Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAGACTCAGCGATGAATCTGTCTCGCCCTCTTTGGGCTCCCACGCGGCTGCTTTGCTTCATCAGAACTGCAACGTACTCCTCCGCCGCTGTTACTGCTCCGGCCACCGCCTCAAACTCTAGCTTTCCCCTCAAGAATGTGACCAAGTCGAACTTTGAAGCTGTGCTATCGGAACTTCGGAGCCATGTCCGAGCTGCGGACTTCGTTGCCATCGACCTTGAAATGACCGGCATCACTAGCGCGCCTTGGCGCGAATCGTTCGAGTTTGATCGCTTTGATGTTCGCTACCTCAAGGTCAAGGACTCTGCTGAGAAGTTTGCCGTTGTTCAATTCGGCGTCTGCCCGTTCCGTTGGGACTCTGCCAAGAACTCATTCGTCGCTCATCCGTAATTTCTTTTCTTCTTCGTTGGATTTGGATTTCATTTGGTTACTGCGAAATTTCGTGTGAACCAGGCAGTATAGCCAGCTTACCGTGATGGAGAGATGGTTTCTTTTGTGGAATTTGACATTGTCTCGTTGTTTGAGTTGCAGGCATAACTTTTTTGTTTTCCCGCGCCATGAAATCCAAGTCGATGGCCCTTCTTCCGAGTTCCTCTGTCAGACTACCTCCATCGAATTCTTGGCTAAATACCAGTTTGATTTCAACGCTTGTATACATGAAGGTAGTTTTGTTTTCATGTTTCTCCTTCAATTTATGGACATAAAATTTATCTTCAGGATACAGAGACTGCGTCGAATTCATTTTATACGGTTATTCAGTCAGATTTGACAAGCATAATTGTAAACTTTTAGTCATTTCATTGATTGACTCTTTTGGTCCTCTCGGATTTTGAGAATTTGAATTGTAATTAATCTCAGGAATATCTTATTTGTCCAGAGCACATGAAGATGCGGCACGCAAACGCCTGAATTTTGCACATGGGGACGAAACGTTAGATGCATCTTCTAATGTGACTAATATTCGGAATCAGAAGAGGATCGGCATTGCTGATGTTTTATTCAAGGAAAGAATGAAAAACAGATTACATGAATGGCGGGACAGATTACTATCTGAAAGAAACATGGAGTGTCAAGGCCAGGAAGGCGCAAATGATTACCAACGACAATTTGAAACCATTTTCTTCAAGATGCGCCCCGCTCTTACTTTGAGCGATTTCACCTCTCATCAGACAAAATTGATTCAGCTGGTGAGATAGATTTTCATTTGCATATTTTACATCAATTTTAAACTTAAATGCACAAGTTTGTTTGCTTGCTTTATACGGAGCATGAAACATAATGGGAATTAGAGTACAGGGAAATATGATTTTATTATTCTAAGAAGATGCCATTTTCTGAAGTTGCTAGAGGCTTTGTTCTTGTTTCTTTTGTTTGTTCTGTGAAGAAACTATCTGTGGCATAAAATAATTTTCTGATGCAATATTTGCCTACTTTCTCATCAAGTATGTCTATGCTTGGCTGCGTGTTAGTTAACTTAACTGTCTGAATATTAATCATGCAATGTCGTTTGTTTGGGATAACATGATCTTATTTCATTTGAAATGTTGATCATGTGGAGGTGAACACATGCAGGTCATTAAGAAGCATTTTGAAGATCTTTGTTTCGTTGTCGTGGATGATGGCAATGCCAATCTACAACAATTAGTCGTGTACGTGGATTCTAGGGACGATAAAGAGCTGCTCATGGTTAGACACTTTCCTTTTGTGCTCACAAAACCTTGACTACAAACTAGCAACTGAAAAAGTCGAAATGAAGACAAATATCTTGACTTGGTTACTTTTATTTCGAACTTTTCAATTTACGTTTAAATCTGTGCTTATTAGATGTTTTAGTTCGTAAAACTAAGCGCTGAAAGTGGTAATCTTTCTGAAATTCGTTGTGAAAATCTATATGTTGTTGTGTATTGGATCAGCAGTAATGGAAAACAGTACATGAGGCCTTATTCTTGCTTATCACTTCATGCTTTTGGGAGAGAGATATGGAAGTAAAAATGCATTTACAAAGTTACAGCCCCGAATTGCTTATAATGAATTGTCATATTAATGCAGCAAGAGGTCAACTGCGATCGGCAGGAAGCAGCTGAAATGAAGATCCAATCAGCAATTGGGTTTCGTCATGTTATCGATCTCCTTTCATCGGAAAAGAAGTTGATTATCGGTCATAATTGCTTCCTCGGTAAGGCATTCAGCCTTAGTTTCATAGACAATAATTGTTAACAATTCTATTTTCAGCTGACACAACTGTTTTCTGTACCAGATATTGCCCACATACACAAAAAGTTTATAGGTTCTCTTCCTTTAACGGCTGAAGAATTTGTCTCTTCTATTGGAAAGCGCTTTCCATTAATCATGGACACCAAAATTCTATTAAACGGAAATGGCATTCTTCAGCAACGGATGAAGAAGTCCAGCACATCTCTATCCTCTGCATTTGCCTTATTATGCCCGCATATTGCCTTTAGCTCTCAGAGCAATCCTGCCTTCAACTCTGGTGTGCAAGTGGAGGTTCAAGTAGACGATCTAAGGTACGTTTTCCTCGGCATATTTGGACGGCTAGGATTTTCTATATCGTATGCTGAATATAAGTTTCTATTCGTTATCCAAATTTTCTATATCGAGTGCTACCAATAGAAAACTTATGGGTGAAATTGTTGAATTTCTCATCATTTTTGTATAAATACAAGTGCACGTGTGTGTCGATTTAGCATTGATGTTTTGATCACTAGTGTTGTATTCTTGATCCTGGCAGTACTTAGGATTTGAAGGTACTTAATTGATTAAAATTAAGTAAAATCTAACTGCATCTATGTTTTAATTTCAACCTCTATGCAGTTCCTCCAACTGGAATTCTGGAGATAAGCATGAAGCTGGGTACGATGCTTTTATGACAGGATGTGTATTTGCACAAGCGTGCAATCTTATGGGAATTGATTTTGTTCTTCCTTCTGAAAATTTGGCTGACAATGAGAAATTGCAGAAGCACATAAACCATCTGTATTTGAGTTGGGCCAGTGGCGATATTATCGATCTGAGCACCGGTAATCGAATGACCGAGCCTTTGAGGTCTAATAGATCTAAAAGGCATCAAGTAAAAATATCGTTCGAGAACATTGTTCTAATATGGGGATTTCCTGCCAACCTTAATGCAAGGAAAATCAAAGAGTGCATCTCTAAAGTGTTCGGCCTGGCAAATATCGTTAGTGTCTACCATATAGATGAAAGTGCTGTGTTTGTGCAGTTTGCAAAGCCAGAAATGGTTTCCGAATTTCTCGACCTAAAGGAAAACTTGGAGCGGCACGATGATCCAATATCAGTTTTGCATCCTCTCACTGAGCTTTTTGGAGCTAAAAGTACTCACGCTGCAGGCTATGAAGCATACAAGGAAATTTGCAGCTCTCCCATGTTTAAAGTCTTGTTTGCTGATCAGGCAGAGGCAGTTGGGATTAATCAGAAGACGATGTCGATAAAACTCAAGTCAGTAAAGGGCCAGATGCATGAAGCTGCCAACAGCAGTTTAACTGCTGATATGTTGAAGGAAACTACTGAAGTACAGGGGATGGAAGTGGGAGCAAATGATCTTAGAAACACTAACTACCATATTTTACGATCTTCTTCGATGTAA
mRNA sequence
GTAAGACTCAGCGATGAATCTGTCTCGCCCTCTTTGGGCTCCCACGCGGCTGCTTTGCTTCATCAGAACTGCAACGTACTCCTCCGCCGCTGTTACTGCTCCGGCCACCGCCTCAAACTCTAGCTTTCCCCTCAAGAATGTGACCAAGTCGAACTTTGAAGCTGTGCTATCGGAACTTCGGAGCCATGTCCGAGCTGCGGACTTCGTTGCCATCGACCTTGAAATGACCGGCATCACTAGCGCGCCTTGGCGCGAATCGTTCGAGTTTGATCGCTTTGATGTTCGCTACCTCAAGGTCAAGGACTCTGCTGAGAAGTTTGCCGTTGTTCAATTCGGCGTCTGCCCGTTCCGTTGGGACTCTGCCAAGAACTCATTCGTCGCTCATCCGCATAACTTTTTTGTTTTCCCGCGCCATGAAATCCAAGTCGATGGCCCTTCTTCCGAGTTCCTCTGTCAGACTACCTCCATCGAATTCTTGGCTAAATACCAGTTTGATTTCAACGCTTGTATACATGAAGGAATATCTTATTTGTCCAGAGCACATGAAGATGCGGCACGCAAACGCCTGAATTTTGCACATGGGGACGAAACGTTAGATGCATCTTCTAATGTGACTAATATTCGGAATCAGAAGAGGATCGGCATTGCTGATGTTTTATTCAAGGAAAGAATGAAAAACAGATTACATGAATGGCGGGACAGATTACTATCTGAAAGAAACATGGAGTGTCAAGGCCAGGAAGGCGCAAATGATTACCAACGACAATTTGAAACCATTTTCTTCAAGATGCGCCCCGCTCTTACTTTGAGCGATTTCACCTCTCATCAGACAAAATTGATTCAGCTGGTCATTAAGAAGCATTTTGAAGATCTTTGTTTCGTTGTCGTGGATGATGGCAATGCCAATCTACAACAATTAGTCGTGTACGTGGATTCTAGGGACGATAAAGAGCTGCTCATGCAAGAGGTCAACTGCGATCGGCAGGAAGCAGCTGAAATGAAGATCCAATCAGCAATTGGGTTTCGTCATGTTATCGATCTCCTTTCATCGGAAAAGAAGTTGATTATCGGTCATAATTGCTTCCTCGATATTGCCCACATACACAAAAAGTTTATAGGTTCTCTTCCTTTAACGGCTGAAGAATTTGTCTCTTCTATTGGAAAGCGCTTTCCATTAATCATGGACACCAAAATTCTATTAAACGGAAATGGCATTCTTCAGCAACGGATGAAGAAGTCCAGCACATCTCTATCCTCTGCATTTGCCTTATTATGCCCGCATATTGCCTTTAGCTCTCAGAGCAATCCTGCCTTCAACTCTGGTGTGCAAGTGGAGGTTCAAGTAGACGATCTAAGTTCCTCCAACTGGAATTCTGGAGATAAGCATGAAGCTGGGTACGATGCTTTTATGACAGGATGTGTATTTGCACAAGCGTGCAATCTTATGGGAATTGATTTTGTTCTTCCTTCTGAAAATTTGGCTGACAATGAGAAATTGCAGAAGCACATAAACCATCTGTATTTGAGTTGGGCCAGTGGCGATATTATCGATCTGAGCACCGGTAATCGAATGACCGAGCCTTTGAGGTCTAATAGATCTAAAAGGCATCAAGTAAAAATATCGTTCGAGAACATTGTTCTAATATGGGGATTTCCTGCCAACCTTAATGCAAGGAAAATCAAAGAGTGCATCTCTAAAGTGTTCGGCCTGGCAAATATCGTTAGTGTCTACCATATAGATGAAAGTGCTGTGTTTGTGCAGTTTGCAAAGCCAGAAATGGTTTCCGAATTTCTCGACCTAAAGGAAAACTTGGAGCGGCACGATGATCCAATATCAGTTTTGCATCCTCTCACTGAGCTTTTTGGAGCTAAAAGTACTCACGCTGCAGGCTATGAAGCATACAAGGAAATTTGCAGCTCTCCCATGTTTAAAGTCTTGTTTGCTGATCAGGCAGAGGCAGTTGGGATTAATCAGAAGACGATGTCGATAAAACTCAAGTCAGTAAAGGGCCAGATGCATGAAGCTGCCAACAGCAGTTTAACTGCTGATATGTTGAAGGAAACTACTGAAGTACAGGGGATGGAAGTGGGAGCAAATGATCTTAGAAACACTAACTACCATATTTTACGATCTTCTTCGATGTAA
Coding sequence (CDS)
ATGAATCTGTCTCGCCCTCTTTGGGCTCCCACGCGGCTGCTTTGCTTCATCAGAACTGCAACGTACTCCTCCGCCGCTGTTACTGCTCCGGCCACCGCCTCAAACTCTAGCTTTCCCCTCAAGAATGTGACCAAGTCGAACTTTGAAGCTGTGCTATCGGAACTTCGGAGCCATGTCCGAGCTGCGGACTTCGTTGCCATCGACCTTGAAATGACCGGCATCACTAGCGCGCCTTGGCGCGAATCGTTCGAGTTTGATCGCTTTGATGTTCGCTACCTCAAGGTCAAGGACTCTGCTGAGAAGTTTGCCGTTGTTCAATTCGGCGTCTGCCCGTTCCGTTGGGACTCTGCCAAGAACTCATTCGTCGCTCATCCGCATAACTTTTTTGTTTTCCCGCGCCATGAAATCCAAGTCGATGGCCCTTCTTCCGAGTTCCTCTGTCAGACTACCTCCATCGAATTCTTGGCTAAATACCAGTTTGATTTCAACGCTTGTATACATGAAGGAATATCTTATTTGTCCAGAGCACATGAAGATGCGGCACGCAAACGCCTGAATTTTGCACATGGGGACGAAACGTTAGATGCATCTTCTAATGTGACTAATATTCGGAATCAGAAGAGGATCGGCATTGCTGATGTTTTATTCAAGGAAAGAATGAAAAACAGATTACATGAATGGCGGGACAGATTACTATCTGAAAGAAACATGGAGTGTCAAGGCCAGGAAGGCGCAAATGATTACCAACGACAATTTGAAACCATTTTCTTCAAGATGCGCCCCGCTCTTACTTTGAGCGATTTCACCTCTCATCAGACAAAATTGATTCAGCTGGTCATTAAGAAGCATTTTGAAGATCTTTGTTTCGTTGTCGTGGATGATGGCAATGCCAATCTACAACAATTAGTCGTGTACGTGGATTCTAGGGACGATAAAGAGCTGCTCATGCAAGAGGTCAACTGCGATCGGCAGGAAGCAGCTGAAATGAAGATCCAATCAGCAATTGGGTTTCGTCATGTTATCGATCTCCTTTCATCGGAAAAGAAGTTGATTATCGGTCATAATTGCTTCCTCGATATTGCCCACATACACAAAAAGTTTATAGGTTCTCTTCCTTTAACGGCTGAAGAATTTGTCTCTTCTATTGGAAAGCGCTTTCCATTAATCATGGACACCAAAATTCTATTAAACGGAAATGGCATTCTTCAGCAACGGATGAAGAAGTCCAGCACATCTCTATCCTCTGCATTTGCCTTATTATGCCCGCATATTGCCTTTAGCTCTCAGAGCAATCCTGCCTTCAACTCTGGTGTGCAAGTGGAGGTTCAAGTAGACGATCTAAGTTCCTCCAACTGGAATTCTGGAGATAAGCATGAAGCTGGGTACGATGCTTTTATGACAGGATGTGTATTTGCACAAGCGTGCAATCTTATGGGAATTGATTTTGTTCTTCCTTCTGAAAATTTGGCTGACAATGAGAAATTGCAGAAGCACATAAACCATCTGTATTTGAGTTGGGCCAGTGGCGATATTATCGATCTGAGCACCGGTAATCGAATGACCGAGCCTTTGAGGTCTAATAGATCTAAAAGGCATCAAGTAAAAATATCGTTCGAGAACATTGTTCTAATATGGGGATTTCCTGCCAACCTTAATGCAAGGAAAATCAAAGAGTGCATCTCTAAAGTGTTCGGCCTGGCAAATATCGTTAGTGTCTACCATATAGATGAAAGTGCTGTGTTTGTGCAGTTTGCAAAGCCAGAAATGGTTTCCGAATTTCTCGACCTAAAGGAAAACTTGGAGCGGCACGATGATCCAATATCAGTTTTGCATCCTCTCACTGAGCTTTTTGGAGCTAAAAGTACTCACGCTGCAGGCTATGAAGCATACAAGGAAATTTGCAGCTCTCCCATGTTTAAAGTCTTGTTTGCTGATCAGGCAGAGGCAGTTGGGATTAATCAGAAGACGATGTCGATAAAACTCAAGTCAGTAAAGGGCCAGATGCATGAAGCTGCCAACAGCAGTTTAACTGCTGATATGTTGAAGGAAACTACTGAAGTACAGGGGATGGAAGTGGGAGCAAATGATCTTAGAAACACTAACTACCATATTTTACGATCTTCTTCGATGTAA
Protein sequence
MNLSRPLWAPTRLLCFIRTATYSSAAVTAPATASNSSFPLKNVTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSSEFLCQTTSIEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNIRNQKRIGIADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIFFKMRPALTLSDFTSHQTKLIQLVIKKHFEDLCFVVVDDGNANLQQLVVYVDSRDDKELLMQEVNCDRQEAAEMKIQSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEEFVSSIGKRFPLIMDTKILLNGNGILQQRMKKSSTSLSSAFALLCPHIAFSSQSNPAFNSGVQVEVQVDDLSSSNWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPSENLADNEKLQKHINHLYLSWASGDIIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWGFPANLNARKIKECISKVFGLANIVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDPISVLHPLTELFGAKSTHAAGYEAYKEICSSPMFKVLFADQAEAVGINQKTMSIKLKSVKGQMHEAANSSLTADMLKETTEVQGMEVGANDLRNTNYHILRSSSM
Homology
BLAST of CmaCh16G009590 vs. ExPASy Swiss-Prot
Match:
Q9LG26 (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 SV=2)
HSP 1 Score: 750.0 bits (1935), Expect = 2.5e-215
Identity = 378/650 (58.15%), Postives = 477/650 (73.38%), Query Frame = 0
Query: 10 PTRLLCFIRTATYSSAAVTAPATASNSSFPLKNVTKSNFEAVLSELRSHVRAADFVAIDL 69
P R L +++ + T+ A ++ ++FPLK+VT+SNFE L++LRS V+AADFVAIDL
Sbjct: 8 PLRSLVCSFSSSAAETVTTSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDL 67
Query: 70 EMTGITSAPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSAKNSFVAHPHNFF 129
EMTG+TSAPWR+S EFDR+DVRYLKVKDSAEKFAVVQFGVCPFRWDS SFV++PHNFF
Sbjct: 68 EMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFF 127
Query: 130 VFPRHEIQVDGPSSEFLCQTTSIEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAH 189
VFPR E+ D P+ EFLCQTTS++FLAKYQFDFN CIHEGISYLSR E+ A KRL H
Sbjct: 128 VFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLH 187
Query: 190 GDETLDASSNVTNIRNQKRIGIADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQ 249
G++ +D+S + K + +ADVLF RM+ L+EWR LL N + +N
Sbjct: 188 GEDGIDSSGETEEL---KLVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSN 247
Query: 250 RQFETIFFKMRPALTLSDFTSHQTKLIQLVIKKHFEDLCFVVVDDGNANLQQLVVYVDSR 309
+ ET+F MRPAL+L FTSHQ +++ V++KHF DL ++ +D +++ + +VVY DS
Sbjct: 248 QSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSD 307
Query: 310 DDKELLMQEVNCDRQEAAEMKIQSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIG 369
DKE LM+E +R+ AE KIQSAIGFR VIDLL+SEKKLI+GHNCFLDIAH++ KF+G
Sbjct: 308 SDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVG 367
Query: 370 SLPLTAEEFVSSIGKRFPLIMDTKILLNGNGILQQRMKKSSTSLSSAFALLCPHIAFSSQ 429
LP TAE+FV+SI FP I+DTKILLN N +L QRMKKSSTSLSSAF+ LCP I FSS+
Sbjct: 368 PLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSR 427
Query: 430 SNPAF-NSGVQVEVQVDDLSSSNWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPS-- 489
S+ +F V ++V++D++ SNWN+G KHEAGYDAFMTGC+FAQACN +G DF S
Sbjct: 428 SSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQL 487
Query: 490 ENLADNEKLQKHINHLYLSWASGDIIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWG 549
++ A NEKL+K+IN LYLSW GDIIDL TG+ SN K +ENIVLIW
Sbjct: 488 DDFAQNEKLEKYINRLYLSWTRGDIIDLRTGH-------SNADNWRVSKFKYENIVLIWN 547
Query: 550 FPANLNARKIKECISKVFGLANIVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDP 609
FP L AR IKECI K FG A++ SVYH+D+SAVFV F E+V +FL LK LE D P
Sbjct: 548 FPRKLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGP 607
Query: 610 ISVLHPLTELFGAKSTHAAGYEAYKEICSSPMFKVLFADQAEAVGINQKT 657
+SVLHPL+++ +T AA YEAYKEICSS + +V+F+DQAE VG+ +T
Sbjct: 608 VSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRT 647
BLAST of CmaCh16G009590 vs. ExPASy Swiss-Prot
Match:
Q8W4C3 (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g25430 PE=2 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 1.3e-57
Identity = 176/639 (27.54%), Postives = 297/639 (46.48%), Query Frame = 0
Query: 24 SAAVTAPATASNSSFPLKNVTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESF 83
SA T + + +K V KSNF L E+R+ + ++DF+A+ L+ TG +A W
Sbjct: 10 SATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVS 69
Query: 84 EFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSS 143
D YLK K +AE++ ++QF +CPF +K HP+NF +FPR E++ PS
Sbjct: 70 AIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSY 129
Query: 144 EFLCQTTSIEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNI 203
F CQ + + +A+ FDFN CI+EGISYLSRA E A++ F + L S V++
Sbjct: 130 SFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASK----FLSENPILADSVTVSS- 189
Query: 204 RNQKRIGIADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIF-----FK 263
+AD +F R+++R+ WR + + + G +D + +
Sbjct: 190 ---SPATVADTVFVGRIRSRVKNWRQSCI-----DSGSKTGDDDLVSSLRRLVLGSEQYG 249
Query: 264 MRPALTLSDFTSHQTKLIQLVIKKHFEDLCFVVVDDGNANLQQL-VVYVDSRDDKELLMQ 323
R LT+ + Q +LI ++ + +D+ ++V + Q + V++ S++DK+L +
Sbjct: 250 SRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKR 309
Query: 324 EVNCDRQEAAEMKIQSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEE 383
E+ D ++ +++ GFR V+D +SS +K ++ N D IH KF+G LP ++
Sbjct: 310 ELK-DLEKEENRRVR---GFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDD 369
Query: 384 FVSSIGKRFPLIMDTKILLNGNGILQ--QRMKKSSTSLSSAFALLCPHIAFSSQSNPAFN 443
F SS+ FP ++D + L + + +SL+ FA + +A N
Sbjct: 370 FSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVA---------N 429
Query: 444 SGVQVEVQVDDLSSSNWNSGDKHEA-GYDAFMTGCVFAQACNLMGIDFVLPSENLADNEK 503
G V++ + H++ G +A M +FA+ C + D + NE
Sbjct: 430 QGCPVKLD------------EGHQSHGQNAVMISQLFAKLCTIQKSDL----STIQSNED 489
Query: 504 LQKHINHLYLSWASGDIIDLSTGNRMTEPLR--SNRSKRHQVKISFENIVLIWGFPANLN 563
Q S + + + N E ++ S S+R +S EN+V IWG +
Sbjct: 490 FQ-----ALASDEHANSVTSCSKNAGDENVKVWSKNSRR----VSSENLVFIWGLGKKMT 549
Query: 564 ARKIKECISKVFGL-ANIVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDPISVLH 623
A K+K + K + A V +ID S+ + F + FL N E+ D + +
Sbjct: 550 AAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLREM- 585
Query: 624 PLTELFGAKSTHAAGYEAYKEICSSPMFKVLFADQAEAV 651
A+ AGYE YK C ++ AD AE++
Sbjct: 610 ------VAEGLRGAGYETYKRACRLGFWE---ADLAESL 585
BLAST of CmaCh16G009590 vs. ExPASy Swiss-Prot
Match:
Q90ZA1 (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 5.3e-40
Identity = 147/560 (26.25%), Postives = 249/560 (44.46%), Query Frame = 0
Query: 43 VTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESFE--FDRFDVRYLKVKDSAE 102
+T+SNF+ L ++ + ADF+AID E +GI+ P + FD + RY K+K +
Sbjct: 3 ITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHSM 62
Query: 103 KFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSSEFLCQTTSIEFLAKYQF 162
+F + QFG+C F +D+ + ++ NF++FP+ + P +F+CQ++SI+FLA F
Sbjct: 63 EFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQGF 122
Query: 163 DFNACIHEGISYLSRAHE----DAARKRLNFAHGDETLDASSNVTNIRNQKRIGIADVL- 222
DFN GI YL++ E D R + ++G T+ S ++ ++ + I D
Sbjct: 123 DFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTM---SYISPNSSKTPVSIPDEQK 182
Query: 223 -FKERMKNRLHEWRDRLLSERNME-CQGQEGANDYQRQ--FETIFFKMRPALTLSDFTSH 282
F +++ R+ ++ N+E C G YQR+ ++T+ +K + + S
Sbjct: 183 GFIDKVVERVEDFLKNEQKSMNVEPCTG------YQRKLIYQTLNWKYPRGIHVETVES- 242
Query: 283 QTKLIQLVIKKHFEDLCFVVVDDGNANLQQLVVYVDSRDDKELLMQEVNCDRQEAAEMKI 342
+ K +VI K VD + K + Q+ +R+E +
Sbjct: 243 EKKERYIVISK-----------------------VDEEERKRMEQQKQAKEREE-----L 302
Query: 343 QSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEEFVSSIGKRFPLIMD 402
A+GF +I +SS KL++GHN LD+ H +F LP EF FP ++D
Sbjct: 303 DDAVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLD 362
Query: 403 TKILLNGNGILQQRMKKSSTSLSSAFALLCPHIAFSSQSNPAFNSGVQVEVQVDDLSSSN 462
TK++ + N +++ A L + + P +S + S N
Sbjct: 363 TKLMASTNPF-------KEIIYNTSLAELEKRLKEAPFKPPKVDS-------AEGFQSYN 422
Query: 463 WNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPSENLADNEKL-QKHINHLYLSWASGD 522
S HEAGYDA++TG F N +G P + ++ K+ + N L+L D
Sbjct: 423 TASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKDYVSCRSKIVRPFFNKLFLMRIM-D 482
Query: 523 IIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWGFPANLNARKIKECISKVFGLANIV 582
I L+ +P R N VL FP + + +F +
Sbjct: 483 IPYLNLEGPDLQPKRDN--------------VLHVTFPKEWKTSDLYQ----LFSAFGNI 490
Query: 583 SVYHIDESAVFVQFAKPEMV 591
V ID+++ FV ++PE V
Sbjct: 543 QVSWIDDTSAFVSLSQPEQV 490
BLAST of CmaCh16G009590 vs. ExPASy Swiss-Prot
Match:
Q7ZU92 (Poly(A)-specific ribonuclease PARN OS=Danio rerio OX=7955 GN=parn PE=1 SV=2)
HSP 1 Score: 166.8 bits (421), Expect = 9.0e-40
Identity = 132/501 (26.35%), Postives = 222/501 (44.31%), Query Frame = 0
Query: 43 VTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESFE--FDRFDVRYLKVKDSAE 102
VT+ NF+ VL E+ + V+ ADF++ID E TGI+ P + D + RY K++ +
Sbjct: 3 VTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHSM 62
Query: 103 KFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSSEFLCQTTSIEFLAKYQF 162
F + QFGVC FR+D +++++ NF++FP+ P +F+CQ++SI+FLA F
Sbjct: 63 NFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQGF 122
Query: 163 DFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNIRNQKRIGIADVLFKERM 222
DFN GI YL++ E R++ G + + G+ +V +R
Sbjct: 123 DFNKVFRSGIPYLNQEEECQLREQYEERRGQMN---GAGPVSYTPPSGTGVCNVPEDQR- 182
Query: 223 KNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIFFKMRPALTLSDFTSHQTKLIQLVI 282
E + + E + L L T Q KLI +
Sbjct: 183 ----------------------EFIRSVEEKVEALLKNTDQTLDLEPCTGFQRKLIYQTL 242
Query: 283 KKHFEDLCFVVVDDGNANLQQLVVYVDSRDDKELLMQEVNCDRQEAAEMKIQSAIGFRHV 342
+ + V+ ++ + + DD+E +E +Q+ + ++ A+GF V
Sbjct: 243 NSKYSK--GLHVEALETEKKERFIQISKVDDEERRRREQ--QKQQREQEELNDAVGFSRV 302
Query: 343 IDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEEFVSSIGKRFPLIMDTKILLNGNG 402
I +S KL++GHN LD+ H +F G LP ++F FP ++DTK++ +
Sbjct: 303 IRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTKLMAS--- 362
Query: 403 ILQQRMKK--SSTSLSSAFALLCPHIAFSSQSNPAFNSGVQVEVQVDDLSSSNWNSGDKH 462
Q K+ +TSL+ L + P + + L S + ++ H
Sbjct: 363 --TQPFKEIIHNTSLAELHKQL--------RQKPFRPPTTECP---EGLQSYDTSTEQLH 422
Query: 463 EAGYDAFMTGCVFAQACNLMGIDFVLPSENLADNEK-LQKHINHLYLSWASGDIIDLSTG 522
EAGYDAF+TG F N +G P +++ K L+ N L+L +ID+
Sbjct: 423 EAGYDAFITGLCFISMANYLGSFLTPPKSHISARSKLLEPFYNKLFLM----RVIDIPYL 450
Query: 523 NRMTEPLRSNRSKRHQVKISF 539
N L+ R H + ++F
Sbjct: 483 NMSGPDLQPKRD--HVLYVTF 450
BLAST of CmaCh16G009590 vs. ExPASy Swiss-Prot
Match:
P69341 (Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2)
HSP 1 Score: 158.7 bits (400), Expect = 2.5e-37
Identity = 137/562 (24.38%), Postives = 241/562 (42.88%), Query Frame = 0
Query: 43 VTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESFE--FDRFDVRYLKVKDSAE 102
+ +SNF++ L ++ + ADF AID E +GI+ P + FD + RY K+K +
Sbjct: 3 IIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSM 62
Query: 103 KFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSSEFLCQTTSIEFLAKYQF 162
F + QFG+C F++D + ++ NF+VFP+ P +F+CQ++SI+FLA F
Sbjct: 63 DFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGF 122
Query: 163 DFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNIRNQKRIGIADVLFKERM 222
DFN GI YL++ E R++ + + + T+ K V +
Sbjct: 123 DFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSK----CPVTIPDDQ 182
Query: 223 KNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIFFKMRPALTLSDFTSHQTKLIQLVI 282
K ++ D+++ + Q +E N L L T Q KLI +
Sbjct: 183 K----KFIDQVVEKIEDLLQSEENKN----------------LDLEPCTGFQRKLIYQTL 242
Query: 283 KKHFEDLCFVVVDDGNANLQQLVVYVDSRDDKELLMQEVNCDRQEAAEMKIQSAIGFRHV 342
+ V + + +V+ ++++ Q+ + QE ++ A+GF V
Sbjct: 243 SWKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQE----ELNDAVGFSRV 302
Query: 343 IDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEEFVSSIGKRFPLIMDTKI------ 402
I +++ KL+IGHN LD+ H +F LP EF FP ++DTK+
Sbjct: 303 IHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQP 362
Query: 403 ---LLNGNGI--LQQRMKKSSTSLSSAFALLCPHIAFSSQSNPAFNSGVQVEVQVDDLSS 462
++N + L++R+K++ + P S++ P++++
Sbjct: 363 FKDIINNTSLAELEKRLKETPFN---------PPKVESAEGFPSYDTA------------ 422
Query: 463 SNWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPSENLADNEKL-QKHINHLYLSWAS 522
S HEAGYDA++TG F N +G P +++ KL + N L+L
Sbjct: 423 ----SEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFNKLFLM--- 482
Query: 523 GDIIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWGFPANLNARKIKECISKVFGLAN 582
++D+ N L+ R VL FP + + +F
Sbjct: 483 -RVMDIPYLNLEGPDLQPKRDH-----------VLHVTFPKEWKTSDLYQ----LFSAFG 491
Query: 583 IVSVYHIDESAVFVQFAKPEMV 591
+ + ID+++ FV ++PE V
Sbjct: 543 NIQISWIDDTSAFVSLSQPEQV 491
BLAST of CmaCh16G009590 vs. TAIR 10
Match:
AT1G55870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 750.0 bits (1935), Expect = 1.8e-216
Identity = 378/650 (58.15%), Postives = 477/650 (73.38%), Query Frame = 0
Query: 10 PTRLLCFIRTATYSSAAVTAPATASNSSFPLKNVTKSNFEAVLSELRSHVRAADFVAIDL 69
P R L +++ + T+ A ++ ++FPLK+VT+SNFE L++LRS V+AADFVAIDL
Sbjct: 8 PLRSLVCSFSSSAAETVTTSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDL 67
Query: 70 EMTGITSAPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSAKNSFVAHPHNFF 129
EMTG+TSAPWR+S EFDR+DVRYLKVKDSAEKFAVVQFGVCPFRWDS SFV++PHNFF
Sbjct: 68 EMTGVTSAPWRDSLEFDRYDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFF 127
Query: 130 VFPRHEIQVDGPSSEFLCQTTSIEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAH 189
VFPR E+ D P+ EFLCQTTS++FLAKYQFDFN CIHEGISYLSR E+ A KRL H
Sbjct: 128 VFPRQELTFDPPAHEFLCQTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLH 187
Query: 190 GDETLDASSNVTNIRNQKRIGIADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQ 249
G++ +D+S + K + +ADVLF RM+ L+EWR LL N + +N
Sbjct: 188 GEDGIDSSGETEEL---KLVRLADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSN 247
Query: 250 RQFETIFFKMRPALTLSDFTSHQTKLIQLVIKKHFEDLCFVVVDDGNANLQQLVVYVDSR 309
+ ET+F MRPAL+L FTSHQ +++ V++KHF DL ++ +D +++ + +VVY DS
Sbjct: 248 QSMETVFHHMRPALSLKGFTSHQLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSD 307
Query: 310 DDKELLMQEVNCDRQEAAEMKIQSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIG 369
DKE LM+E +R+ AE KIQSAIGFR VIDLL+SEKKLI+GHNCFLDIAH++ KF+G
Sbjct: 308 SDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVG 367
Query: 370 SLPLTAEEFVSSIGKRFPLIMDTKILLNGNGILQQRMKKSSTSLSSAFALLCPHIAFSSQ 429
LP TAE+FV+SI FP I+DTKILLN N +L QRMKKSSTSLSSAF+ LCP I FSS+
Sbjct: 368 PLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSR 427
Query: 430 SNPAF-NSGVQVEVQVDDLSSSNWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPS-- 489
S+ +F V ++V++D++ SNWN+G KHEAGYDAFMTGC+FAQACN +G DF S
Sbjct: 428 SSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQL 487
Query: 490 ENLADNEKLQKHINHLYLSWASGDIIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWG 549
++ A NEKL+K+IN LYLSW GDIIDL TG+ SN K +ENIVLIW
Sbjct: 488 DDFAQNEKLEKYINRLYLSWTRGDIIDLRTGH-------SNADNWRVSKFKYENIVLIWN 547
Query: 550 FPANLNARKIKECISKVFGLANIVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDP 609
FP L AR IKECI K FG A++ SVYH+D+SAVFV F E+V +FL LK LE D P
Sbjct: 548 FPRKLKARGIKECICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGP 607
Query: 610 ISVLHPLTELFGAKSTHAAGYEAYKEICSSPMFKVLFADQAEAVGINQKT 657
+SVLHPL+++ +T AA YEAYKEICSS + +V+F+DQAE VG+ +T
Sbjct: 608 VSVLHPLSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRT 647
BLAST of CmaCh16G009590 vs. TAIR 10
Match:
AT1G55870.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 553.9 bits (1426), Expect = 1.9e-157
Identity = 283/508 (55.71%), Postives = 361/508 (71.06%), Query Frame = 0
Query: 152 IEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNIRNQKRIGI 211
++FLAKYQFDFN CIHEGISYLSR E+ A KRL HG++ +D+S + K + +
Sbjct: 1 MDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEEL---KLVRL 60
Query: 212 ADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIFFKMRPALTLSDFTSH 271
ADVLF RM+ L+EWR LL N + +N + ET+F MRPAL+L FTSH
Sbjct: 61 ADVLFAARMEKLLNEWRSGLLHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 120
Query: 272 QTKLIQLVIKKHFEDLCFVVVDDGNANLQQLVVYVDSRDDKELLMQEVNCDRQEAAEMKI 331
Q +++ V++KHF DL ++ +D +++ + +VVY DS DKE LM+E +R+ AE KI
Sbjct: 121 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDIVVYTDSDSDKENLMKEAKDERKRLAERKI 180
Query: 332 QSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEEFVSSIGKRFPLIMD 391
QSAIGFR VIDLL+SEKKLI+GHNCFLDIAH++ KF+G LP TAE+FV+SI FP I+D
Sbjct: 181 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 240
Query: 392 TKILLNGNGILQQRMKKSSTSLSSAFALLCPHIAFSSQSNPAF-NSGVQVEVQVDDLSSS 451
TKILLN N +L QRMKKSSTSLSSAF+ LCP I FSS+S+ +F V ++V++D++ S
Sbjct: 241 TKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 300
Query: 452 NWNSGDKHEAGYDAFMTGCVFAQACNLMGIDFVLPS--ENLADNEKLQKHINHLYLSWAS 511
NWN+G KHEAGYDAFMTGC+FAQACN +G DF S ++ A NEKL+K+IN LYLSW
Sbjct: 301 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTR 360
Query: 512 GDIIDLSTGNRMTEPLRSNRSKRHQVKISFENIVLIWGFPANLNARKIKECISKVFGLAN 571
GDIIDL TG+ SN K +ENIVLIW FP L AR IKECI K FG A+
Sbjct: 361 GDIIDLRTGH-------SNADNWRVSKFKYENIVLIWNFPRKLKARGIKECICKAFGSAS 420
Query: 572 IVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDPISVLHPLTELFGAKSTHAAGYE 631
