CmaCh16G009470 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr16: 7308555 .. 7309202 (+)
RNA-Seq ExpressionCmaCh16G009470
SyntenyCmaCh16G009470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCGAAACGAAAGATTCTGGCGCCGCCACGCACATAGTCGAAATCCCAGCAGAGAATCAGAACATTATGATCTCTGTAATAGAACAACACCCATTGAGACAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTTTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGGATTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCCAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCAAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTAA

mRNA sequence

ATGGCGACCGAAACGAAAGATTCTGGCGCCGCCACGCACATAGTCGAAATCCCAGCAGAGAATCAGAACATTATGATCTCTGTAATAGAACAACACCCATTGAGACAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTTTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGGATTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCCAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCAAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTAA

Coding sequence (CDS)

ATGGCGACCGAAACGAAAGATTCTGGCGCCGCCACGCACATAGTCGAAATCCCAGCAGAGAATCAGAACATTATGATCTCTGTAATAGAACAACACCCATTGAGACAAATCTCCGAAAGCTCCGGCCATTTATTGCTTTTAAAGCTCTGGCAACGAGAGGAGCATCTGTTCGGCCTACGAATCGGGCGGCGAGAGACCAAACTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTTTTCCTGTTCCATGCCCTGTCTCTGACTCTCTTGTTCACTTCGTCCGATCCCAATGTGTGCCACAAATGGTGGGTTCCGGGAGTGGCAATGGGGGCGACGTCGGGCGTGTTTGTGATCGTGGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCATCAGCGCAGCTGCAAAGGGAGAAGAGTGAGAACAGAGCACTTACAAGGATTGTTCAAGAGCTGAGGATGAAAGGGTCGTGTTTTAATTTGTCCAAAGAGCCTCAAATTGGGCATAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCCTCTTACTTGGTTGTCAAGGAATTTCGTCACCATTTTTCTTCTGTGCTTTTCTGGCATTGTTTTTGGTGCTTCCAAGTTCATACTCTGTGGCCTTTAA

Protein sequence

MATETKDSGAATHIVEIPAENQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCGL
Homology
BLAST of CmaCh16G009470 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 228.0 bits (580), Expect = 7.1e-60
Identity = 121/236 (51.27%), Postives = 157/236 (66.53%), Query Frame = 0

Query: 5   TKDSGAATHIVEIPAENQNI-----------------MISVIEQHPLRQISESSGHLLLL 64
           TKDS    H+VEIP + ++                  ++ VI+QHPL +ISES GHLLLL
Sbjct: 4   TKDS----HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLLLL 63

Query: 65  KLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN------- 124
           KLWQREE LF  R+  +E++LES+K++IFQLCC+F +FH    TL+++SS  +       
Sbjct: 64  KLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVVKS 123

Query: 125 --VCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKG 184
             VC KWW+P     ATS V V +VQ KL+++WK    + RE+++NR LTR V ELRMKG
Sbjct: 124 NAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRMKG 183

Query: 185 SCFNLSKEPQIGHRMKSSSVEIKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 215
           S F+LSKEP  G RMKSSSVEIKW P+TW S+  +TI LLC +G+ F  SKFILCG
Sbjct: 184 SSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCG 235

BLAST of CmaCh16G009470 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-25
Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = 0

Query: 31  QHPLRQISESSGHLLLLKLWQREEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSL 90
           +HPL QI+++  H LLLK W +EE L   R+  +E++++S++++I QL  +FFLFH++SL
Sbjct: 17  RHPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISL 76

Query: 91  TLLF-------TSSDPNVCHKWWVPGVAMGATSGVFVIVVQLKLWLYWKASAQLQREKSE 150
            LLF       +S+  + C + W+P +    +S   +  V+ K  +       L+REK +
Sbjct: 77  LLLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKED 136

Query: 151 NRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVEIKWGPL-TWLSRNFVTIFLLCFSG 210
            + L + V+EL+ KG  F+L KE     R KS  VE K  P+  W +R+FVT+F    S 
Sbjct: 137 AKLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSC 196

Query: 211 IVFGASKFILC 214
           +V    + ILC
Sbjct: 197 LVLAMIRLILC 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G56120.17.1e-6051.27unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G12870.12.5e-2536.13unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
NoneNo IPR availablePANTHERPTHR33287:SF3OS03G0453550 PROTEINcoord: 1..214
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 1..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009470.1CmaCh16G009470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane