CmaCh16G009410 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G009410
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionheterogeneous nuclear ribonucleoprotein 1-like
LocationCma_Chr16: 7238076 .. 7240891 (-)
RNA-Seq ExpressionCmaCh16G009410
SyntenyCmaCh16G009410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGGTTGTGTATGGTTTGAATTGAACGATTCTTCTTAGTTTTGATTTTGATTTTGATTTGGGTATTTTGCGATGTCTCGTAAATCGAAATTCATTGAATGATTCATTGTTTGGTAATAGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTGAGATTTTCTTCTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCGATCATACATTTTTCAACATTTGATTCCTGTTCTTGGCAATTCTGTATAAATTTAGATGTGATGTATTCTGTGGATGCAATTTGTAGGATTAGAATATGTGAAATTTGAGTTGTGTTCTTGTTAAATGTGGCTTTCAATTATTAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGTAAACACACCCTTTGCTTTATTTTATTTATAGTCACGTTTTCATTATAGCGTCTCGACTTGCGACTCTGAATTTACCTGAAAATAGAACCATTTGGCATTTGATTATTGTTGTGAATAGGAATTGCTGCGTAGAAGAAGATAAATTGAAAATATAGTTGCAATGAATGAAACATGATACGAAGAAGGATTTGGATTCGGATTCGGATTCGTAATTTTTATACCGCTCGTTCAGCTGATGAGCTAAAAAGGGAACACTGATCTGATAACACACTCTAGACTCGGTTCCTCGACGAAAAAGGCAAGCAATACATAAACATAGATTTGGAAAGAAGAAAGGAGACAGATGACGACGACGACGACGACCGAAATCAAATACTGTAATTTTTCGTTTGCATTTGCGTTTTTTTTTCGTTAGCAAGTGGTAGAGTTGTGTTGTTGGGATTGATTGAGGTGTAATAGAGTGATGTTTTGAGTAAACAGATCATTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGTATAAGAACACAGATGATGATGAACAAGTTGTTTGAGTTTGTTGTGTTGGGGAATTCATTTCAGATCTCTTTATCTATTTTGTATGGCCATTTGATTCTCATCCTTGTAGATTAGGATATGCTTTTGCTTTGCTTTTGGCTT

mRNA sequence

ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAGAAGAAGATAAATTGAAAATATAGTTGCAATGAATGAAACATGATACGAAGAAGGATTTGGATTCGGATTCGGATTCGTAATTTTTATACCGCTCGTTCAGCTGATGAGCTAAAAAGGGAACACTGATCTGATAACACACTCTAGACTCGGTTCCTCGACGAAAAAGGCAAGCAATACATAAACATAGATTTGGAAAGAAGAAAGGAGACAGATGACGACGACGACGACGACCGAAATCAAATACTGTAATTTTTCGTTTGCATTTGCGTTTTTTTTTCGTTAGCAAGTGGTAGAGTTGTGTTGTTGGGATTGATTGAGGTGTAATAGAGTGATGTTTTGAGTAAACAGATCATTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGTATAAGAACACAGATGATGATGAACAAGTTGTTTGAGTTTGTTGTGTTGGGGAATTCATTTCAGATCTCTTTATCTATTTTGTATGGCCATTTGATTCTCATCCTTGTAGATTAGGATATGCTTTTGCTTTGCTTTTGGCTT

Coding sequence (CDS)

ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAG

Protein sequence

MFHDSICSFFLACRILSEFSVHNRSLLCLLTSIHIFLPTRLDCVFLFQISDLGSEKMESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLSPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMGNFRVAYGNNDDNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYRELYRDQVVHNDVTWQSTTPELDDSMAFGYGLGNLASDDPTKSSESSLANYDISSRQSTRGIAA
Homology
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-63
Identity = 153/390 (39.23%), Postives = 213/390 (54.62%), Query Frame = 0

Query: 57  MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
           M+SD GKLF+GGISW+TDE++LR++F NYGEV +A++MRD+ TGR RGFGFV+F+DP V 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNR--NIGSS-IQGSPSSGRTKKIFVGGLAST 176
           +RV+ EKH ID R V+ K+A+ +++Q +  R  N+ +S   G  +  +TKKIFVGGL  T
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120

Query: 177 VTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMV 236
           +T+ +F++YF+ +G +TDV +MYD +T RPRGFGF+++DSE+ VD VLHKTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180

Query: 237 EVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFL 296
           EVKRA+PK+  PG           G S   G    Y QGY  +     G     R     
Sbjct: 181 EVKRALPKDANPGGG---------GRSMGGGGSGGY-QGYGGNESSYDGRMDSNRFLQHQ 240

Query: 297 SPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGR 356
           S   G+P  G     G   GYG   N                     Y    G +GG G 
Sbjct: 241 SVGNGLPSYG---SSGYGAGYGNGSN---------------GAGYGAYGGYTGSAGGYGA 300

Query: 357 GDSPLNSSTWNVWGNGSMSTASV-------NSSVSGMGNFRVAYGNNDDNWNLPAVS--- 416
           G +    +T N+ G G  S+  V         + SG GN     G     + +P  +   
Sbjct: 301 GATAGYGAT-NIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPT 360

Query: 417 ---NHVGGENVPDNGYAVRDNGVGFRGGYG 431
              +    +     GY+  D+G G +  YG
Sbjct: 361 QSPSGYSNQGYGYGGYSGSDSGYGNQAAYG 361

BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 2.3e-48
Identity = 113/278 (40.65%), Postives = 155/278 (55.76%), Query Frame = 0

Query: 60  DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
           ++GKLF+GG+ W T +E LR YF  YGEVV+ VIM+D+TT ++RGFGFV F DP     V
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPS-SGRTKKIFVGGLASTVTEA 179
           +  + H +DGR ++ K   P+  Q    R      +G  S S ++ KIFVGG+     E 
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127

Query: 180 DFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKR 239
           + ++YF +FG +T+VV++YD   QRPRGFGFIT++ E+ VD+ ++  FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187

Query: 240 AIP---KEQTPGPNRSPLVGYNFGMSRASGFLN----NYTQGYNM--------SPLGGIG 299
           A P   K Q PG   +   G     S A+G+       + QGY            +GG G
Sbjct: 188 AEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247

Query: 300 MRSDGRLS-----PFLSPRTGVPPLGLNFEQGLRQGYG 316
               GR +     PF S     PP G    QG  QGYG
Sbjct: 248 PPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285

BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.5e-47
Identity = 111/278 (39.93%), Postives = 155/278 (55.76%), Query Frame = 0

Query: 60  DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
           ++GKLF+GG+ W T +E LR YF  YGEVV+ VIM+D+TT ++RGFGFV F DP     V
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPS-SGRTKKIFVGGLASTVTEA 179
           +  + H +DGR ++ K   P+  Q    R      +G  S + ++ KIFVGG+     E 
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127

Query: 180 DFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKR 239
           + ++YF +FG +T+VV++YD   QRPRGFGFIT++ E+ VD+ ++  FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187

Query: 240 AIP---KEQTPGPNRSPLVGYNFGMSRASGFLN----NYTQGYNM--------SPLGGIG 299
           A P   K Q PG   +   G     + A+G+       + QGY            +GG G
Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247

Query: 300 MRSDGRLS-----PFLSPRTGVPPLGLNFEQGLRQGYG 316
               GR +     PF S     PP G    QG  QGYG
Sbjct: 248 PPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285

BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match: Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.6e-47
Identity = 104/250 (41.60%), Postives = 148/250 (59.20%), Query Frame = 0

Query: 60  DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
           ++GKLF+GG+ W T +E LR YF  YGEVV+ VIM+D+TT ++RGFGFV F DP     V
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSP--SSGRTKKIFVGGLASTVTE 179
           +  + H +DGR ++ K   P+  Q   +R      Q  P   + R+ KIFVGG+     E
Sbjct: 68  LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127

Query: 180 ADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVK 239
            + ++YF++FG +T+VV++YD   QRPRGFGFIT++ E+ VD+ ++  FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187

Query: 240 RAIP---KEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFL 299
           RA P   K QTPGP  S   G     S A+G+     Q +      G+ M +   +  + 
Sbjct: 188 RAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYG 247

Query: 300 SP--RTGVPP 302
            P  R G PP
Sbjct: 248 QPAGRGGPPP 257

BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-45
Identity = 91/196 (46.43%), Postives = 127/196 (64.80%), Query Frame = 0

Query: 48  QISDLGSEKMESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGF 107
           ++      ++ +D GK+FIGG+SW T  E LRDYFG YG++ EA++M+D TT R+RGFGF
Sbjct: 15  ELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGF 74

Query: 108 VVFADPVVAERVILE-KHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIF 167
           V F+DP   ++V+ +  H +DG+ V+ K A P+     +               RTKKIF
Sbjct: 75  VTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKM-------------VTRTKKIF 134

Query: 168 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 227
           VGGL++  T  D + YF+QFG I D ++M+D  T R RGFGF+T+ SE+VVD+V    FH
Sbjct: 135 VGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFH 194

Query: 228 ELNGKMVEVKRAIPKE 243
           E+N KMVE K+A PKE
Sbjct: 195 EINNKMVECKKAQPKE 197

BLAST of CmaCh16G009410 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 444.5 bits (1142), Expect = 1.2e-124
Identity = 257/493 (52.13%), Postives = 328/493 (66.53%), Query Frame = 0

Query: 57  MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
           M+SD GKLFIGGISWDT+EERL++YF ++GEV+EAVI++DRTTGRARGFGFVVFADP VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSS-GRTKKIFVGGLASTVT 176
           E VI EKH IDGR VEAKKAVP+DDQNM+NR+  SSIQGSP   GRT+KIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 177 EADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEV 236
           E+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITYDSEE V++VL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 237 KRAIPKEQTPGPNRSPL-VGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLS 296
           KRA+PKE +PGP+RSPL  GY++G++R +  LN Y QG+N + +GG G+R DGR SP  +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 297 PRTGVP------PLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYS 356
            R+G         + +NF+QGL  G+    N   +    + +S YY GN+NR+   +GY 
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300

Query: 357 GGNGRGDSPLNSS-TWNVWGN-----------GSMSTASVNSSVSGMGNFRVAYGNNDDN 416
           GGNG G+S   SS T N+WGN            S S   +  S SG       +GN+  N
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360

Query: 417 WNLPAVSNH-VGGENVPDNGYAVRDNGVGF-RGGY-----GGNVVSNATRKAFAETTN-- 476
           W  P   N+ V  ENV        ++G G   GGY     G N  + ++  + A  TN  
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420

Query: 477 GFERS-YRELYRDQVVHNDVTWQSTTPELDDSMAFGYGL-GNLASDDPT--KSSESSLAN 517
           G++ +   E Y +  V++D TW+S TPE +    F YG+ G + S D +   SS   + +
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480

BLAST of CmaCh16G009410 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 441.4 bits (1134), Expect = 9.8e-124
Identity = 255/491 (51.93%), Postives = 326/491 (66.40%), Query Frame = 0

Query: 57  MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
           M+SD GKLFIGGISWDT+EERL++YF ++GEV+EAVI++DRTTGRARGFGFVVFADP VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSS-GRTKKIFVGGLASTVT 176
           E VI EKH IDGR VEAKKAVP+DDQNM+NR+  SSIQGSP   GRT+KIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 177 EADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEV 236
           E+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITYDSEE V++VL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 237 KRAIPKEQTPGPNRSPL-VGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLS 296
           KRA+PKE +PGP+RSPL  GY++G++R +  LN Y QG+N + +GG G+R DGR SP  +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 297 PRTGVP------PLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYS 356
            R+G         + +NF+QGL  G+    N   +    + +S YY GN+NR+   +GY 
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300

Query: 357 GGNGRGDSPLNSS-TWNVWGN-----------GSMSTASVNSSVSGMGNFRVAYGNNDDN 416
           GGNG G+S   SS T N+WGN            S S   +  S SG       +GN+  N
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360

Query: 417 WNLPAVSNH-VGGENVPDNGYAVRDNGVGF-RGGY-----GGNVVSNATRKAFAETTN-- 476
           W  P   N+ V  ENV        ++G G   GGY     G N  + ++  + A  TN  
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420

Query: 477 GFERS-YRELYRDQVVHNDVTWQSTTPELDDSMAFGYGL-GNLASDDPT--KSSESSLAN 515
           G++ +   E Y +  V++D TW+S TPE +    F YG+ G + S D +   SS   + +
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480

BLAST of CmaCh16G009410 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 422.9 bits (1086), Expect = 3.6e-118
Identity = 264/490 (53.88%), Postives = 317/490 (64.69%), Query Frame = 0

Query: 55  EKME--SDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFAD 114
           +KME  SDLGKLFIGGISWDTDEERL++YFG YG++VEAVIMRDRTTGRARGFGF+VFAD
Sbjct: 6   QKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 65

Query: 115 PVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSG------RTKKIF 174
           P VAERVI++KHIIDGRTVEAKKAVP+DDQ +L R+       SPS G      RTKKIF
Sbjct: 66  PSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIF 125

Query: 175 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 234
           VGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DSEE VD VLHKTFH
Sbjct: 126 VGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH 185

Query: 235 ELNGKMVEVKRAIPKE-QTPGPNRSPLVGY--NFGM----SRASGFLNNYTQGYNMSPLG 294
           ELNGKMVEVKRA+PKE  +  PNRSPL+GY  N+G+    S A+ + N++  GYN + LG
Sbjct: 186 ELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG 245

Query: 295 GIGMRSDGRLSPFLSPRTGVPP--LGLNFEQGLRQGY-GRTMNIMNSQAQEQMLSSYYNG 354
                S GR SP  S R       LGLN E  L   + G T+        +     Y+N 
Sbjct: 246 -----SAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYSRIPGNQ-----YFNS 305

Query: 355 NS-NRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNND 414
            S NRY +PIGY+    RGDS  N S  ++WGN S S        SG G N  V+ GNN 
Sbjct: 306 ASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRSDS--------SGPGWNLGVSVGNNR 365

Query: 415 DNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYR 474
            NW L +V        V DN      NG G   G G    S  +  +FA  TNGF+ S  
Sbjct: 366 GNWGLSSV--------VSDN------NGYGRSYGAG----SGLSGLSFAGNTNGFDGSIG 425

Query: 475 ELYRDQVVHNDVTWQSTTP------ELDD-SMAFGYGLGNLASDDPTKSSESSLANYDIS 518
           ELYR   V++D TWQ + P      ELD  S ++G+G+ N+ SD    +SE    NY++ 
Sbjct: 426 ELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVG 455

BLAST of CmaCh16G009410 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 422.9 bits (1086), Expect = 3.6e-118
Identity = 264/490 (53.88%), Postives = 317/490 (64.69%), Query Frame = 0

Query: 55  EKME--SDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFAD 114
           +KME  SDLGKLFIGGISWDTDEERL++YFG YG++VEAVIMRDRTTGRARGFGF+VFAD
Sbjct: 3   QKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 62

Query: 115 PVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSG------RTKKIF 174
           P VAERVI++KHIIDGRTVEAKKAVP+DDQ +L R+       SPS G      RTKKIF
Sbjct: 63  PSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIF 122

Query: 175 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 234
           VGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DSEE VD VLHKTFH
Sbjct: 123 VGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH 182

Query: 235 ELNGKMVEVKRAIPKE-QTPGPNRSPLVGY--NFGM----SRASGFLNNYTQGYNMSPLG 294
           ELNGKMVEVKRA+PKE  +  PNRSPL+GY  N+G+    S A+ + N++  GYN + LG
Sbjct: 183 ELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG 242

Query: 295 GIGMRSDGRLSPFLSPRTGVPP--LGLNFEQGLRQGY-GRTMNIMNSQAQEQMLSSYYNG 354
                S GR SP  S R       LGLN E  L   + G T+        +     Y+N 
Sbjct: 243 -----SAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYSRIPGNQ-----YFNS 302

Query: 355 NS-NRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNND 414
            S NRY +PIGY+    RGDS  N S  ++WGN S S        SG G N  V+ GNN 
Sbjct: 303 ASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRSDS--------SGPGWNLGVSVGNNR 362

Query: 415 DNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYR 474
            NW L +V        V DN      NG G   G G    S  +  +FA  TNGF+ S  
Sbjct: 363 GNWGLSSV--------VSDN------NGYGRSYGAG----SGLSGLSFAGNTNGFDGSIG 422

Query: 475 ELYRDQVVHNDVTWQSTTP------ELDD-SMAFGYGLGNLASDDPTKSSESSLANYDIS 518
           ELYR   V++D TWQ + P      ELD  S ++G+G+ N+ SD    +SE    NY++ 
Sbjct: 423 ELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVG 452

BLAST of CmaCh16G009410 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 398.3 bits (1022), Expect = 9.5e-111
Identity = 248/483 (51.35%), Postives = 308/483 (63.77%), Query Frame = 0

Query: 57  MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
           MESDLGKLFIGGISWDTDEERLRDYF NYG+VVEAVIMRDR TGRARGFGF+VFADP V+
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSP---SSGRTKKIFVGGLAST 176
           ERVI++KHIIDGRTVEAKKAVP+DDQ +L R+       SP     GRTKKIFVGGL S+
Sbjct: 61  ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120

Query: 177 VTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMV 236
           +TE +F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DS++ VDRVLHKTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180

Query: 237 EVKRAIPKEQTPGPN-RSPL---VGYNFGMSR--ASGFLNNYTQGYNM-SPLGGIGMRSD 296
           EVKRA+PKE +P  N RSPL   V Y  G +R  A+ + NN+  G    + LG +G    
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGR--- 240

Query: 297 GRLSPFL-SPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSS--YYNGNS-NRYI 356
            R SP + S R  V   GL     L      + +  +S      + S  Y+NG S NRY 
Sbjct: 241 -RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYT 300

Query: 357 APIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNNDDNWNLPA 416
           +PIG++    R +SP NS+  ++WGN         +  +G G N  V+ GNN  NW LP+
Sbjct: 301 SPIGHN----RTESPYNSNNRDLWGN--------RTDTAGPGWNLNVSNGNNRGNWGLPS 360

Query: 417 VSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYRELYRDQV 476
            S             AV ++  GF   YG +  S  +   F    NGFE S  ELYR   
Sbjct: 361 SS-------------AVSNDNNGFGRNYGTS--SGLSSSPF----NGFEGSIGELYRGGS 420

Query: 477 VHNDVTWQ------STTPELDD-SMAFGYGLGNLASDDPTKSSESSLANYDISSRQSTRG 518
           V++D TWQ       ++ ELD+ S A+GY + N+ SD      E+   +Y++ +RQ+ RG
Sbjct: 421 VYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 448

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8W0342.5e-6339.23Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q9JII52.3e-4840.65DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2[more]
Q96EP52.5e-4739.93DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
Q98SJ25.6e-4741.60DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1[more]
Q9VVE51.8e-4546.43RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
Match NameE-valueIdentityDescription
AT3G07810.11.2e-12452.13RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.29.8e-12451.93RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.13.6e-11853.88RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G26650.23.6e-11853.88RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.19.5e-11151.35RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 164..236
e-value: 2.1E-22
score: 90.4
coord: 63..134
e-value: 2.2E-23
score: 93.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 64..130
e-value: 6.8E-16
score: 57.9
coord: 165..222
e-value: 1.5E-13
score: 50.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 163..240
score: 17.131182
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 62..138
score: 17.728121
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 160..248
e-value: 3.0E-26
score: 93.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 62..144
e-value: 2.2E-26
score: 93.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 491..517
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 57..517
NoneNo IPR availablePANTHERPTHR48032:SF2RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 57..517
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 64..134
e-value: 1.36696E-38
score: 133.48
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 161..240
e-value: 1.69128E-48
score: 160.224
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 163..425
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 48..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G009410.1CmaCh16G009410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding