Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTCAAGTTTTCCAAATTCAAATTACTCAATTCGAAAACTATGTAAGTGTCTTTTTATTTTCATCTTTTCATCAATTTAATTACGAATTCGTTTCTTTTGCTGAGTTCTGTTCTTCTCATGAACTGTTCTTCATCACAGAGATTCAAAAAGAAAATTCGAGTTTGGTTTTTTTTTTTTCCTTTTTTTTTCTGTATAAATCTCCCAGATTTTGGTACTTTTTGCACTTTTTTTCAAGATTTTTGTAGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCGAAAGTTTGTATCTTTTTTTGTTTTTTTGAAAAATTTCTAAAGAATTCTATGTTTTTTTTGAAGATTTTTCTGGTTTAATCCAATTGTTATGATGTTTTTTCAAATGGGTTTTCGAAAGTTTGTTTCTTTTTTTGGTTTTTTTGAAAAATTTCTAAGGAATTCTATGTTTTTTTTGAAGATTTTTGTAGTTCAATCCGATTCTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTACTTCTTTTTTGGTTTTTTGAAAAATTTCTAAAGAATTCGATGTTTTTTTTCTAAAGATTTTTGTAGTTTAATCCAATTGTTGTTATGTTTTTTCAAATGGGTTTTCAAACGTTCGAATCTTTTTTTGTTTTTTTGAAAAATTTCTAAAGAATTCTATGAAGTTGAGACCAAACACCGAAGAACAAGCGATTTTTTTTTTGAAGAAATTAGTGTTTTTTCTTTGTTTAGAACAAATTATGGAATGTGATTACGATTTTTCCATCTTGGGTTCGATCCGTTTCTCTGGCATTCTTTCGTATTTAATTCGTTTTTATTTCATTGTAGTGTTGAATCCATATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGTCGGTTTCGGTTTTGGTTTCGGTTTCAACTTGATTTTAGTAGTGACGGTTTTGTATATGCTTATCTTTGGTTTGTAATTTCATGTCATTCAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTGTGTTTATGTCTCTGCCTTTTGGCTTATTACTGTCTCAAATTTGCACTTACCTTGTTTGTGTGAATGTAGTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGTTTTGCTTGCTACCTTCGAACCCGAGCACCTATGCCTATTTCATCCGGTTTTTGATACATGGTTTCATTTGATTCAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAGTAAGTAGGAGAGATTCGATTTATTACTCATCTCGTTTATTCTTATCATATCGTTTATAACACAATCATTCTAGATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGGTTAATCACAAGCTTTCTCCTCTCTCAATACTACATGTTTATAATGATTCTTACACAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGGTAACGGCCGAAACCGAGATGAGCTTGATGGTGAAGAAATGGACGACGACGATGATGATGATGTTAATTGGGATTGTTTGTTTGTTGGCAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAGGAACATCAGTAAGTGACAGTGACACAAACATAGGATTGTCAAATCAGCTCATAATAATAAAATGTAATGCACTAATTTTACATGTACGAAGATTCTAAGGTTTTTATTTTTTATTTTTTTTAAAAATAATTTTAGTTATAGAAGAAGAGATGAGAGAAATAGGAACATAGAATGTTGTGGTTTTTAAGGATTAAGGAACCACAGAACATCAATCTTCTCAAAGATTGTGAAATGTTGTTGGAATCTTCATGCAATGAATAATAAAACTCTAATTCTTTGTTTA
mRNA sequence
AGCTTCAAGTTTTCCAAATTCAAATTACTCAATTCGAAAACTATTGTTGAATCCATATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAGGAACATCAGTAAGTGACAGTGACACAAACATAGGATTGTCAAATCAGCTCATAATAATAAAATGTAATGCACTAATTTTACATGTACGAAGATTCTAAGGTTTTTATTTTTTATTTTTTTTAAAAATAATTTTAGTTATAGAAGAAGAGATGAGAGAAATAGGAACATAGAATGTTGTGGTTTTTAAGGATTAAGGAACCACAGAACATCAATCTTCTCAAAGATTGTGAAATGTTGTTGGAATCTTCATGCAATGAATAATAAAACTCTAATTCTTTGTTTA
Coding sequence (CDS)
ATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAG
Protein sequence
MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQLHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRIEQQQQQAYFSSHYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEVERSFSEMTLMPKSATNCSYFSYQMKELRLPVPEEFHFPRTESFDRMMNIMKSFSGPGSGSSSGCSSIVDEQKPPGNAAAWNHPELNLDNSEGYNLPDSPFESGTANNT
Homology
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match:
Q9SJ41 (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)
HSP 1 Score: 345.9 bits (886), Expect = 8.5e-94
Identity = 203/412 (49.27%), Postives = 271/412 (65.78%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
M F+E +V RI +++PEN I ++LL ++ +++M RLA PD + V++ VK
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 61 QLHLLALRSMPAPSPP----PSSSPGAFV---PFSIRDS-HMPLVYPDSMYE---LQNPA 120
+ LA S SPP P+ G+F P S+ S M + ++ E LQN
Sbjct: 61 E---LARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNL 120
Query: 121 QFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNC 180
QF +D L+S + S + RT+R ++ E+ + CHY++KG C
Sbjct: 121 QFLNFED-------PLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFC 180
Query: 181 KHGNSCRYLHSNQMP--GSFSQMYNVN-----DDHVFRPGSLERLEFEIVELLRSRRGSP 240
KHGN+CRY H +P SF+QM+N N ++HV P SLE+LE EI+ELL+ RRG+P
Sbjct: 181 KHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAP 240
Query: 241 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 300
ISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTKLL RLK++I+++DRPHGQHSV
Sbjct: 241 ISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSV 300
Query: 301 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 360
ILAEDA KF+++ ++N ++ +RQIY+TFPA+SSFTE DVS YF YG
Sbjct: 301 ILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTS-------YGH 360
Query: 361 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSK 394
VEDVRIPCQQ+RM+GFVTF S ETVK IL++ + H IC ARVLVKPYREKS+
Sbjct: 361 VEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match:
Q6ZK57 (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)
HSP 1 Score: 276.9 bits (707), Expect = 4.9e-73
Identity = 217/631 (34.39%), Postives = 314/631 (49.76%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
ME E ++ F R+ +++PE+V I +LL + + E+ +LA P+ + + K
Sbjct: 50 MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109
Query: 61 LHLLALRSMPAPSPPPSSSPGAFVP------------FS---------IRDSHMPLVYPD 120
L ++ R A + P G V FS +R + P
Sbjct: 110 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 169
Query: 121 SM--YELQNPAQFFCLDDCIEPSNRGLSSY-DCSYVENAAMVNKFSSRTARH-------- 180
+ Y++Q+P Q++ P+ + V +A+ + R +H
Sbjct: 170 AAFGYQVQSP-QYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFG 229
Query: 181 ----YSTMVEYQP----------------------RTCHYYSKGNCKHGNSCRYLHSNQM 240
Y + P R CHY+SKG CK+G +C Y H
Sbjct: 230 GGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVY 289
Query: 241 PGSFS------QMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYG 300
+ + +YN V PGSLE LE EI ELL SRRG P+SIASLP +Y EKYG
Sbjct: 290 QDALAGAAINGDVYNHQPGGV-TPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYG 349
Query: 301 KVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHR-- 360
K LQA+GYLTESQRHGK+G+SLT+LL+RL + I+VI+RPHGQHSV+LAEDA K++D R
Sbjct: 350 KGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAEDAAKYMDFRGG 409
Query: 361 --KDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQR 420
+T +S+ QIY+TFPA+S+F EDDV++YF Q YG V DVRIPCQ+R
Sbjct: 410 GGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQ-------YGPVRDVRIPCQER 469
Query: 421 RMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRIEQQQQQAYF 480
RMFGFV+F S ETV IL + H ICG+RVLVKPYREKSK ++R D I + Y
Sbjct: 470 RMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNI--KSMVPYC 529
Query: 481 SSHYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEVERSFSEMTLMPKSATNCSYFSY 540
+ + E + YD AS ++R ++ E+++ LE+ER + + + +YF
Sbjct: 530 PPRFFEFDQELYTAEYD-ASRLMRKQLAEKREM-LLEMERRRATVRRLESMPPQFAYFDC 589
Query: 541 QMKELRLPVPEEFHFPRTESFDRMMNIMKSFSGPGSGSSSGCSSIVDEQKPPGNAAAWNH 559
+++ H + +S + +++M P S + + Q PP A
Sbjct: 590 SIED-----ASPLHSLQDDS--KQLDLM----NPSLASPDPLEIVSNSQAPPTQAG---- 648
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match:
Q84ZT0 (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.4e-48
Identity = 145/404 (35.89%), Postives = 212/404 (52.48%), Query Frame = 0
Query: 9 IVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQLHLLALRS 68
++ +R + +P +IL Y Q + + A +PD H LRS
Sbjct: 52 VLLNRAREFEPSRANG--GYILSTSSYPQ-IRQYAASPDEH----------------LRS 111
Query: 69 MPAPSPPPSSSPGAFVPFS--------------IRDSHMPLVYPDSMYELQNPAQFFCLD 128
+P+ PPP PG +P + I+ PL+ D LQ+ F
Sbjct: 112 LPSLLPPP---PGQELPLAYLRAQRQSSGNYRGIQAQRRPLI--DQTGALQSS---FPES 171
Query: 129 DCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHY-YSKGNCKHGNS 188
C++ + LS S +V H + + + CH+ + +G CK G +
Sbjct: 172 ICLKEELQSLSMPRNSPNAGRNLVG--------HPHSSSKSSSKPCHFHFFRGYCKKGVN 231
Query: 189 CRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYE 248
C++ H GS +++N H F SL +L+ EI ELL P+++ LP +Y+E
Sbjct: 232 CQFFH-----GSVPELHNPRQVHPF--ASLSKLDMEIRELLIG-IPPPVAVDRLPSMYFE 291
Query: 249 KYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDA-LKFID 308
KYGK L+ +G+LTESQ+HG++G SLT LL L ++I+V++R HGQ+ V+L EDA K++D
Sbjct: 292 KYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVEREHGQYHVVLVEDARKKYMD 351
Query: 309 --HRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQ 368
N T + + QIYMTFP S FT+DDV +YF+Q +G V VRIP Q
Sbjct: 352 CLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQ-------FGPVSGVRIPYQ 404
Query: 369 QRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKL 395
++RMFGFV+F ETV+LILS+ + H ICG RVLVK Y EKS+L
Sbjct: 412 EKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match:
Q0D3J9 (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 7.6e-34
Identity = 169/647 (26.12%), Postives = 274/647 (42.35%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
M+ E ++VF RI +DP++ I+ F+L+ DH ++EM RLA P+ + V+ + +
Sbjct: 1 MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60
Query: 61 LHLLAL----------------------------RSMPAPSPPPSSSPGAFVP---FSIR 120
L LL R APSP SSP ++ P FS
Sbjct: 61 LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120
Query: 121 DSHM------------PLVYPDS--------------MYELQNPAQFFCLD--------- 180
+S L+ P + M ELQ Q L+
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180
Query: 181 -------DCIEP--SNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSK 240
+C P + GL SY+ + + +S + + C YY++
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYAR 240
Query: 241 GNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIA 300
G CK+G++CR++H + +M P ++E+ + + L + ++ A
Sbjct: 241 GYCKNGSACRFVHGGLPDDAAGKM---------DPSAVEQ---QCQDFLIRSKSQRLAAA 300
Query: 301 SLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAE 360
+ P Y G + + T+ L+ LL + + + ++ +
Sbjct: 301 AFP---YSPTGSLPGSPSAATK---------CLSLLLQQQQQQNESQRAAAAAALMLGGD 360
Query: 361 DALKFIDH-RKDKNNTSPTVS-SARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVE 420
+A KF+ R ++ + + ++ +RQIY+TFPADS+F E+DVS+YF YG V
Sbjct: 361 EAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFS-------IYGPVH 420
Query: 421 DVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRI 480
DVRIP QQ+RMFGFVTF ETVKLIL++ + H IC ARVLVKPY+EK K+ ++ +
Sbjct: 421 DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQ-- 480
Query: 481 EQQQQQAYFSS-------------HYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEV 540
Q ++ FSS + L L + + +LR ++EEQQQ A E+
Sbjct: 481 HQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQ--AAEL 540
Query: 541 ERSFSEMTLMPKSATNCSYFSYQMKELRLPVPEEFHFPRTESFDRMMNIMKSFS---GPG 555
+++ + L + ++ + P P F +++ S G G
Sbjct: 541 QQA---IELHSRRLMGLQLLDFKSRAAAAPTPIGNPFSASQTAANATGESPPDSGELGKG 600
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match:
Q9SV09 (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.6e-31
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
M+ E RIV RI +DPEN I+ +LL DH ++EM RLA P+ + V+ K +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
L L+ P SP S+ + +P F +DD S
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120
Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
L S +A + + + + C Y+++G CK+G SCR++HS
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180
Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
D GS R +ELLRS P
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240
Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
A ++T S SL T+ ++Q D ++++ ++ K R ++ +
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300
Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
S A RQIY+TFPADS F E+DVS+YF +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360
Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
F ETVK IL++ + H +C +RVLVKPY+EK K+ + R NQ + SS +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420
Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
L ++N + + R + EE+ LE++ R + L+ K
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473
Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
+L P H P S R ++++K + G G S D+ N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473
Query: 541 HPELNLDNSEGYNLPDSPFES 553
PE L++S LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473
BLAST of CmaCh16G009460 vs. TAIR 10
Match:
AT2G05160.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )
HSP 1 Score: 345.9 bits (886), Expect = 6.1e-95
Identity = 203/412 (49.27%), Postives = 271/412 (65.78%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
M F+E +V RI +++PEN I ++LL ++ +++M RLA PD + V++ VK
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 61 QLHLLALRSMPAPSPP----PSSSPGAFV---PFSIRDS-HMPLVYPDSMYE---LQNPA 120
+ LA S SPP P+ G+F P S+ S M + ++ E LQN
Sbjct: 61 E---LARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNL 120
Query: 121 QFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNC 180
QF +D L+S + S + RT+R ++ E+ + CHY++KG C
Sbjct: 121 QFLNFED-------PLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFC 180
Query: 181 KHGNSCRYLHSNQMP--GSFSQMYNVN-----DDHVFRPGSLERLEFEIVELLRSRRGSP 240
KHGN+CRY H +P SF+QM+N N ++HV P SLE+LE EI+ELL+ RRG+P
Sbjct: 181 KHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAP 240
Query: 241 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 300
ISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTKLL RLK++I+++DRPHGQHSV
Sbjct: 241 ISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSV 300
Query: 301 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 360
ILAEDA KF+++ ++N ++ +RQIY+TFPA+SSFTE DVS YF YG
Sbjct: 301 ILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTS-------YGH 360
Query: 361 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSK 394
VEDVRIPCQQ+RM+GFVTF S ETVK IL++ + H IC ARVLVKPYREKS+
Sbjct: 361 VEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
BLAST of CmaCh16G009460 vs. TAIR 10
Match:
AT3G52980.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )
HSP 1 Score: 288.5 bits (737), Expect = 1.1e-77
Identity = 171/397 (43.07%), Postives = 238/397 (59.95%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
M F+E +V +RI +++PEN II ++LL D D++M RLA PD ++ +++ VK
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 61 QL----HLLALRS--------------------MPAPSPPPSSSPGAFVPFSIRDSHMPL 120
+L H + S + + SPP S G + D L
Sbjct: 61 ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSL 120
Query: 121 VYPDSMYELQNPAQFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEY 180
N F +D + S + + S RT+R ++ E+
Sbjct: 121 --------KDNVQYFLDFEDSVTSPEFSTSFF-------SQKKQSLSLRTSRRSLSLPEF 180
Query: 181 QPRTCHYYSKGNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLR 240
+ CHY++KG CKHGN+C H+N +++HV PGSLE+LE EI+ELL+
Sbjct: 181 PLKICHYFNKGFCKHGNNC---HNNLS----------DEEHVVSPGSLEKLEREIIELLK 240
Query: 241 SRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRP 300
SRRG+PISIA LPM+Y+EKYG+ LQAEGYLTESQRHGK+GFSLTKLL RLK++I++IDRP
Sbjct: 241 SRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRP 300
Query: 301 HGQHSVILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKC 360
HGQHSVILAED KF+++ +++ ++ +RQ+Y+TFPA+SSFTE DVS+YF +
Sbjct: 301 HGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSE---- 360
Query: 361 FIHYGLVEDVRIPCQQRRMFGFVTFHSVETVKLILSE 373
G VEDVRIPCQQ+RM+GFVTF +ETVK IL++
Sbjct: 361 ---VGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAK 362
BLAST of CmaCh16G009460 vs. TAIR 10
Match:
AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )
HSP 1 Score: 139.0 bits (349), Expect = 1.1e-32
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
M+ E RIV RI +DPEN I+ +LL DH ++EM RLA P+ + V+ K +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
L L+ P SP S+ + +P F +DD S
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120
Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
L S +A + + + + C Y+++G CK+G SCR++HS
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180
Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
D GS R +ELLRS P
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240
Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
A ++T S SL T+ ++Q D ++++ ++ K R ++ +
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300
Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
S A RQIY+TFPADS F E+DVS+YF +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360
Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
F ETVK IL++ + H +C +RVLVKPY+EK K+ + R NQ + SS +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420
Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
L ++N + + R + EE+ LE++ R + L+ K
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473
Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
+L P H P S R ++++K + G G S D+ N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473
Query: 541 HPELNLDNSEGYNLPDSPFES 553
PE L++S LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473
BLAST of CmaCh16G009460 vs. TAIR 10
Match:
AT3G51950.2 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )
HSP 1 Score: 139.0 bits (349), Expect = 1.1e-32
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
M+ E RIV RI +DPEN I+ +LL DH ++EM RLA P+ + V+ K +
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
L L+ P SP S+ + +P F +DD S
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120
Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
L S +A + + + + C Y+++G CK+G SCR++HS
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180
Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
D GS R +ELLRS P
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240
Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
A ++T S SL T+ ++Q D ++++ ++ K R ++ +
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300
Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
S A RQIY+TFPADS F E+DVS+YF +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360
Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
F ETVK IL++ + H +C +RVLVKPY+EK K+ + R NQ + SS +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420
Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
L ++N + + R + EE+ LE++ R + L+ K
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473
Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
+L P H P S R ++++K + G G S D+ N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473
Query: 541 HPELNLDNSEGYNLPDSPFES 553
PE L++S LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473
BLAST of CmaCh16G009460 vs. TAIR 10
Match:
AT5G12440.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )
HSP 1 Score: 137.5 bits (345), Expect = 3.3e-32
Identity = 138/540 (25.56%), Postives = 231/540 (42.78%), Query Frame = 0
Query: 1 MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
M+ + ++ +I ++P+ II ++LLHD D+++ LA P+ +Q + VK
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 LHLLALRS----MPAPSP------PP-------------------SSSPGAFVPFS---- 120
L + + S +PSP PP SSP + P+S
Sbjct: 61 LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSPWSFNNC 120
Query: 121 ----------IRDSHMPLVYPDSMYELQ------------------------NPAQFFCL 180
I H P+ P S ++ N F
Sbjct: 121 INGNNGNNPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180
Query: 181 DDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQP------RTCHYYSKGN 240
D C + + S Y + R+ ++ V + C Y+S+G
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSCDASFVSGDDGFGGGCKPCVYFSRGL 240
Query: 241 CKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLR------SRRGSP 300
CK+G SC+++H G + + N P +E + E++R +R +
Sbjct: 241 CKNGESCKFIH-----GGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLAYQQQRLAS 300
Query: 301 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 360
+ P + YEK L + +QR G F + + +
Sbjct: 301 QILGRAPQLPYEKRMDFLLQQ----HAQRDGGLPFGDERFWSSSPGRL------------ 360
Query: 361 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 420
+ ++ H D++N S++RQIY+TFPADS+F ++DV+ YF +G
Sbjct: 361 ----ERMELAMHLGDQSN-----SASRQIYLTFPADSTFKDEDVATYFSL-------FGT 420
Query: 421 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQD 453
V+DVRIP QQ+RMFGFV+F ETVK++L+ + H IC +RVLVKPY+EK K+L++K Q
Sbjct: 421 VQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQ 480
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SJ41 | 8.5e-94 | 49.27 | Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Q6ZK57 | 4.9e-73 | 34.39 | Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX... | [more] |
Q84ZT0 | 2.4e-48 | 35.89 | Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... | [more] |
Q0D3J9 | 7.6e-34 | 26.12 | Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX... | [more] |
Q9SV09 | 1.6e-31 | 28.70 | Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Match Name | E-value | Identity | Description | |
AT2G05160.1 | 6.1e-95 | 49.27 | CCCH-type zinc fingerfamily protein with RNA-binding domain | [more] |
AT3G52980.1 | 1.1e-77 | 43.07 | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... | [more] |
AT3G51950.1 | 1.1e-32 | 28.70 | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... | [more] |
AT3G51950.2 | 1.1e-32 | 28.70 | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... | [more] |
AT5G12440.1 | 3.3e-32 | 25.56 | CCCH-type zinc fingerfamily protein with RNA-binding domain | [more] |