+ SVYH+D+SAVFV F E+V +FL LK LE D P+SVLHPL+++ +T AA YE
Sbjct: 421 VTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAADYE 480
Query: 632 AYKEICSSPMFKVLFADQAEAVGINQKT 657
AYKEICSS + +V+F+DQAE VG+ +T
Sbjct: 481 AYKEICSSHVSEVMFSDQAETVGVKSRT 498
BLAST of CmaCh16G009590 vs. TAIR 10
Match:
AT3G25430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 226.1 bits (575), Expect = 8.9e-59
Identity = 176/639 (27.54%), Postives = 297/639 (46.48%), Query Frame = 0
Query: 24 SAAVTAPATASNSSFPLKNVTKSNFEAVLSELRSHVRAADFVAIDLEMTGITSAPWRESF 83
SA T + + +K V KSNF L E+R+ + ++DF+A+ L+ TG +A W
Sbjct: 10 SATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVS 69
Query: 84 EFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSAKNSFVAHPHNFFVFPRHEIQVDGPSS 143
D YLK K +AE++ ++QF +CPF +K HP+NF +FPR E++ PS
Sbjct: 70 AIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSK--LTVHPYNFHLFPRDELKCGMPSY 129
Query: 144 EFLCQTTSIEFLAKYQFDFNACIHEGISYLSRAHEDAARKRLNFAHGDETLDASSNVTNI 203
F CQ + + +A+ FDFN CI+EGISYLSRA E A++ F + L S V++
Sbjct: 130 SFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASK----FLSENPILADSVTVSS- 189
Query: 204 RNQKRIGIADVLFKERMKNRLHEWRDRLLSERNMECQGQEGANDYQRQFETIF-----FK 263
+AD +F R+++R+ WR + + + G +D + +
Sbjct: 190 ---SPATVADTVFVGRIRSRVKNWRQSCI-----DSGSKTGDDDLVSSLRRLVLGSEQYG 249
Query: 264 MRPALTLSDFTSHQTKLIQLVIKKHFEDLCFVVVDDGNANLQQL-VVYVDSRDDKELLMQ 323
R LT+ + Q +LI ++ + +D+ ++V + Q + V++ S++DK+L +
Sbjct: 250 SRLCLTIDVCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKR 309
Query: 324 EVNCDRQEAAEMKIQSAIGFRHVIDLLSSEKKLIIGHNCFLDIAHIHKKFIGSLPLTAEE 383
E+ D ++ +++ GFR V+D +SS +K ++ N D IH KF+G LP ++
Sbjct: 310 ELK-DLEKEENRRVR---GFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDD 369
Query: 384 FVSSIGKRFPLIMDTKILLNGNGILQ--QRMKKSSTSLSSAFALLCPHIAFSSQSNPAFN 443
F SS+ FP ++D + L + + +SL+ FA + +A N
Sbjct: 370 FSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVA---------N 429
Query: 444 SGVQVEVQVDDLSSSNWNSGDKHEA-GYDAFMTGCVFAQACNLMGIDFVLPSENLADNEK 503
G V++ + H++ G +A M +FA+ C + D + NE
Sbjct: 430 QGCPVKLD------------EGHQSHGQNAVMISQLFAKLCTIQKSDL----STIQSNED 489
Query: 504 LQKHINHLYLSWASGDIIDLSTGNRMTEPLR--SNRSKRHQVKISFENIVLIWGFPANLN 563
Q S + + + N E ++ S S+R +S EN+V IWG +
Sbjct: 490 FQ-----ALASDEHANSVTSCSKNAGDENVKVWSKNSRR----VSSENLVFIWGLGKKMT 549
Query: 564 ARKIKECISKVFGL-ANIVSVYHIDESAVFVQFAKPEMVSEFLDLKENLERHDDPISVLH 623
A K+K + K + A V +ID S+ + F + FL N E+ D + +
Sbjct: 550 AAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLREM- 585
Query: 624 PLTELFGAKSTHAAGYEAYKEICSSPMFKVLFADQAEAV 651
A+ AGYE YK C ++ AD AE++
Sbjct: 610 ------VAEGLRGAGYETYKRACRLGFWE---ADLAESL 585
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LG26 | 2.5e-215 | 58.15 | Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 ... | [more] |
Q8W4C3 | 1.3e-57 | 27.54 | Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g2... | [more] |
Q90ZA1 | 5.3e-40 | 26.25 | Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1 | [more] |
Q7ZU92 | 9.0e-40 | 26.35 | Poly(A)-specific ribonuclease PARN OS=Danio rerio OX=7955 GN=parn PE=1 SV=2 | [more] |
P69341 | 2.5e-37 | 24.38 | Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2 | [more] |
Match Name | E-value | Identity | Description | |
AT1G55870.1 | 1.8e-216 | 58.15 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT1G55870.2 | 1.9e-157 | 55.71 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT3G25430.1 | 8.9e-59 | 27.54 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |