CmaCh16G009460 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionzinc finger CCCH domain-containing protein 18-like
LocationCma_Chr16: 7293534 .. 7297275 (-)
RNA-Seq ExpressionCmaCh16G009460
SyntenyCmaCh16G009460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTCAAGTTTTCCAAATTCAAATTACTCAATTCGAAAACTATGTAAGTGTCTTTTTATTTTCATCTTTTCATCAATTTAATTACGAATTCGTTTCTTTTGCTGAGTTCTGTTCTTCTCATGAACTGTTCTTCATCACAGAGATTCAAAAAGAAAATTCGAGTTTGGTTTTTTTTTTTTCCTTTTTTTTTCTGTATAAATCTCCCAGATTTTGGTACTTTTTGCACTTTTTTTCAAGATTTTTGTAGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCGAAAGTTTGTATCTTTTTTTGTTTTTTTGAAAAATTTCTAAAGAATTCTATGTTTTTTTTGAAGATTTTTCTGGTTTAATCCAATTGTTATGATGTTTTTTCAAATGGGTTTTCGAAAGTTTGTTTCTTTTTTTGGTTTTTTTGAAAAATTTCTAAGGAATTCTATGTTTTTTTTGAAGATTTTTGTAGTTCAATCCGATTCTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTGCTTCTTTTTTTGGTTTTTTTGAAAGATTTCTAAAGAATTCTATGTTTTTGGGAAGATTTTTCTTGTTTAATCCGATTGTTATGATGTTTTTTCAAATGGGTTTTCAAAAGTTTACTTCTTTTTTGGTTTTTTGAAAAATTTCTAAAGAATTCGATGTTTTTTTTCTAAAGATTTTTGTAGTTTAATCCAATTGTTGTTATGTTTTTTCAAATGGGTTTTCAAACGTTCGAATCTTTTTTTGTTTTTTTGAAAAATTTCTAAAGAATTCTATGAAGTTGAGACCAAACACCGAAGAACAAGCGATTTTTTTTTTGAAGAAATTAGTGTTTTTTCTTTGTTTAGAACAAATTATGGAATGTGATTACGATTTTTCCATCTTGGGTTCGATCCGTTTCTCTGGCATTCTTTCGTATTTAATTCGTTTTTATTTCATTGTAGTGTTGAATCCATATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGTCGGTTTCGGTTTTGGTTTCGGTTTCAACTTGATTTTAGTAGTGACGGTTTTGTATATGCTTATCTTTGGTTTGTAATTTCATGTCATTCAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTGTGTTTATGTCTCTGCCTTTTGGCTTATTACTGTCTCAAATTTGCACTTACCTTGTTTGTGTGAATGTAGTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGTTTTGCTTGCTACCTTCGAACCCGAGCACCTATGCCTATTTCATCCGGTTTTTGATACATGGTTTCATTTGATTCAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAGTAAGTAGGAGAGATTCGATTTATTACTCATCTCGTTTATTCTTATCATATCGTTTATAACACAATCATTCTAGATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGGTTAATCACAAGCTTTCTCCTCTCTCAATACTACATGTTTATAATGATTCTTACACAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGGTAACGGCCGAAACCGAGATGAGCTTGATGGTGAAGAAATGGACGACGACGATGATGATGATGTTAATTGGGATTGTTTGTTTGTTGGCAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAGGAACATCAGTAAGTGACAGTGACACAAACATAGGATTGTCAAATCAGCTCATAATAATAAAATGTAATGCACTAATTTTACATGTACGAAGATTCTAAGGTTTTTATTTTTTATTTTTTTTAAAAATAATTTTAGTTATAGAAGAAGAGATGAGAGAAATAGGAACATAGAATGTTGTGGTTTTTAAGGATTAAGGAACCACAGAACATCAATCTTCTCAAAGATTGTGAAATGTTGTTGGAATCTTCATGCAATGAATAATAAAACTCTAATTCTTTGTTTA

mRNA sequence

AGCTTCAAGTTTTCCAAATTCAAATTACTCAATTCGAAAACTATTGTTGAATCCATATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAGGAACATCAGTAAGTGACAGTGACACAAACATAGGATTGTCAAATCAGCTCATAATAATAAAATGTAATGCACTAATTTTACATGTACGAAGATTCTAAGGTTTTTATTTTTTATTTTTTTTAAAAATAATTTTAGTTATAGAAGAAGAGATGAGAGAAATAGGAACATAGAATGTTGTGGTTTTTAAGGATTAAGGAACCACAGAACATCAATCTTCTCAAAGATTGTGAAATGTTGTTGGAATCTTCATGCAATGAATAATAAAACTCTAATTCTTTGTTTA

Coding sequence (CDS)

ATGGAGTTTTCGGAGTACAGAAGAATTGTATTCCATCGAATCAGTAAAATAGATCCAGAGAATGTTGAGGACATCATTTGTTTTATACTTCTTCATGATCATTATGATCAAGAAATGGCTCGCTTAGCACTAGCCCCTGACCATCATATCCAACAAGTGGTTCATCTAGTCAAGATTCAGCTGCATCTATTAGCTTTAAGATCGATGCCGGCCCCGTCCCCGCCCCCGTCCTCGTCCCCGGGAGCTTTTGTTCCTTTTTCCATTAGAGACAGTCACATGCCATTAGTATACCCTGATTCTATGTATGAACTACAAAATCCAGCTCAGTTCTTTTGTTTAGACGATTGTATCGAACCGTCGAACCGGGGTCTCTCGAGCTATGATTGTAGCTATGTTGAGAATGCTGCAATGGTTAACAAATTTAGTTCGAGGACTGCTCGACATTACTCAACCATGGTCGAGTATCAGCCGAGGACATGTCATTACTACAGCAAAGGAAATTGTAAGCATGGTAATAGTTGTAGGTATCTCCATAGCAACCAAATGCCTGGGAGCTTTTCTCAGATGTATAATGTCAATGATGATCATGTTTTTCGGCCCGGTTCACTCGAGCGATTGGAGTTTGAAATCGTTGAACTTCTTAGATCGAGACGAGGTAGTCCTATTTCAATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGTAAAGTTCTTCAAGCAGAAGGATACTTGACTGAGAGTCAGAGGCATGGTAAATCGGGTTTTAGCTTAACGAAACTCCTCACTCGTTTGAAAAGCAGCATCCAGGTGATCGACAGGCCTCATGGGCAACATTCTGTCATTTTAGCAGAAGACGCTTTGAAATTCATCGACCATCGGAAGGACAAGAACAACACGAGTCCGACCGTTAGCAGCGCACGACAGATATATATGACATTTCCAGCTGATAGCAGCTTCACTGAAGATGATGTTTCTGATTACTTCAGGCAAAATGCAAAATGCTTTATCCATTATGGACTAGTTGAAGATGTAAGAATCCCTTGTCAACAAAGAAGGATGTTCGGTTTCGTGACGTTTCACAGCGTCGAGACAGTGAAACTAATCTTGTCCGAGGACAGCGAGCATTTAATTTGCGGGGCTCGAGTTCTCGTGAAACCTTATAGGGAAAAGTCGAAGCTGTTGGAAAGGAAGAACCAAGATAGGATTGAACAACAGCAACAGCAAGCTTATTTTTCTTCACACTATAACAGCCTCGAACCCGAGCAGCTTCACTCGAATTATGATTCTGCCTCCACAATTCTGAGGCTAAGAATCGAAGAACAACAACAACAACACGCACTCGAAGTCGAACGGAGCTTTTCCGAGATGACGTTAATGCCGAAATCTGCTACGAATTGTTCGTACTTTAGCTATCAGATGAAAGAACTAAGACTTCCAGTTCCAGAAGAATTTCACTTCCCAAGAACAGAGAGTTTTGATCGTATGATGAATATTATGAAAAGTTTCTCCGGCCCGGGATCTGGCTCTAGTTCGGGGTGTAGCTCGATAGTCGATGAACAAAAACCACCTGGAAACGCGGCGGCTTGGAATCACCCTGAGCTGAACCTCGACAACAGCGAAGGATACAATCTACCAGACAGCCCATTTGAGTCTGGAACAGCAAACAACACATAG

Protein sequence

MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQLHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRIEQQQQQAYFSSHYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEVERSFSEMTLMPKSATNCSYFSYQMKELRLPVPEEFHFPRTESFDRMMNIMKSFSGPGSGSSSGCSSIVDEQKPPGNAAAWNHPELNLDNSEGYNLPDSPFESGTANNT
Homology
BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match: Q9SJ41 (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 8.5e-94
Identity = 203/412 (49.27%), Postives = 271/412 (65.78%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
           M F+E   +V  RI +++PEN   I  ++LL  ++ +++M RLA  PD  +  V++ VK 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  QLHLLALRSMPAPSPP----PSSSPGAFV---PFSIRDS-HMPLVYPDSMYE---LQNPA 120
           +   LA  S    SPP    P+   G+F    P S+  S  M   + ++  E   LQN  
Sbjct: 61  E---LARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNL 120

Query: 121 QFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNC 180
           QF   +D        L+S + S    +        RT+R   ++ E+  + CHY++KG C
Sbjct: 121 QFLNFED-------PLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFC 180

Query: 181 KHGNSCRYLHSNQMP--GSFSQMYNVN-----DDHVFRPGSLERLEFEIVELLRSRRGSP 240
           KHGN+CRY H   +P   SF+QM+N N     ++HV  P SLE+LE EI+ELL+ RRG+P
Sbjct: 181 KHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAP 240

Query: 241 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 300
           ISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTKLL RLK++I+++DRPHGQHSV
Sbjct: 241 ISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSV 300

Query: 301 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 360
           ILAEDA KF+++  ++N     ++ +RQIY+TFPA+SSFTE DVS YF         YG 
Sbjct: 301 ILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTS-------YGH 360

Query: 361 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSK 394
           VEDVRIPCQQ+RM+GFVTF S ETVK IL++ + H IC ARVLVKPYREKS+
Sbjct: 361 VEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395

BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match: Q6ZK57 (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 4.9e-73
Identity = 217/631 (34.39%), Postives = 314/631 (49.76%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           ME  E  ++ F R+ +++PE+V  I   +LL +  + E+ +LA  P+  +   +   K  
Sbjct: 50  MEVPELVKLAFARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAA 109

Query: 61  LHLLALRSMPAPSPPPSSSPGAFVP------------FS---------IRDSHMPLVYPD 120
           L ++  R   A +  P    G  V             FS         +R  + P     
Sbjct: 110 LTVIYARCSAAAAHGPPGGGGVGVGGGGGYHQQPQQLFSRPPVPACGGVRHHYSPAAAAA 169

Query: 121 SM--YELQNPAQFFCLDDCIEPSNRGLSSY-DCSYVENAAMVNKFSSRTARH-------- 180
           +   Y++Q+P Q++       P+      +     V +A+    +  R  +H        
Sbjct: 170 AAFGYQVQSP-QYWPDSPPAPPTKAAQQEFAPPGLVVDASAEGPYPLRGGQHVLDDNNFG 229

Query: 181 ----YSTMVEYQP----------------------RTCHYYSKGNCKHGNSCRYLHSNQM 240
               Y    +  P                      R CHY+SKG CK+G +C Y H    
Sbjct: 230 GGYYYPAGEDAFPNGGGGGGGSPARARRSNGLSTRRPCHYFSKGICKNGQNCHYSHHQVY 289

Query: 241 PGSFS------QMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYG 300
             + +       +YN     V  PGSLE LE EI ELL SRRG P+SIASLP +Y EKYG
Sbjct: 290 QDALAGAAINGDVYNHQPGGV-TPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYG 349

Query: 301 KVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHR-- 360
           K LQA+GYLTESQRHGK+G+SLT+LL+RL + I+VI+RPHGQHSV+LAEDA K++D R  
Sbjct: 350 KGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAEDAAKYMDFRGG 409

Query: 361 --KDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQR 420
                 +T    +S+ QIY+TFPA+S+F EDDV++YF Q       YG V DVRIPCQ+R
Sbjct: 410 GGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQ-------YGPVRDVRIPCQER 469

Query: 421 RMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRIEQQQQQAYF 480
           RMFGFV+F S ETV  IL   + H ICG+RVLVKPYREKSK ++R   D I  +    Y 
Sbjct: 470 RMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNI--KSMVPYC 529

Query: 481 SSHYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEVERSFSEMTLMPKSATNCSYFSY 540
              +   + E   + YD AS ++R ++ E+++   LE+ER  + +  +       +YF  
Sbjct: 530 PPRFFEFDQELYTAEYD-ASRLMRKQLAEKREM-LLEMERRRATVRRLESMPPQFAYFDC 589

Query: 541 QMKELRLPVPEEFHFPRTESFDRMMNIMKSFSGPGSGSSSGCSSIVDEQKPPGNAAAWNH 559
            +++         H  + +S  + +++M     P   S      + + Q PP  A     
Sbjct: 590 SIED-----ASPLHSLQDDS--KQLDLM----NPSLASPDPLEIVSNSQAPPTQAG---- 648

BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match: Q84ZT0 (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.4e-48
Identity = 145/404 (35.89%), Postives = 212/404 (52.48%), Query Frame = 0

Query: 9   IVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQLHLLALRS 68
           ++ +R  + +P        +IL    Y Q + + A +PD H                LRS
Sbjct: 52  VLLNRAREFEPSRANG--GYILSTSSYPQ-IRQYAASPDEH----------------LRS 111

Query: 69  MPAPSPPPSSSPGAFVPFS--------------IRDSHMPLVYPDSMYELQNPAQFFCLD 128
           +P+  PPP   PG  +P +              I+    PL+  D    LQ+    F   
Sbjct: 112 LPSLLPPP---PGQELPLAYLRAQRQSSGNYRGIQAQRRPLI--DQTGALQSS---FPES 171

Query: 129 DCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHY-YSKGNCKHGNS 188
            C++   + LS    S      +V         H  +  +   + CH+ + +G CK G +
Sbjct: 172 ICLKEELQSLSMPRNSPNAGRNLVG--------HPHSSSKSSSKPCHFHFFRGYCKKGVN 231

Query: 189 CRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYE 248
           C++ H     GS  +++N    H F   SL +L+ EI ELL      P+++  LP +Y+E
Sbjct: 232 CQFFH-----GSVPELHNPRQVHPF--ASLSKLDMEIRELLIG-IPPPVAVDRLPSMYFE 291

Query: 249 KYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDA-LKFID 308
           KYGK L+ +G+LTESQ+HG++G SLT LL  L ++I+V++R HGQ+ V+L EDA  K++D
Sbjct: 292 KYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVEREHGQYHVVLVEDARKKYMD 351

Query: 309 --HRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQ 368
                   N   T + + QIYMTFP  S FT+DDV +YF+Q       +G V  VRIP Q
Sbjct: 352 CLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQ-------FGPVSGVRIPYQ 404

Query: 369 QRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKL 395
           ++RMFGFV+F   ETV+LILS+ + H ICG RVLVK Y EKS+L
Sbjct: 412 EKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404

BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match: Q0D3J9 (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.6e-34
Identity = 169/647 (26.12%), Postives = 274/647 (42.35%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           M+  E  ++VF RI  +DP++   I+ F+L+ DH ++EM RLA  P+  +  V+   + +
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 61  LHLLAL----------------------------RSMPAPSPPPSSSPGAFVP---FSIR 120
           L LL                              R   APSP   SSP ++ P   FS  
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120

Query: 121 DSHM------------PLVYPDS--------------MYELQNPAQFFCLD--------- 180
           +S               L+ P +              M ELQ   Q   L+         
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180

Query: 181 -------DCIEP--SNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSK 240
                  +C  P   + GL SY+  +        + +S +            + C YY++
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYAR 240

Query: 241 GNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIA 300
           G CK+G++CR++H      +  +M          P ++E+   +  + L   +   ++ A
Sbjct: 241 GYCKNGSACRFVHGGLPDDAAGKM---------DPSAVEQ---QCQDFLIRSKSQRLAAA 300

Query: 301 SLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAE 360
           + P   Y   G +  +    T+          L+ LL + +   +          ++  +
Sbjct: 301 AFP---YSPTGSLPGSPSAATK---------CLSLLLQQQQQQNESQRAAAAAALMLGGD 360

Query: 361 DALKFIDH-RKDKNNTSPTVS-SARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVE 420
           +A KF+   R ++ + +  ++  +RQIY+TFPADS+F E+DVS+YF         YG V 
Sbjct: 361 EAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFS-------IYGPVH 420

Query: 421 DVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQDRI 480
           DVRIP QQ+RMFGFVTF   ETVKLIL++ + H IC ARVLVKPY+EK K+ ++  +   
Sbjct: 421 DVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQ-- 480

Query: 481 EQQQQQAYFSS-------------HYNSLEPEQLHSNYDSASTILRLRIEEQQQQHALEV 540
            Q  ++  FSS               + L    L  +  +   +LR ++EEQQQ  A E+
Sbjct: 481 HQPGERVDFSSCTTPTGLDARDPFDMHQLGARMLQHSNSANEMLLRRKLEEQQQ--AAEL 540

Query: 541 ERSFSEMTLMPKSATNCSYFSYQMKELRLPVPEEFHFPRTESFDRMMNIMKSFS---GPG 555
           +++   + L  +         ++ +    P P    F  +++           S   G G
Sbjct: 541 QQA---IELHSRRLMGLQLLDFKSRAAAAPTPIGNPFSASQTAANATGESPPDSGELGKG 600

BLAST of CmaCh16G009460 vs. ExPASy Swiss-Prot
Match: Q9SV09 (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-31
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           M+  E  RIV  RI  +DPEN   I+  +LL DH ++EM RLA  P+  +  V+   K +
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
           L L+     P        SP      S+  + +P               F  +DD    S
Sbjct: 61  LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120

Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
              L S       +A   +           + + +    C Y+++G CK+G SCR++HS 
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180

Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
                        D      GS  R     +ELLRS    P                   
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240

Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
           A  ++T S        SL    T+   ++Q  D      ++++ ++  K    R ++ + 
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300

Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
           S     A RQIY+TFPADS F E+DVS+YF         +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360

Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
           F   ETVK IL++ + H +C +RVLVKPY+EK K+ +  R NQ    +       SS  +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420

Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
            L     ++N  +   + R + EE+     LE++ R    + L+              K 
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473

Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
            +L  P   H P   S      R ++++K  + G   G  S      D+          N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473

Query: 541 HPELNLDNSEGYNLPDSPFES 553
            PE  L++S    LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473

BLAST of CmaCh16G009460 vs. TAIR 10
Match: AT2G05160.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 345.9 bits (886), Expect = 6.1e-95
Identity = 203/412 (49.27%), Postives = 271/412 (65.78%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
           M F+E   +V  RI +++PEN   I  ++LL  ++ +++M RLA  PD  +  V++ VK 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  QLHLLALRSMPAPSPP----PSSSPGAFV---PFSIRDS-HMPLVYPDSMYE---LQNPA 120
           +   LA  S    SPP    P+   G+F    P S+  S  M   + ++  E   LQN  
Sbjct: 61  E---LARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNL 120

Query: 121 QFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNC 180
           QF   +D        L+S + S    +        RT+R   ++ E+  + CHY++KG C
Sbjct: 121 QFLNFED-------PLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFC 180

Query: 181 KHGNSCRYLHSNQMP--GSFSQMYNVN-----DDHVFRPGSLERLEFEIVELLRSRRGSP 240
           KHGN+CRY H   +P   SF+QM+N N     ++HV  P SLE+LE EI+ELL+ RRG+P
Sbjct: 181 KHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAP 240

Query: 241 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 300
           ISIASLPM+YYEKYG+ LQAEGYLTESQRHGK+G+SLTKLL RLK++I+++DRPHGQHSV
Sbjct: 241 ISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSV 300

Query: 301 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 360
           ILAEDA KF+++  ++N     ++ +RQIY+TFPA+SSFTE DVS YF         YG 
Sbjct: 301 ILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTS-------YGH 360

Query: 361 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSK 394
           VEDVRIPCQQ+RM+GFVTF S ETVK IL++ + H IC ARVLVKPYREKS+
Sbjct: 361 VEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395

BLAST of CmaCh16G009460 vs. TAIR 10
Match: AT3G52980.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-77
Identity = 171/397 (43.07%), Postives = 238/397 (59.95%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILL-HDHYDQEMARLALAPDHHIQQVVHLVKI 60
           M F+E   +V +RI +++PEN   II ++LL  D  D++M RLA  PD  ++ +++ VK 
Sbjct: 1   MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60

Query: 61  QL----HLLALRS--------------------MPAPSPPPSSSPGAFVPFSIRDSHMPL 120
           +L    H   + S                    + + SPP   S G     +  D    L
Sbjct: 61  ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSL 120

Query: 121 VYPDSMYELQNPAQFFCLDDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEY 180
                     N   F   +D +       S +       +      S RT+R   ++ E+
Sbjct: 121 --------KDNVQYFLDFEDSVTSPEFSTSFF-------SQKKQSLSLRTSRRSLSLPEF 180

Query: 181 QPRTCHYYSKGNCKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLR 240
             + CHY++KG CKHGN+C   H+N            +++HV  PGSLE+LE EI+ELL+
Sbjct: 181 PLKICHYFNKGFCKHGNNC---HNNLS----------DEEHVVSPGSLEKLEREIIELLK 240

Query: 241 SRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRP 300
           SRRG+PISIA LPM+Y+EKYG+ LQAEGYLTESQRHGK+GFSLTKLL RLK++I++IDRP
Sbjct: 241 SRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRP 300

Query: 301 HGQHSVILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKC 360
           HGQHSVILAED  KF+++  +++     ++ +RQ+Y+TFPA+SSFTE DVS+YF +    
Sbjct: 301 HGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSE---- 360

Query: 361 FIHYGLVEDVRIPCQQRRMFGFVTFHSVETVKLILSE 373
               G VEDVRIPCQQ+RM+GFVTF  +ETVK IL++
Sbjct: 361 ---VGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAK 362

BLAST of CmaCh16G009460 vs. TAIR 10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-32
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           M+  E  RIV  RI  +DPEN   I+  +LL DH ++EM RLA  P+  +  V+   K +
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
           L L+     P        SP      S+  + +P               F  +DD    S
Sbjct: 61  LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120

Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
              L S       +A   +           + + +    C Y+++G CK+G SCR++HS 
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180

Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
                        D      GS  R     +ELLRS    P                   
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240

Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
           A  ++T S        SL    T+   ++Q  D      ++++ ++  K    R ++ + 
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300

Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
           S     A RQIY+TFPADS F E+DVS+YF         +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360

Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
           F   ETVK IL++ + H +C +RVLVKPY+EK K+ +  R NQ    +       SS  +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420

Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
            L     ++N  +   + R + EE+     LE++ R    + L+              K 
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473

Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
            +L  P   H P   S      R ++++K  + G   G  S      D+          N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473

Query: 541 HPELNLDNSEGYNLPDSPFES 553
            PE  L++S    LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473

BLAST of CmaCh16G009460 vs. TAIR 10
Match: AT3G51950.2 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-32
Identity = 161/561 (28.70%), Postives = 237/561 (42.25%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           M+  E  RIV  RI  +DPEN   I+  +LL DH ++EM RLA  P+  +  V+   K +
Sbjct: 1   MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60

Query: 61  LHLLALRSMPAPSPPPSSSPGAFVPFSIRDSHMPLVYPDSMYELQNPAQFFCLDDCIEPS 120
           L L+     P        SP      S+  + +P               F  +DD    S
Sbjct: 61  LGLMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRS 120

Query: 121 NRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQPRTCHYYSKGNCKHGNSCRYLHSN 180
              L S       +A   +           + + +    C Y+++G CK+G SCR++HS 
Sbjct: 121 TDFLGSV------HARSGSCVLDGLGYGGDSDLGFGGVPCSYFARGFCKNGASCRFVHS- 180

Query: 181 QMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLRSRRGSPISIASLPMIYYEKYGKVLQ 240
                        D      GS  R     +ELLRS    P                   
Sbjct: 181 -------------DGGADLVGSPSR-----IELLRSNSVPP-----------------RL 240

Query: 241 AEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSVILAEDALKFIDHRKDKNNT 300
           A  ++T S        SL    T+   ++Q  D      ++++ ++  K    R ++ + 
Sbjct: 241 AHHFMTRS--------SLPSFSTK-GVNLQQNDVQRAAAALMIGDELQKLGRWRPERIDL 300

Query: 301 SPTVSSA-RQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGLVEDVRIPCQQRRMFGFVT 360
           S     A RQIY+TFPADS F E+DVS+YF         +G V+DVRIP QQ+RMFGFVT
Sbjct: 301 SAMACPASRQIYLTFPADSRFREEDVSNYFST-------FGPVQDVRIPYQQKRMFGFVT 360

Query: 361 FHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLE--RKNQDRIEQQQQQAYFSSHYN 420
           F   ETVK IL++ + H +C +RVLVKPY+EK K+ +  R NQ    +       SS  +
Sbjct: 361 FVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRD 420

Query: 421 SLEPEQLHSNYDSASTILRLRIEEQQQQHALEVE-RSFSEMTLMPKSATNCSYFSYQMKE 480
            L     ++N  +   + R + EE+     LE++ R    + L+              K 
Sbjct: 421 VLGGRGFYNN--TQDVLWRSKFEEE----ILELQSRRLMNLQLLDVK-----------KH 473

Query: 481 LRLPVPEEFHFPRTES----FDRMMNIMK-SFSGPGSGSSSGCSSIVDEQKPPGNAAAWN 540
            +L  P   H P   S      R ++++K  + G   G  S      D+          N
Sbjct: 481 FQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDD--------TMN 473

Query: 541 HPELNLDNSEGYNLPDSPFES 553
            PE  L++S    LPDSPF S
Sbjct: 541 LPE-RLEDS----LPDSPFAS 473

BLAST of CmaCh16G009460 vs. TAIR 10
Match: AT5G12440.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain )

HSP 1 Score: 137.5 bits (345), Expect = 3.3e-32
Identity = 138/540 (25.56%), Postives = 231/540 (42.78%), Query Frame = 0

Query: 1   MEFSEYRRIVFHRISKIDPENVEDIICFILLHDHYDQEMARLALAPDHHIQQVVHLVKIQ 60
           M+  +   ++  +I  ++P+    II ++LLHD  D+++  LA  P+  +Q  +  VK  
Sbjct: 1   MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60

Query: 61  LHLLALRS----MPAPSP------PP-------------------SSSPGAFVPFS---- 120
           L + +  S      +PSP      PP                    SSP +  P+S    
Sbjct: 61  LGIFSNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSPWSFNNC 120

Query: 121 ----------IRDSHMPLVYPDSMYELQ------------------------NPAQFFCL 180
                     I   H P+  P S ++                          N    F  
Sbjct: 121 INGNNGNNPHISPKHTPISKPFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLD 180

Query: 181 DDCIEPSNRGLSSYDCSYVENAAMVNKFSSRTARHYSTMVEYQP------RTCHYYSKGN 240
           D C +  +    S    Y  +         R+    ++ V          + C Y+S+G 
Sbjct: 181 DSCSKTEDLVDPSIPLDYSVDGDGETHLHRRSFSCDASFVSGDDGFGGGCKPCVYFSRGL 240

Query: 241 CKHGNSCRYLHSNQMPGSFSQMYNVNDDHVFRPGSLERLEFEIVELLR------SRRGSP 300
           CK+G SC+++H     G +    + N      P  +E    +  E++R       +R + 
Sbjct: 241 CKNGESCKFIH-----GGYPDNMDGNGIVADSPRKMENFVRQHEEMMRLKLAYQQQRLAS 300

Query: 301 ISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKSSIQVIDRPHGQHSV 360
             +   P + YEK    L  +     +QR G   F   +  +     +            
Sbjct: 301 QILGRAPQLPYEKRMDFLLQQ----HAQRDGGLPFGDERFWSSSPGRL------------ 360

Query: 361 ILAEDALKFIDHRKDKNNTSPTVSSARQIYMTFPADSSFTEDDVSDYFRQNAKCFIHYGL 420
               + ++   H  D++N     S++RQIY+TFPADS+F ++DV+ YF         +G 
Sbjct: 361 ----ERMELAMHLGDQSN-----SASRQIYLTFPADSTFKDEDVATYFSL-------FGT 420

Query: 421 VEDVRIPCQQRRMFGFVTFHSVETVKLILSEDSEHLICGARVLVKPYREKSKLLERKNQD 453
           V+DVRIP QQ+RMFGFV+F   ETVK++L+  + H IC +RVLVKPY+EK K+L++K Q 
Sbjct: 421 VQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQ 480

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SJ418.5e-9449.27Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q6ZK574.9e-7334.39Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX... [more]
Q84ZT02.4e-4835.89Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... [more]
Q0D3J97.6e-3426.12Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX... [more]
Q9SV091.6e-3128.70Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
AT2G05160.16.1e-9549.27CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
AT3G52980.11.1e-7743.07Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G51950.11.1e-3228.70Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G51950.21.1e-3228.70Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT5G12440.13.3e-3225.56CCCH-type zinc fingerfamily protein with RNA-binding domain [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 154..180
e-value: 0.0044
score: 26.3
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 155..179
e-value: 9.9E-5
score: 22.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 154..181
score: 14.980874
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 309..386
e-value: 5.0E-6
score: 36.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 308..390
score: 9.370975
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 202..281
e-value: 9.1E-11
score: 41.5
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 202..285
score: 10.909037
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 315..394
e-value: 6.0E-9
score: 37.9
NoneNo IPR availableGENE3D4.10.1000.10coord: 150..234
e-value: 4.1E-6
score: 28.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..519
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 537..558
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..558
NoneNo IPR availablePANTHERPTHR24009RNA-BINDING (RRM/RBD/RNP MOTIFS)coord: 1..78
coord: 91..553
NoneNo IPR availablePANTHERPTHR24009:SF23TRANSCRIPTION FACTOR C3H FAMILY-RELATEDcoord: 91..553
NoneNo IPR availablePANTHERPTHR24009:SF23TRANSCRIPTION FACTOR C3H FAMILY-RELATEDcoord: 1..78
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 156..179
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 319..411

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009460.1CmaCh16G009460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding