAAGCACCACTTCTCAGGATGCCGCATCCATTGCAAATACGGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTACTGCATCACCTCCTATTCCTTTGAGCCCACGCTTGTCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTTCCTTTGAGCCTATTACTGCAGTTAGTGATCATGCTGGTGACCGACGTGGTAATGACTTTTCAGTCAATCGACAAATGGATGCCATTCACACAAATTTGTCGGAAGTGTCTTCCCTGGATGATGAGTCCAGAATCATCGAGGAGAAAATTGGACGGGAAGATCTGTCTAACGTCCTAAATCCTCCGATTGTGTTTAAGCATCCAACTCATCTTATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACAACGAATGTCACTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGACGTAGTGGTTAACAATGACGTTGAAGATACAGAGCTGGAGGTTAAAGAGGTAGAAATGAAGTCTCCTCAGAATGGTGAATATGGTCGTAGAGGTGAGCCTCAAAACCTTTCTCCGGAAAACAAGGAAAAAATTTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCTCGAGAGTGTAGTACACTATCATCTGAAACTTATATCATTGAGGAATCTCCACAAGTTGATGCTAATACAATAAACACAGAGGAAGACTCCCAAACTGGTGAGGGTGATAGAACATCTGCCAAAGATGTGTCGGAAAAGGTTTCAGAATCATCTATATCAACAACTCTTCAAATTCCAACTCCTAATACAAAGGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTTAGGCTTGGTTTCCCAATCTCCCAGTGCTTTCAATTCTAATGAATCTTCCACTGAACCTTGCGGTAGTTCAAGCCTTCCTCCACCTGAAGCTGCTTTTCCTCCTTTACTGGCCATTCAAGATACGTTGAATCAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGACGACGCTTGCAGTTCCAGTTACTAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAAAAGGCCTTGAAAGCGAATGCTGATGCATTATTGGCCCGGATTCAGGAAGAGAGTGCTAAAAATGAGAAATTATTACGTGATAATACTCAAAAGATAACTAGTCTTGTTGCAAACTTTGTCAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTCTGAAGAAGGAAATGTCAACCATAGGACCTGCTGTGGCTCGCACAATAACACCAGCTATTGAGAAAACAATTTCTTCTGCCATCACTGATTCCTTCCAGAGAGGAGTAGGCGACAAGGCAGTAAGTCAACTAGAGAAAGCTGTCAACTCAAAGCTTGAAGCAACTGTTGCTAGGCAAATCCAAGCACAGTTTCAAACCTCCGGCAAGCAAGCTCTTCAGGATGCACTAAAATCTAGTTTTGAAGCATCTGTAATTCCTGCCTTCGAAATGTCGTGCAAAGCCATGTTTGAGCAAGTAGATTCTACCTTCCAGAAAGGACTGGTTGAACACTCAGCTGCAGCTCAGCAGCACTTCGACTCCTCACATTCTTCATTGGCACTTGCTTTGAGGGATGCAATAAATTCAGCATCAACAATGGCACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCAACTGCTGGAGCAAATGCTAGTTCAATGAATCCTTTGGTTACCCAACTAAGCAATGGACCATTGGGTGCTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCTACCAAAGAACTGTCGAGAATGTTATCTGAAAGGAAATATGAGGAAGCTTTCACCACTGCTTTACAGAGAAGTGATGTGAATATTGTCTCTTGGTTATGTTCACAGGTTGACCTTAGGGCCATTCTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCACTTCTGCAACAATTAGCCTGTGATATCAACAAGGATAGATCCCGGAAAATTGGATGGATGACAGATGTGGCTGCAGCCGTTAATCCCACAGATCCAATGATAGCAATGCACGTACGACCCATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGACCTTGTCATCGATCTCTCCAGTTGAGCTCACTGGCATTCGTATTATAATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGA
Protein sequence
MASTGNPNPNPPNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHSPHLPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSAPPVNVGVPQNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPNIPIMTTIPMIQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGSESATAERYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNLSGFRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIGREDLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTELEVKEVEMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETYIIEESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNSQALGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITSLVANFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKAVSQLEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASSMNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSWLCSQVDLRAILANPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIAMHVRPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK
Homology
BLAST of CmaCh16G009740 vs. ExPASy Swiss-Prot
Match:
Q9LTT8 (Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1)
HSP 1 Score: 1452.2 bits (3758), Expect = 0.0e+00
Identity = 817/1423 (57.41%), Postives = 1022/1423 (71.82%), Query Frame = 0
Query: 2 ASTGNPNPNPPNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYP 61
+S GN NP+ PPFD+ FKP +S+P+PPP++SYPPPTGPF +
Sbjct: 3 SSPGNTNPH-NTPPFDLGILFKP---------------SSNPYPPPAASYPPPTGPFLHN 62
Query: 62 LQNAPFHHPYHSPHLPNQVPYSQDQFS------NLHHQRSLSYPTPPLQPSAPPVNVGVP 121
+ + P P+ V Q S NLH QR+LSYPTPPL +P N
Sbjct: 63 QYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSN---- 122
Query: 122 QNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPN--IPIMTTI 181
+NP G I+A++ + ++G P ++ P+ +P++
Sbjct: 123 -HNP----GTHILALLN--------------------NTNNGAPVANQEPSHQLPVVNHN 182
Query: 182 PMIQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTPITKYGS 241
+ + G +GP+R+PS KLPKGR LIG++ VYDV+VRLQGEIQPQLEVTPITKYGS
Sbjct: 183 EIARSFPGG---SGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGS 242
Query: 242 DPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLA 301
DPQLV+GRQIAVNK YICYGLK GNIRVLNINTALRSLFRGH +RVTDMAFFAEDV +LA
Sbjct: 243 DPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLA 302
Query: 302 SVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVG 361
SV + G+V+VWKISEG + E +PQITGK+V++L + GE + HPRVCWHCHKQE+LVV
Sbjct: 303 SVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQIL-GEEDTKHPRVCWHCHKQEILVVS 362
Query: 362 FGKSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLV 421
GK VLRIDTTKVG+GE FSAEAP++ LDKLIDGVQ+VGKHDGEVT+LSMCQWMT+RLV
Sbjct: 363 IGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLV 422
Query: 422 SASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIW 481
S+S+DGTIKIW+DRKA PL+VLRPHDG PV++ATF+T+P RPDHIILIT GPLNRE+KIW
Sbjct: 423 SSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIW 482
Query: 482 SSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAI 541
SA EEGWLLP+DAESW+CTQTL+LKSS E + EEAFFNQ++ALS AGLLLLANAK+NA+
Sbjct: 483 VSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNAL 542
Query: 542 YAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYAL 601
YA+HLDYG +P TRMDY++EFTVTMPILSF GT++ + IV+VYCVQT AIQQY L
Sbjct: 543 YAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEE--PIVKVYCVQTLAIQQYTL 602
Query: 602 DLSQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNG 661
DL CLPPP++N+ LEK+DS+VS+++ VEG++ PSG KPTD P S P+ S++VN
Sbjct: 603 DLCLCLPPPIENMGLEKSDSSVSREANLVEGMSE--PSGLKPTDLPSVDSVPKPSIIVNR 662
Query: 662 SESATAERYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNLSG 721
SESA +P++ + A N E K + L S P +PLSPRLS LSG
Sbjct: 663 SESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLSSKLSG 722
Query: 722 FRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKI-GRE 781
+ +PV + EP+ + G D+SV+RQMDA+ +VSS+++ SR + + +
Sbjct: 723 YHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSNVTPDD 782
Query: 782 DLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTE 841
D+S + +P FKHPTHL+TPSEILM VSS+E + TE + + + NIQD VNND DTE
Sbjct: 783 DVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQD--VNNDPRDTE 842
Query: 842 LEVKEV-EMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETYII 901
+EVKE+ E +S QNGE E +N + EN+EK+FCSQ S+L E+AR+C + T+I
Sbjct: 843 VEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPSTEGTFIP 902
Query: 902 EESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNS 961
ES G A D S S P KGKK K KNS
Sbjct: 903 GES---------------KAYGQPIKAGDESGVDSRGG-------PAKLLKGKKQKAKNS 962
Query: 962 QALGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQ 1021
Q GL S S + N +S E S S P + P LLA+Q+T+NQ+M++QKEMQ+Q+
Sbjct: 963 QGPGLSSTSSNVANLADSFNEQSQSLSHPMTD-LLPQLLAMQETMNQVMASQKEMQRQLS 1022
Query: 1022 TTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITSLVA 1081
P+ KE KRLE ALGR +EK+ K+NADAL ARIQEE+ KNEK LRD+ Q+I +
Sbjct: 1023 NAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIVNATT 1082
Query: 1082 NFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKAVSQLEK 1141
NF++K+L A EK +KKE++ IGPA+AR++ P IEKT+SSAIT+SFQRG+GDKAV+QL+K
Sbjct: 1083 NFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDK 1142
Query: 1142 AVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKG 1201
+VN KLEATVARQIQAQFQTSGKQALQ+ L+SS E+SVIP+FE +CKAMF+Q+DS FQKG
Sbjct: 1143 SVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSAFQKG 1202
Query: 1202 LVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASS 1261
+ EH+ AAQQ FDS HS LA L+++I SAS++AQ+LS ELAE QR L+ALA AGAN+
Sbjct: 1203 IAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGG 1262
Query: 1262 MNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSWLCS 1321
N LVTQLS GPLGAL EKVE P+DPT ELSR++SERKYEE+FT+ALQRSDV+IVSWLCS
Sbjct: 1263 SNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCS 1322
Query: 1322 QVDLRAILA-NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIAMHV 1381
QVDLR +LA NPL LSQGVLLSLLQQLACDI+KD SRK+ WMTDV AA+NP+D MIA+H
Sbjct: 1323 QVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHA 1344
Query: 1382 RPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK 1414
RPIFEQVYQIL+H R +++ IR+IMHV+NSML+ CK
Sbjct: 1383 RPIFEQVYQILHHHRNAPG---SDVSAIRLIMHVINSMLMGCK 1344
BLAST of CmaCh16G009740 vs. ExPASy Swiss-Prot
Match:
Q9LTT9 (Varicose-related protein OS=Arabidopsis thaliana OX=3702 GN=VCR PE=2 SV=1)
HSP 1 Score: 1375.5 bits (3559), Expect = 0.0e+00
Identity = 791/1426 (55.47%), Postives = 994/1426 (69.71%), Query Frame = 0
Query: 2 ASTGNPNPNPPNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYP 61
+S GN NP+ P PPFD+ FKP+ SNP YPPPTGPF
Sbjct: 3 SSPGNTNPHNP-PPFDLGTIFKPS-SNP---------------------YPPPTGPFLNN 62
Query: 62 LQNAPFHHPYHSPHLPNQVPYSQDQFS------NLHHQRSLSYPTPPLQPSAPPVNVGVP 121
N + P P+ V +Q S NL QR+LSYPTPPL P +P VN
Sbjct: 63 QYNQQLYAPPGIAAQPSPVNQTQQDVSSSSSATNLQPQRTLSYPTPPLNPQSPRVN---- 122
Query: 122 QNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPNIPIMTTIPM 181
+NP G I+A++ G+ Q PS + I +
Sbjct: 123 -HNP----GTHILALLNNGGAVANQ----------EPSHHNEIARAF------------- 182
Query: 182 IQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTPITKYGSDP 241
PG S GP+ +PS K+PKGR L+G++ VYDV+VRLQGEIQPQLEVTPITKYGSDP
Sbjct: 183 -----PGGS--GPIHVPSGKMPKGRRLVGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDP 242
Query: 242 QLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASV 301
QLVLGRQIAVNK YICYGLK G+IRVLNINTALRSLFRGH +RVTDMAFFAEDVHLLASV
Sbjct: 243 QLVLGRQIAVNKVYICYGLKGGSIRVLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASV 302
Query: 302 DVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFG 361
+ G+V+VWKISEG + + + QITGK+V++L + GE + HPRVCWHCHKQE+LVV G
Sbjct: 303 SLDGKVFVWKISEGSEGDEQSQITGKIVVALQIL-GEEDTKHPRVCWHCHKQEILVVSIG 362
Query: 362 KSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSA 421
K VLRIDTTKVG+GE FSAEAP++ LDKLIDGVQ+VGKHDGEVT+LSMCQWMT+RLVS+
Sbjct: 363 KHVLRIDTTKVGRGEVFSAEAPLQCHLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSS 422
Query: 422 SMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSS 481
S+DGT+KIW+DRK PL+VLRPHDG PVN+A F+T+P RPDHIILIT GPLNRE+KIW S
Sbjct: 423 SVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPDHIILITGGPLNREIKIWVS 482
Query: 482 ASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYA 541
A EEGWLLP+D ESW+CTQTL+LKSS E Q E+AFFNQ++ALS AGLLLLANA++NAIY+
Sbjct: 483 AGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIALSEAGLLLLANARRNAIYS 542
Query: 542 IHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDL 601
+HLDYG +P T MDY++EFTVTMPILSF GT++ + V+VYCVQT AIQQY LDL
Sbjct: 543 VHLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDHPEE--PFVKVYCVQTLAIQQYTLDL 602
Query: 602 SQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGSE 661
C+PPP +NV EK+DS VS+++ VE + L SG KPT+ P S P+ S+LVN SE
Sbjct: 603 FLCMPPPRENVGFEKSDSTVSREANLVE--STLETSGMKPTELPSVGSVPKPSILVNRSE 662
Query: 662 SATAERYPASTTSQDAASIA----NTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNL 721
+A +PA S A N E K + + S+ D SP +PLSPRLS L
Sbjct: 663 NANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAYAPSPQLPLSPRLSSKL 722
Query: 722 SGFRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKI-G 781
SG+ +PV +FE + G D+ RQ D + +VSS+++ R + +
Sbjct: 723 SGYHTPVEAFEQVLPHHKLGGKTSSADYFYVRQTDDVGGRNLDVSSVEENCRSKDTNVTP 782
Query: 782 REDLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVED 841
+D+S + +P FK PTHL+TPSEILM VSS+E + TE K + + NI++ VNND
Sbjct: 783 DDDVSGIRSPSAFFKQPTHLVTPSEILMGVSSTEASITTEDKRDRDANIEE--VNNDARG 842
Query: 842 TELEVKEV-EMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETY 901
E+E+KEV E ++ QNGE +N + E++E IFCSQAS+L E+AR + +
Sbjct: 843 LEVELKEVGEAQTSQNGEINYHETTENHTSESRENIFCSQASNLSTEMAR-------DRH 902
Query: 902 IIEESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGK 961
I E + +++ + Q G+ ++DVS K+ ES S+ L N+KGKK K K
Sbjct: 903 PITEGSAIPGDSMAYGQPLQAGDERGLDSRDVSAKLPESGSSSGL--VATNSKGKKQKAK 962
Query: 962 NSQALGLVSQSPSAFNSNESSTEPCGSSSLPPPEA-AFPPLLAIQDTLNQIMSTQKEMQK 1021
NSQ GL S S + N +S E S SL P A P LLA+Q+T+ Q+M++QKEMQ+
Sbjct: 963 NSQGPGLSSTSSNVANLADSFNEQ--SQSLNHPMADLLPQLLALQETMTQVMASQKEMQR 1022
Query: 1022 QMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITS 1081
Q+ + P+ KEGK+LE ALGR +EK+ K+NADAL A QEE+ KNEK LRD+ Q+I +
Sbjct: 1023 QLSNAVTGPIVKEGKKLEVALGRMIEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMN 1082
Query: 1082 LVANFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKAVSQ 1141
NF +K+L A EK +KKE +++GP +AR +TP IEKT+SSAIT+SFQRG+GDKAV+Q
Sbjct: 1083 ETTNFTSKELNAMFEKTMKKEFASVGPTLARVVTPVIEKTVSSAITESFQRGIGDKAVNQ 1142
Query: 1142 LEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTF 1201
LEK+VNSKLE TVARQIQAQFQTSG+Q LQ+ L+SS E+SVIP+FE SCK MFEQVDST
Sbjct: 1143 LEKSVNSKLETTVARQIQAQFQTSGRQVLQEGLRSSMESSVIPSFERSCKTMFEQVDSTL 1202
Query: 1202 QKGLVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGAN 1261
QKG+ +H++A QQ DS S LA LR+ I+SAS++ Q+L+ ELAE QR +AL AG+
Sbjct: 1203 QKGIGKHTSATQQRIDSGQSQLAHTLRETISSASSVTQALNRELAESQRNRLALTAAGS- 1262
Query: 1262 ASSMNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSW 1321
NPLVTQLSNGPLGAL EKVE P+DPT ELSR++SERKYEE+FT+ALQRSDV+IVSW
Sbjct: 1263 ----NPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSW 1322
Query: 1322 LCSQVDLRAILA-NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIA 1381
LCSQVDLR +LA NPL LSQGVLLSLLQQLACDI+ D SRK+GWMTDV A+NP+D MIA
Sbjct: 1323 LCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIA 1340
Query: 1382 MHVRPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK 1414
+H RPIFEQVYQIL+H R +++ +R+IMHV+NS+L++CK
Sbjct: 1383 VHARPIFEQVYQILHHHRNAPG---SDVSAVRLIMHVINSLLMSCK 1340
BLAST of CmaCh16G009740 vs. ExPASy Swiss-Prot
Match:
Q3ZAV8 (Enhancer of mRNA-decapping protein 4 OS=Rattus norvegicus OX=10116 GN=Edc4 PE=1 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 3.0e-34
Identity = 285/1308 (21.79%), Postives = 537/1308 (41.06%), Query Frame = 0
Query: 222 QLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGN-----IRVLNINTALRSLFRGHE 281
++++ P+ KY + + G IAV+ +++ Y ++ N +RV++++T+ R+L +G
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 282 KRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIV 341
V D+AF + LA +D G ++VW+++ K +I ++++ + G
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGDLFVWRLA-----LVKGKIQEEILVHIRQPEGTPLNH 236
Query: 342 HPRVCW---------HCHKQEVLVVGFGKSVLRIDTTKVGKGESF-SAEAPIKFSLDKLI 401
R+ W C ++ V ++L D +V + S+ + + ++
Sbjct: 237 FRRIIWCPFIPEESEDCCEESSPTV----ALLHEDRAEVWDLDMLRSSHSTWPVDVSQIK 296
Query: 402 DGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWE---DRKASP--LLVLRPHDGQ 461
G +V H ++E ++ T L +AS DG +K W+ + + P L +PHDG+
Sbjct: 297 QGFIVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGR 356
Query: 462 PVNAATFL-----TAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTL 521
P++ F P P LIT NRE+K+W + SW C QT+
Sbjct: 357 PLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQTI 416
Query: 522 ELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFT 581
S V ++ A L+L++ ++ +Y + L + I+EF
Sbjct: 417 RFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFL 476
Query: 582 VTMPILSFTGTSEILDRLTH------------------------------IVQVYCVQTQ 641
+T P+LSF RL H +++++CV T+
Sbjct: 477 LTHPVLSFGIQVVSRCRLRHTEVLPAEEESDSLGTESSHGAGTLESAAGVLIKLFCVHTK 536
Query: 642 AIQQYALDLSQCLPP----PLD-NVVLEKADSNVSQDSAGVEGLAALFPSGSKP------ 701
A+Q + L P PL + E S+ G EGLA+ P GS+P
Sbjct: 537 ALQDVQIRFQPQLNPDVVAPLSTHTAHEDFTFGESRPELGSEGLASA-PHGSQPDLRRIV 596
Query: 702 ------------------TDTPFTSSTPRGSV-LVNGSESATAERYPASTTSQDAASIAN 761
TP TP S+ ++ S S+++ +S++S ++S ++
Sbjct: 597 ELPAPADFLSLSSETKPKLMTPDAFMTPTASLQQISASPSSSSSSSSSSSSSSSSSSSSS 656
Query: 762 TESKPATLSPVASNTDIVSTASPPIPLSPRLSRNLSGFRSPVVSFEP-----ITAVSDHA 821
+ A S A + + S + LSP+L + S S S + + +
Sbjct: 657 LTAVSAVSSSSAMDPSLPSRPPEELTLSPKLQLDGSLTISSSSSLQASPRSLLPGLLPGP 716
Query: 822 GDR--RGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIGREDLSNVLNPPIVFKHPTH 881
D+ V+ A+ +L EV L + + S +P ++ T
Sbjct: 717 ADKLIPKGPGQVSSGTSALSLDLQEVEPLG---------LPQASPSRTRSPDVISSASTA 776
Query: 882 LI--TPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTELEVKEVEMKSPQNGE 941
L P A+S ++V EG E ++ + + + E+ + +G
Sbjct: 777 LSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASALHLLSPRPRQGPELSSQLGLDGG 836
Query: 942 YG---RRGEPQNLSPENKEKIFC--SQASDLGMEVARE-CSTL--SSETYIIEESPQVDA 1001
G R P L +++ SQ ++ RE CSTL S + E+ +
Sbjct: 837 PGDGDRHSTPSLLEAALTQEVATSDSQVWPTAPDITRETCSTLTESPRNGLQEKHKSLAF 896
Query: 1002 NT----INTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGK--KNKGKNSQA 1061
+ + + DSQ +++ D ++ +S +IPTP K K KG +
Sbjct: 897 HRPPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFGSKIPTPRLPAKDWKTKGSPRTS 956
Query: 1062 LGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQTT 1121
L +S + + + PPE + Q L ++ Q+E+ +++
Sbjct: 957 PKLKRKSKKDDGDSAVGSRLTEHQVVEPPEDWPALIWQQQRELAELWHNQEELLQRLCAQ 1016
Query: 1122 LAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITSLVANF 1181
L EG L++ + +E+AL+ + R++ A+ ++ +++T ++
Sbjct: 1017 L------EG--LQSTVTDHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQA 1076
Query: 1182 VNKDLPAFLEKALKKEM-STIGPAVARTITPAIEKTISSAITD-SFQRGVGDKAVSQLEK 1241
++ + LE++++ E+ T+ P V+R++ P + +S T + G + +S+L K
Sbjct: 1077 LSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLK 1136
Query: 1242 AVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKG 1301
+ N L +AR Q +Q A + +F++ V+PAFE SC+AMF+Q++ +F+ G
Sbjct: 1137 SKN--LTDAIARAAADTLQ----GPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLG 1196
Query: 1302 LVEHSAAAQQHFDSSHS--------------SLALALRDAINS-ASTMAQSLSGE----- 1361
E+ H S + L L++A A+T++ S+ E
Sbjct: 1197 TQEYLQQLDSHMKSRKAREQEAREPVLAQLRGLVSTLQNATEQMAATVSSSVRAEVQHQL 1256
Query: 1362 -----------LAEGQRKL-----IALATAGAN-ASSMNPLVTQLSNGPLGALHEKVEVP 1382
LA+ QR + +AL A SS+ + + P+ + H +
Sbjct: 1257 HVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQA- 1316
BLAST of CmaCh16G009740 vs. ExPASy Swiss-Prot
Match:
Q3UJB9 (Enhancer of mRNA-decapping protein 4 OS=Mus musculus OX=10090 GN=Edc4 PE=1 SV=2)
HSP 1 Score: 145.6 bits (366), Expect = 4.3e-33
Identity = 281/1306 (21.52%), Postives = 528/1306 (40.43%), Query Frame = 0
Query: 222 QLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGN-----IRVLNINTALRSLFRGHE 281
++++ P+ KY + + G IAV+ +++ Y ++ N +RV++++T+ R+L +G
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 282 KRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIV 341
V D+AF + LA +D G ++VW+++ K +I ++++ + G
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGNLFVWRLA-----LVKGKIQEEILVHIRQPEGTALNH 236
Query: 342 HPRVCW---------HCHKQEVLVVGFGKSVLRIDTTKVGKGESF-SAEAPIKFSLDKLI 401
R+ W C ++ V ++L D +V + S+ + ++
Sbjct: 237 FRRIIWCPFIPEESEDCCEESSPTV----ALLHEDRAEVWDLDMLRSSHNTWPVDVSQIK 296
Query: 402 DGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWE---DRKASP--LLVLRPHDGQ 461
G +V H ++E ++ T L +AS DG +K W+ + + P L +PHDG+
Sbjct: 297 QGFIVVKGHSTCLSEGALSPDGTV-LATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGR 356
Query: 462 PVNAATFL-----TAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTL 521
P++ F P P LIT NRE+K+W + SW C QT+
Sbjct: 357 PLSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTV------------SWTCLQTI 416
Query: 522 ELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFT 581
S V ++ A L+L++ ++ +Y + L + I+EF
Sbjct: 417 RFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQDEGRACFSSISEFL 476
Query: 582 VTMPILSFTGTSEILDRLTH------------------------------IVQVYCVQTQ 641
+T P+LSF RL H +++++CV T+
Sbjct: 477 LTHPVLSFGIQVVSRCRLRHTEVLPAEEENDSLGTESSHGAGALESAAGVLIKLFCVHTK 536
Query: 642 AIQQYALDLSQCLPP----PLD-NVVLEKADSNVSQDSAGVEGLAAL------------- 701
A+Q + L P PL + E S+ G EGLA+
Sbjct: 537 ALQDVQIRFQPQLNPDVVAPLSTHTAHEDFTFGESRPELGSEGLASAAHGSQPDLRRIVE 596
Query: 702 ---------FPSGSKP-TDTPFTSSTPRGSV-----LVNGSESATAERYPASTTSQDAAS 761
S +KP TP TP S+ + S S+++ +S++S + +
Sbjct: 597 LPAPADFLSLSSETKPELMTPDAFMTPTASLQQISASPSSSSSSSSSSSSSSSSSSSSLT 656
Query: 762 IANTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNLSGFRSPVVSFEPITAVSDHAGD 821
+ S + + P T SP + L L+ N S + + D
Sbjct: 657 AVSAVSSSSAMDPSLPRPPEELTLSPKLQLDGSLTLNSSSSSLQASPRSLLPGLLPGPAD 716
Query: 822 R--RGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIGREDLSNVLNPPIVFKHPTHLI 881
+ V+ A+ +L EV L + + S +P ++ T L
Sbjct: 717 KLISKGPGQVSTAASALSLDLQEVEPLG---------LPQASPSRTRSPDVISSASTALS 776
Query: 882 --TPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTELEVKEVEMKSPQNGEYG 941
P A+S ++V EG E + + + + E+ + +G G
Sbjct: 777 QDIPEIASEALSRGFGSSVPEGLIEPNSMASAASALHLLSPRPRQGPELGSQLGLDGGPG 836
Query: 942 ---RRGEPQNLSPENKEKIFC--SQASDLGMEVARE-CSTL--SSETYIIEESPQVDANT 1001
R P L +++ SQ ++ RE CSTL S + E+ + +
Sbjct: 837 DGDRHSTPSLLEAALTQEVATPDSQVWPTAPDITRETCSTLTESPRNGLQEKHKSLAFHR 896
Query: 1002 ----INTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNSQALGLV 1061
+ + DSQ +++ D ++ +S +IPTP K K K S
Sbjct: 897 PPYHLLQQRDSQDTSAEQSDHDDEVASLASASGGFGSKIPTPRLPSKDWKTKGSPRTSPK 956
Query: 1062 SQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQK--QMQTTLA 1121
+ S + +S+ S L + A PP +D I Q+E+ + Q L
Sbjct: 957 LKRKSKKDDGDSAV----GSRLTEHQVAEPP----EDWPALIWQQQRELAELWHNQEELL 1016
Query: 1122 VPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITSLVANFVN 1181
+ + + L++ + +E+AL+ + R++ A+ ++ +++T ++ ++
Sbjct: 1017 QRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQQLSQALS 1076
Query: 1182 KDLPAFLEKALKKEM-STIGPAVARTITPAIEKTISSAITD-SFQRGVGDKAVSQLEKAV 1241
+ LE++++ E+ T+ P V+R++ P + +S T + G + +S+L K+
Sbjct: 1077 SAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVEGSMKENISKLLKSK 1136
Query: 1242 NSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKGLV 1301
N L +AR Q +Q A + +F++ V+PAFE SC+AMF+Q++ +F+ G
Sbjct: 1137 N--LTDAIARAAADTLQ----GPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQ 1196
Query: 1302 EHSAAAQQHFDS-------SHSSLALALRDAINS--------ASTMAQSLSGE------- 1361
E+ + H S + + LR +++ A+T++ S+ E
Sbjct: 1197 EYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSVRAEVQHQLHV 1256
Query: 1362 ---------LAEGQRKL-----IALATAGAN-ASSMNPLVTQLSNGPLGALHEKVEVPLD 1382
LA+ QR + +AL A SS+ + + P+ + H +
Sbjct: 1257 AVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHLDCQA--- 1316
BLAST of CmaCh16G009740 vs. ExPASy Swiss-Prot
Match:
Q6P2E9 (Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 1.1e-31
Identity = 282/1314 (21.46%), Postives = 535/1314 (40.72%), Query Frame = 0
Query: 222 QLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGN-----IRVLNINTALRSLFRGHE 281
++++ P+ KY + + G IAV+ +++ Y ++ N +RV++++T+ R+L +G
Sbjct: 117 KVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFT 176
Query: 282 KRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKV--VISLHMEGGEGE 341
V D+AF + LA +D G ++VW+++ + GK+ I +H+ EG
Sbjct: 177 GSVADLAFAHLNSPQLACLDEAGNLFVWRLA---------LVNGKIQEEILVHIRQPEGT 236
Query: 342 IVH--PRVCW---------HCHKQEVLVVGFGKSVLRIDTTKVGKGESF-SAEAPIKFSL 401
++ R+ W C ++ V ++L D +V + S+ + +
Sbjct: 237 PLNHFRRIIWCPFIPEESEDCCEESSPTV----ALLHEDRAEVWDLDMLRSSHSTWPVDV 296
Query: 402 DKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWE---DRKASP--LLVLRP 461
++ G +V H ++E ++ T L +AS DG +K W+ + + P L +P
Sbjct: 297 SQIKQGFIVVKGHSTCLSEGALSPDGTV-LATASHDGYVKFWQIYIEGQDEPRCLHEWKP 356
Query: 462 HDGQPVNAATFL-----TAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKC 521
HDG+P++ F P+ P LIT NRE+K+W + SW C
Sbjct: 357 HDGRPLSCLLFCDNHKKQDPDVPFWRFLITGADQNRELKMWCTV------------SWTC 416
Query: 522 TQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYI 581
QT+ S V ++ A L+L++ ++ +Y + L I
Sbjct: 417 LQTIRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGHACFSSI 476
Query: 582 AEFTVTMPILSFTGTSEILDRLTH------------------------------IVQVYC 641
+EF +T P+LSF RL H +++++C
Sbjct: 477 SEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEEENDSLGADGTHGAGAMESAAGVLIKLFC 536
Query: 642 VQTQAIQQYALDLSQCLPP----PL-DNVVLEKADSNVSQDSAGVEGLAALFPSGSK--- 701
V T+A+Q + L P PL + E S+ G EGL + GS+
Sbjct: 537 VHTKALQDVQIRFQPQLNPDVVAPLPTHTAHEDFTFGESRPELGSEGLGSA-AHGSQPDL 596
Query: 702 --------PTDTPFTSSTPRGSVLVNG---SESATAERYPASTTSQDAASIANTESKPAT 761
P D SS + ++ + SA+ ++ AS +S + S +++ S ++
Sbjct: 597 RRIVELPAPADFLSLSSETKPKLMTPDAFMTPSASLQQITASPSSSSSGSSSSSSSSSSS 656
Query: 762 LSPVA--SNTDIV--STASPP--IPLSPRLSRNLSGFRSPVVSFEP---------ITAVS 821
L+ V+ S+T V S PP + LSP+L + S S S + + A +
Sbjct: 657 LTAVSAMSSTSAVDPSLTRPPEELTLSPKLQLDGSLTMSSSGSLQASPRGLLPGLLPAPA 716
Query: 822 DHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIGREDLSNVLNPPIVFKHPT 881
D + V A+ L EV L + + S +P ++ T
Sbjct: 717 DKLTPK--GPGQVPTATSALSLELQEVEPLG---------LPQASPSRTRSPDVISSAST 776
Query: 882 HLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTELEVKEVEMKSPQNGEY 941
L +I S + + EG + + + PQ G
Sbjct: 777 AL--SQDIPEIASEALSRGFGSSAPEGLEPDSMASAASALHLLSPRPRPGPELGPQLGLD 836
Query: 942 GRRGE-PQNLSPENKEKIFCSQASDLGMEVARECSTLSSET-YIIEESPQVDANT----- 1001
G G+ ++ +P E +AS +V ++ ET + ESP+
Sbjct: 837 GGPGDGDRHNTPSLLEAALTQEASTPDSQVWPTAPDITRETCSTLAESPRNGLQEKHKSL 896
Query: 1002 --------INTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNSQA 1061
+ + DSQ +++ D ++ +S ++P P K K K S
Sbjct: 897 AFHRPPYHLLQQRDSQDASAEQSDHDDEVASLASASGGFGTKVPAPRLPAKDWKTKGSPR 956
Query: 1062 LGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPP------LLAIQDTLNQIMSTQKEMQ 1121
+ S + +++ S L + A PP + Q L ++ +Q+E+
Sbjct: 957 TSPKLKRKSKKDDGDAAM----GSRLTEHQVAEPPEDWPALIWQQQRELAELRHSQEELL 1016
Query: 1122 KQMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKIT 1181
+++ T L EG L++ + +E+AL+ + R++ A+ ++ +++T
Sbjct: 1017 QRLCTQL------EG--LQSTVTGHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLT 1076
Query: 1182 SLVANFVNKDLPAFLEKALKKEM-STIGPAVARTITPAIEKTISSAITD-SFQRGVGDKA 1241
++ ++ + LE++++ E+ T+ P V+R++ P + +S T + G +
Sbjct: 1077 QQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKEN 1136
Query: 1242 VSQLEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVD 1301
+S+L K+ N L +AR Q +Q A + +F++ V+PAFE SC+AMF+Q++
Sbjct: 1137 ISKLLKSKN--LTDAIARAAADTLQ----GPMQAAYREAFQSVVLPAFEKSCQAMFQQIN 1196
Query: 1302 STFQKGLVEHSAAAQQHFDS-------SHSSLALALRDAINS--------ASTMAQSLSG 1361
+F+ G E+ + H S + + LR +++ A+T+A S+
Sbjct: 1197 DSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVAGSVRA 1256
Query: 1362 E----------------------LAEGQRKLIALATAGANASSMNPLVTQLSNGPLGALH 1382
E + +G+ + A SS+ + + P+ + H
Sbjct: 1257 EVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAH 1316
BLAST of CmaCh16G009740 vs. TAIR 10
Match:
AT3G13300.1 (Transducin/WD40 repeat-like superfamily protein )
HSP 1 Score: 1452.2 bits (3758), Expect = 0.0e+00
Identity = 817/1423 (57.41%), Postives = 1022/1423 (71.82%), Query Frame = 0
Query: 2 ASTGNPNPNPPNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYP 61
+S GN NP+ PPFD+ FKP +S+P+PPP++SYPPPTGPF +
Sbjct: 3 SSPGNTNPH-NTPPFDLGILFKP---------------SSNPYPPPAASYPPPTGPFLHN 62
Query: 62 LQNAPFHHPYHSPHLPNQVPYSQDQFS------NLHHQRSLSYPTPPLQPSAPPVNVGVP 121
+ + P P+ V Q S NLH QR+LSYPTPPL +P N
Sbjct: 63 QYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSN---- 122
Query: 122 QNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPN--IPIMTTI 181
+NP G I+A++ + ++G P ++ P+ +P++
Sbjct: 123 -HNP----GTHILALLN--------------------NTNNGAPVANQEPSHQLPVVNHN 182
Query: 182 PMIQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTPITKYGS 241
+ + G +GP+R+PS KLPKGR LIG++ VYDV+VRLQGEIQPQLEVTPITKYGS
Sbjct: 183 EIARSFPGG---SGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGS 242
Query: 242 DPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLA 301
DPQLV+GRQIAVNK YICYGLK GNIRVLNINTALRSLFRGH +RVTDMAFFAEDV +LA
Sbjct: 243 DPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLA 302
Query: 302 SVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVG 361
SV + G+V+VWKISEG + E +PQITGK+V++L + GE + HPRVCWHCHKQE+LVV
Sbjct: 303 SVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQIL-GEEDTKHPRVCWHCHKQEILVVS 362
Query: 362 FGKSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLV 421
GK VLRIDTTKVG+GE FSAEAP++ LDKLIDGVQ+VGKHDGEVT+LSMCQWMT+RLV
Sbjct: 363 IGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLV 422
Query: 422 SASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIW 481
S+S+DGTIKIW+DRKA PL+VLRPHDG PV++ATF+T+P RPDHIILIT GPLNRE+KIW
Sbjct: 423 SSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIW 482
Query: 482 SSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAI 541
SA EEGWLLP+DAESW+CTQTL+LKSS E + EEAFFNQ++ALS AGLLLLANAK+NA+
Sbjct: 483 VSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNAL 542
Query: 542 YAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYAL 601
YA+HLDYG +P TRMDY++EFTVTMPILSF GT++ + IV+VYCVQT AIQQY L
Sbjct: 543 YAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEE--PIVKVYCVQTLAIQQYTL 602
Query: 602 DLSQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNG 661
DL CLPPP++N+ LEK+DS+VS+++ VEG++ PSG KPTD P S P+ S++VN
Sbjct: 603 DLCLCLPPPIENMGLEKSDSSVSREANLVEGMSE--PSGLKPTDLPSVDSVPKPSIIVNR 662
Query: 662 SESATAERYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNLSG 721
SESA +P++ + A N E K + L S P +PLSPRLS LSG
Sbjct: 663 SESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLSSKLSG 722
Query: 722 FRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKI-GRE 781
+ +PV + EP+ + G D+SV+RQMDA+ +VSS+++ SR + + +
Sbjct: 723 YHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSNVTPDD 782
Query: 782 DLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTE 841
D+S + +P FKHPTHL+TPSEILM VSS+E + TE + + + NIQD VNND DTE
Sbjct: 783 DVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQD--VNNDPRDTE 842
Query: 842 LEVKEV-EMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETYII 901
+EVKE+ E +S QNGE E +N + EN+EK+FCSQ S+L E+AR+C + T+I
Sbjct: 843 VEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPSTEGTFIP 902
Query: 902 EESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNS 961
ES G A D S S P KGKK K KNS
Sbjct: 903 GES---------------KAYGQPIKAGDESGVDSRGG-------PAKLLKGKKQKAKNS 962
Query: 962 QALGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQ 1021
Q GL S S + N +S E S S P + P LLA+Q+T+NQ+M++QKEMQ+Q+
Sbjct: 963 QGPGLSSTSSNVANLADSFNEQSQSLSHPMTD-LLPQLLAMQETMNQVMASQKEMQRQLS 1022
Query: 1022 TTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITSLVA 1081
P+ KE KRLE ALGR +EK+ K+NADAL ARIQEE+ KNEK LRD+ Q+I +
Sbjct: 1023 NAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIVNATT 1082
Query: 1082 NFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKAVSQLEK 1141
NF++K+L A EK +KKE++ IGPA+AR++ P IEKT+SSAIT+SFQRG+GDKAV+QL+K
Sbjct: 1083 NFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDK 1142
Query: 1142 AVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKG 1201
+VN KLEATVARQIQAQFQTSGKQALQ+ L+SS E+SVIP+FE +CKAMF+Q+DS FQKG
Sbjct: 1143 SVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSAFQKG 1202
Query: 1202 LVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASS 1261
+ EH+ AAQQ FDS HS LA L+++I SAS++AQ+LS ELAE QR L+ALA AGAN+
Sbjct: 1203 IAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGG 1262
Query: 1262 MNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSWLCS 1321
N LVTQLS GPLGAL EKVE P+DPT ELSR++SERKYEE+FT+ALQRSDV+IVSWLCS
Sbjct: 1263 SNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCS 1322
Query: 1322 QVDLRAILA-NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIAMHV 1381
QVDLR +LA NPL LSQGVLLSLLQQLACDI+KD SRK+ WMTDV AA+NP+D MIA+H
Sbjct: 1323 QVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHA 1344
Query: 1382 RPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK 1414
RPIFEQVYQIL+H R +++ IR+IMHV+NSML+ CK
Sbjct: 1383 RPIFEQVYQILHHHRNAPG---SDVSAIRLIMHVINSMLMGCK 1344
BLAST of CmaCh16G009740 vs. TAIR 10
Match:
AT3G13300.2 (Transducin/WD40 repeat-like superfamily protein )
HSP 1 Score: 1421.4 bits (3678), Expect = 0.0e+00
Identity = 794/1369 (58.00%), Postives = 991/1369 (72.39%), Query Frame = 0
Query: 56 GPFSYPLQNAPFHHPYHSPHLPNQVPYSQDQFS------NLHHQRSLSYPTPPLQPSAPP 115
GPF + + + P P+ V Q S NLH QR+LSYPTPPL +P
Sbjct: 6 GPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPR 65
Query: 116 VNVGVPQNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPN--I 175
N +NP G I+A++ + ++G P ++ P+ +
Sbjct: 66 SN-----HNP----GTHILALLN--------------------NTNNGAPVANQEPSHQL 125
Query: 176 PIMTTIPMIQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTP 235
P++ + + G +GP+R+PS KLPKGR LIG++ VYDV+VRLQGEIQPQLEVTP
Sbjct: 126 PVVNHNEIARSFPGG---SGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTP 185
Query: 236 ITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAE 295
ITKYGSDPQLV+GRQIAVNK YICYGLK GNIRVLNINTALRSLFRGH +RVTDMAFFAE
Sbjct: 186 ITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAE 245
Query: 296 DVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQ 355
DV +LASV + G+V+VWKISEG + E +PQITGK+V++L + GE + HPRVCWHCHKQ
Sbjct: 246 DVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQIL-GEEDTKHPRVCWHCHKQ 305
Query: 356 EVLVVGFGKSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQW 415
E+LVV GK VLRIDTTKVG+GE FSAEAP++ LDKLIDGVQ+VGKHDGEVT+LSMCQW
Sbjct: 306 EILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQW 365
Query: 416 MTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLN 475
MT+RLVS+S+DGTIKIW+DRKA PL+VLRPHDG PV++ATF+T+P RPDHIILIT GPLN
Sbjct: 366 MTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLN 425
Query: 476 REVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLAN 535
RE+KIW SA EEGWLLP+DAESW+CTQTL+LKSS E + EEAFFNQ++ALS AGLLLLAN
Sbjct: 426 REMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLAN 485
Query: 536 AKKNAIYAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQA 595
AK+NA+YA+HLDYG +P TRMDY++EFTVTMPILSF GT++ + IV+VYCVQT A
Sbjct: 486 AKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEE--PIVKVYCVQTLA 545
Query: 596 IQQYALDLSQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRG 655
IQQY LDL CLPPP++N+ LEK+DS+VS+++ VEG++ PSG KPTD P S P+
Sbjct: 546 IQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSE--PSGLKPTDLPSVDSVPKP 605
Query: 656 SVLVNGSESATAERYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPIPLSPRL 715
S++VN SESA +P++ + A N E K + L S P +PLSPRL
Sbjct: 606 SIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRL 665
Query: 716 SRNLSGFRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEE 775
S LSG+ +PV + EP+ + G D+SV+RQMDA+ +VSS+++ SR +
Sbjct: 666 SSKLSGYHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDS 725
Query: 776 KI-GREDLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNN 835
+ +D+S + +P FKHPTHL+TPSEILM VSS+E + TE + + + NIQD VNN
Sbjct: 726 NVTPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQD--VNN 785
Query: 836 DVEDTELEVKEV-EMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLS 895
D DTE+EVKE+ E +S QNGE E +N + EN+EK+FCSQ S+L E+AR+C +
Sbjct: 786 DPRDTEVEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPST 845
Query: 896 SETYIIEESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKK 955
T+I ES G A D S S P KGKK
Sbjct: 846 EGTFIPGES---------------KAYGQPIKAGDESGVDSRGG-------PAKLLKGKK 905
Query: 956 NKGKNSQALGLVSQSPSAFNSNESSTEPCGSSSLPPPEAAFPPLLAIQDTLNQIMSTQKE 1015
K KNSQ GL S S + N +S E S S P + P LLA+Q+T+NQ+M++QKE
Sbjct: 906 QKAKNSQGPGLSSTSSNVANLADSFNEQSQSLSHPMTD-LLPQLLAMQETMNQVMASQKE 965
Query: 1016 MQKQMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQK 1075
MQ+Q+ P+ KE KRLE ALGR +EK+ K+NADAL ARIQEE+ KNEK LRD+ Q+
Sbjct: 966 MQRQLSNAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQ 1025
Query: 1076 ITSLVANFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKA 1135
I + NF++K+L A EK +KKE++ IGPA+AR++ P IEKT+SSAIT+SFQRG+GDKA
Sbjct: 1026 IVNATTNFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKA 1085
Query: 1136 VSQLEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVD 1195
V+QL+K+VN KLEATVARQIQAQFQTSGKQALQ+ L+SS E+SVIP+FE +CKAMF+Q+D
Sbjct: 1086 VNQLDKSVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQID 1145
Query: 1196 STFQKGLVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATA 1255
S FQKG+ EH+ AAQQ FDS HS LA L+++I SAS++AQ+LS ELAE QR L+ALA A
Sbjct: 1146 SAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAA 1205
Query: 1256 GANASSMNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNI 1315
GAN+ N LVTQLS GPLGAL EKVE P+DPT ELSR++SERKYEE+FT+ALQRSDV+I
Sbjct: 1206 GANSGGSNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSI 1265
Query: 1316 VSWLCSQVDLRAILA-NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDP 1375
VSWLCSQVDLR +LA NPL LSQGVLLSLLQQLACDI+KD SRK+ WMTDV AA+NP+D
Sbjct: 1266 VSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQ 1309
Query: 1376 MIAMHVRPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK 1414
MIA+H RPIFEQVYQIL+H R +++ IR+IMHV+NSML+ CK
Sbjct: 1326 MIAVHARPIFEQVYQILHHHRNAPG---SDVSAIRLIMHVINSMLMGCK 1309
BLAST of CmaCh16G009740 vs. TAIR 10
Match:
AT3G13290.1 (varicose-related )
HSP 1 Score: 1375.5 bits (3559), Expect = 0.0e+00
Identity = 791/1426 (55.47%), Postives = 994/1426 (69.71%), Query Frame = 0
Query: 2 ASTGNPNPNPPNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYP 61
+S GN NP+ P PPFD+ FKP+ SNP YPPPTGPF
Sbjct: 3 SSPGNTNPHNP-PPFDLGTIFKPS-SNP---------------------YPPPTGPFLNN 62
Query: 62 LQNAPFHHPYHSPHLPNQVPYSQDQFS------NLHHQRSLSYPTPPLQPSAPPVNVGVP 121
N + P P+ V +Q S NL QR+LSYPTPPL P +P VN
Sbjct: 63 QYNQQLYAPPGIAAQPSPVNQTQQDVSSSSSATNLQPQRTLSYPTPPLNPQSPRVN---- 122
Query: 122 QNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLGSMPSPSSGIPESSAPPNIPIMTTIPM 181
+NP G I+A++ G+ Q PS + I +
Sbjct: 123 -HNP----GTHILALLNNGGAVANQ----------EPSHHNEIARAF------------- 182
Query: 182 IQGVNPGISPTGPVRMPSSKLPKGRHLIGDYVVYDVNVRLQGEIQPQLEVTPITKYGSDP 241
PG S GP+ +PS K+PKGR L+G++ VYDV+VRLQGEIQPQLEVTPITKYGSDP
Sbjct: 183 -----PGGS--GPIHVPSGKMPKGRRLVGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDP 242
Query: 242 QLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASV 301
QLVLGRQIAVNK YICYGLK G+IRVLNINTALRSLFRGH +RVTDMAFFAEDVHLLASV
Sbjct: 243 QLVLGRQIAVNKVYICYGLKGGSIRVLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASV 302
Query: 302 DVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFG 361
+ G+V+VWKISEG + + + QITGK+V++L + GE + HPRVCWHCHKQE+LVV G
Sbjct: 303 SLDGKVFVWKISEGSEGDEQSQITGKIVVALQIL-GEEDTKHPRVCWHCHKQEILVVSIG 362
Query: 362 KSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSA 421
K VLRIDTTKVG+GE FSAEAP++ LDKLIDGVQ+VGKHDGEVT+LSMCQWMT+RLVS+
Sbjct: 363 KHVLRIDTTKVGRGEVFSAEAPLQCHLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSS 422
Query: 422 SMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSS 481
S+DGT+KIW+DRK PL+VLRPHDG PVN+A F+T+P RPDHIILIT GPLNRE+KIW S
Sbjct: 423 SVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPDHIILITGGPLNREIKIWVS 482
Query: 482 ASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYA 541
A EEGWLLP+D ESW+CTQTL+LKSS E Q E+AFFNQ++ALS AGLLLLANA++NAIY+
Sbjct: 483 AGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIALSEAGLLLLANARRNAIYS 542
Query: 542 IHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDL 601
+HLDYG +P T MDY++EFTVTMPILSF GT++ + V+VYCVQT AIQQY LDL
Sbjct: 543 VHLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDHPEE--PFVKVYCVQTLAIQQYTLDL 602
Query: 602 SQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGSE 661
C+PPP +NV EK+DS VS+++ VE + L SG KPT+ P S P+ S+LVN SE
Sbjct: 603 FLCMPPPRENVGFEKSDSTVSREANLVE--STLETSGMKPTELPSVGSVPKPSILVNRSE 662
Query: 662 SATAERYPASTTSQDAASIA----NTESKPATLSPVASNTDIVSTASPPIPLSPRLSRNL 721
+A +PA S A N E K + + S+ D SP +PLSPRLS L
Sbjct: 663 NANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAYAPSPQLPLSPRLSSKL 722
Query: 722 SGFRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKI-G 781
SG+ +PV +FE + G D+ RQ D + +VSS+++ R + +
Sbjct: 723 SGYHTPVEAFEQVLPHHKLGGKTSSADYFYVRQTDDVGGRNLDVSSVEENCRSKDTNVTP 782
Query: 782 REDLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVED 841
+D+S + +P FK PTHL+TPSEILM VSS+E + TE K + + NI++ VNND
Sbjct: 783 DDDVSGIRSPSAFFKQPTHLVTPSEILMGVSSTEASITTEDKRDRDANIEE--VNNDARG 842
Query: 842 TELEVKEV-EMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETY 901
E+E+KEV E ++ QNGE +N + E++E IFCSQAS+L E+AR + +
Sbjct: 843 LEVELKEVGEAQTSQNGEINYHETTENHTSESRENIFCSQASNLSTEMAR-------DRH 902
Query: 902 IIEESPQVDANTINTEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGK 961
I E + +++ + Q G+ ++DVS K+ ES S+ L N+KGKK K K
Sbjct: 903 PITEGSAIPGDSMAYGQPLQAGDERGLDSRDVSAKLPESGSSSGL--VATNSKGKKQKAK 962
Query: 962 NSQALGLVSQSPSAFNSNESSTEPCGSSSLPPPEA-AFPPLLAIQDTLNQIMSTQKEMQK 1021
NSQ GL S S + N +S E S SL P A P LLA+Q+T+ Q+M++QKEMQ+
Sbjct: 963 NSQGPGLSSTSSNVANLADSFNEQ--SQSLNHPMADLLPQLLALQETMTQVMASQKEMQR 1022
Query: 1022 QMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKITS 1081
Q+ + P+ KEGK+LE ALGR +EK+ K+NADAL A QEE+ KNEK LRD+ Q+I +
Sbjct: 1023 QLSNAVTGPIVKEGKKLEVALGRMIEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMN 1082
Query: 1082 LVANFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAITDSFQRGVGDKAVSQ 1141
NF +K+L A EK +KKE +++GP +AR +TP IEKT+SSAIT+SFQRG+GDKAV+Q
Sbjct: 1083 ETTNFTSKELNAMFEKTMKKEFASVGPTLARVVTPVIEKTVSSAITESFQRGIGDKAVNQ 1142
Query: 1142 LEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTF 1201
LEK+VNSKLE TVARQIQAQFQTSG+Q LQ+ L+SS E+SVIP+FE SCK MFEQVDST
Sbjct: 1143 LEKSVNSKLETTVARQIQAQFQTSGRQVLQEGLRSSMESSVIPSFERSCKTMFEQVDSTL 1202
Query: 1202 QKGLVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGAN 1261
QKG+ +H++A QQ DS S LA LR+ I+SAS++ Q+L+ ELAE QR +AL AG+
Sbjct: 1203 QKGIGKHTSATQQRIDSGQSQLAHTLRETISSASSVTQALNRELAESQRNRLALTAAGS- 1262
Query: 1262 ASSMNPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSERKYEEAFTTALQRSDVNIVSW 1321
NPLVTQLSNGPLGAL EKVE P+DPT ELSR++SERKYEE+FT+ALQRSDV+IVSW
Sbjct: 1263 ----NPLVTQLSNGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSW 1322
Query: 1322 LCSQVDLRAILA-NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIA 1381
LCSQVDLR +LA NPL LSQGVLLSLLQQLACDI+ D SRK+GWMTDV A+NP+D MIA
Sbjct: 1323 LCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLGWMTDVVTAINPSDQMIA 1340
Query: 1382 MHVRPIFEQVYQILNHQRTLSSISPVELTGIRIIMHVVNSMLVTCK 1414
+H RPIFEQVYQIL+H R +++ +R+IMHV+NS+L++CK
Sbjct: 1383 VHARPIFEQVYQILHHHRNAPG---SDVSAVRLIMHVINSLLMSCK 1340
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LTT8 | 0.0e+00 | 57.41 | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1... | [more] |
Q9LTT9 | 0.0e+00 | 55.47 | Varicose-related protein OS=Arabidopsis thaliana OX=3702 GN=VCR PE=2 SV=1 | [more] |
Q3ZAV8 | 3.0e-34 | 21.79 | Enhancer of mRNA-decapping protein 4 OS=Rattus norvegicus OX=10116 GN=Edc4 PE=1 ... | [more] |
Q3UJB9 | 4.3e-33 | 21.52 | Enhancer of mRNA-decapping protein 4 OS=Mus musculus OX=10090 GN=Edc4 PE=1 SV=2 | [more] |
Q6P2E9 | 1.1e-31 | 21.46 | Enhancer of mRNA-decapping protein 4 OS=Homo sapiens OX=9606 GN=EDC4 PE=1 SV=1 | [more] |