CmaCh16G009700 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 7475423 .. 7477490 (-)
RNA-Seq ExpressionCmaCh16G009700
SyntenyCmaCh16G009700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCACCATTGAATTGAAGTCGGTAAGATCCAATTGGATTATAAACTTATTCGAATTAAATTAAGTTCGCTTATTATTTCCACAAAGATAATTTTATGTTTTTTTTTTAATTATTTATTTTCTAACCCATCTTAAAAATAAATTTAAGGAATGTAATTTTTTAAATATATATTTAAATTGGATGGCAAACTTAATTAAATATTTAAAAATAAATAAATACATATTTTATAAATTAAAATTTTACTTTTATTAGAAATAAAATTCATAGAGCAGAGAGATTTCGAATGAGAGTTTTGAAAGCAAGATTGAAATGGGTGTTATATGTGATGCAAGCAAAAAGGCGACAACAACGACTTACAACATATAACTATTGGGTAGGGAGAAGTTGACAACTAGTCATATCCCCTATAGTACATTTTGGGGCATTTTTGCCGAAACGAGTCTACATGTGATTCTCGTGAATGGTCGTATACCCCCGTATTGAGCCAATATGAAATGGTAAATGGTTATCTAAGATGAAAGTATGAAAAAAGGGGTTTGGAACGGGCATGCAACCATAGACAACACGCCTTGGACAAGCATGACCGTGACATTCTCCCCCACTCAATTGGTTGACGTCCCTGTCAACCGACTTGAACAAGCAAGACTGGGACATATGTCATGCAGCCTTAAGCAAAATGCTTTGGACAAGCATGACTGCGACATTCTCCCTATCAACCGACTTAGACAAGCAAGATTGGGACATATGTCATGCGGCCATAGGCAACATGCTTTGGACAAGCATGACCGTGACATCCTCCCCCACTCAATTGGTTGACGTCTCTGTCAACCGACTCGAACAAGCAAAACTGCAACATCTGTCATGCTGCCATAAGCAAAATGCTTTGGACAAGCATGACCGTGACATTCTCCCTGTCAACCGACTTAGACAAGCAAGATTGAGACATATGTCATGTGGCCATACGCAATATGCTTTGGACAAGCATGACCGTGACATCCTCCCTCACTCAATTGGTTGACATCTCTGTCAACCGACTCTTTACAACTATGTGTTGTAGGCTGAGGTTGACTTTTAGGTCTCTTCAATGTGCTTCCAGTTGACTTCAATGTTGCGGAGTCTCGTTAAATCTGTAAGGAGCAGTTGAAAACTGTTTCTTGGTTCGTTGGCTCTTGACGTCTCCTCCATCAAAAAAAATTTGAATAATTGAATTTGATCTAAAAAATATTTCAACCCGACTCATCCCAACTTAACTCACGAACACTCTACCCTTAACAAATATGCTAATTTACGAAACAACGTGTTGGACGTTATTCAAGGTCACCCGATTCAAGTGGGTGGATCGAACGCTCTCTAAGATATTTTGAAATGGGAATATTATTACTTTTATTGGAAGATTCATGAAACATTTGGTGGCATAAATGAGCGTTGAAACCGGAAATAAATATCAGTGTATATCAATGGGCCGATGGGATAGTTTCATAAGGTAGCACAAAACAATGGGCTAACGTGGCTTCTCTAATACCCACTCCAAGAAAGTTCTAGCACCAAATGGCATTTAACCCACTCAATTGGTAACGATTGTTTGCCTTTTTCCGCAAGAAAATTCCATGTATTCCCATGATTCCAACGCCCTATATATATACTTGGAATTGCTCTGTTTTCTGCACAGCCAAGCCAGGTGAAACAAGAACCAAGAAGAACAAAAAGCTTTCATCTCCTTATTCTTCCCTCGAAAATGGGGTTGAAGTGGATTCTGAATTCCGCTTTCACTCAAGTTCTAGGGCTGACAGAGAAGCAACATCGCAATCAGAACGAGGCGGGAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATGGAGGTTTGAATTTTGAAAGTGGGTTTCAAATGCCTCTCCATTATCCCAGGTACACGAAGGCGGATTATGAGAAAATGGAAGAAGGTAAATTGGATTTGCTTCTCAAACAATATGGACTCCGTTTTGAAGGTACCCTTGAGGAGAAAAGGGCATTCGCTATTGGCACGTTCTTGTGGCCTGACCAACTTTGA

mRNA sequence

ATGTGCACCATTGAATTGAAGTCGCCAAGCCAGGTGAAACAAGAACCAAGAAGAACAAAAAGCTTTCATCTCCTTATTCTTCCCTCGAAAATGGGGTTGAAGTGGATTCTGAATTCCGCTTTCACTCAAGTTCTAGGGCTGACAGAGAAGCAACATCGCAATCAGAACGAGGCGGGAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATGGAGGTTTGAATTTTGAAAGTGGGTTTCAAATGCCTCTCCATTATCCCAGGTACACGAAGGCGGATTATGAGAAAATGGAAGAAGGTAAATTGGATTTGCTTCTCAAACAATATGGACTCCGTTTTGAAGGTACCCTTGAGGAGAAAAGGGCATTCGCTATTGGCACGTTCTTGTGGCCTGACCAACTTTGA

Coding sequence (CDS)

ATGTGCACCATTGAATTGAAGTCGCCAAGCCAGGTGAAACAAGAACCAAGAAGAACAAAAAGCTTTCATCTCCTTATTCTTCCCTCGAAAATGGGGTTGAAGTGGATTCTGAATTCCGCTTTCACTCAAGTTCTAGGGCTGACAGAGAAGCAACATCGCAATCAGAACGAGGCGGGAGAAGGAATCAAGAACGTGGAGCAAGTGAAGGAGGCGGAAGATTGTTTTTATGGAGGTTTGAATTTTGAAAGTGGGTTTCAAATGCCTCTCCATTATCCCAGGTACACGAAGGCGGATTATGAGAAAATGGAAGAAGGTAAATTGGATTTGCTTCTCAAACAATATGGACTCCGTTTTGAAGGTACCCTTGAGGAGAAAAGGGCATTCGCTATTGGCACGTTCTTGTGGCCTGACCAACTTTGA

Protein sequence

MCTIELKSPSQVKQEPRRTKSFHLLILPSKMGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLHYPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL
Homology
[Close]
BLAST of CmaCh16G009700 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-24
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 31  MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 90
           M +K +  SAFTQ+ G +    +  N      K ++ +K+ E        F SGFQ+PLH
Sbjct: 1   MEMKLLFTSAFTQMFGYSNHMDQASNCQSTRNKIIKMMKKEE--------FPSGFQVPLH 60

Query: 91  YPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQL 140
           YP+Y+K+DYE M++ +LDLLLKQYG  FEG+LE+KR FAI +FLWPDQL
Sbjct: 61  YPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]
BLAST of CmaCh16G009700 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-17
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 83  SGFQMPLHYPRYTKADYEKMEEGKLDLLLKQYGLR--FEGTLEEKRAFAIGTFLWP 137
           SGF+MPLHYPRYTK DYE+MEE +LDLLL +YGL    + TL EKRAFAI TF+WP
Sbjct: 34  SGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]
BLAST of CmaCh16G009700 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 5.3e-16
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 0 

Query: 31  MGLKWILNSAFTQVLGLTEKQHRNQNEAGEGIKNVEQVKEAEDCFYGGLNFESGFQMPLH 90
           MG+K+    + T +       H   ++ GE  +N    K   D      N  S FQ+PLH
Sbjct: 1   MGIKFSQGPSNTTI-------HNRSHQDGEDQRNETATKINHD---KPQNQSSSFQIPLH 60

Query: 91  YPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLWPDQ 139
           YP+YTK+DYEKM E +LD LL++YGL   G   EKR FAIG FLW  +
Sbjct: 61  YPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]
BLAST of CmaCh16G009700 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-13
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 83  SGFQMPLHYPRYTKADYEKMEEGKLDLLLKQYGLRFEGTLEEKRAFAIGTFLW 136
           S F+MPLHYPRY+K DY+ M E KLD +L  YGL   G L  KR FAIG FLW
Sbjct: 30  SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]
BLAST of CmaCh16G009700 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 78  GLNFESGFQMPLHYPRYTKADYEKMEEGKLDLLLKQYGLRFE-GTLEEKRAFAIGTFLW 136
           G +  S FQMPL YP Y K  Y+ M E +LD LLK YGL  + G L  K+ FA+G FLW
Sbjct: 50  GSSSPSSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:
BLAST of CmaCh16G009700 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh16G009700 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55620.14.1e-2449.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G09950.12.2e-1771.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41761.15.3e-1642.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G55570.17.2e-1362.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G11405.13.3e-1052.54unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513OS06G0523300 PROTEINcoord: 31..139
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 31..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009700.1CmaCh16G009700.1mRNA