Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGGTTGTGTATGGTTTGAATTGAACGATTCTTCTTAGTTTTGATTTTGATTTTGATTTGGGTATTTTGCGATGTCTCGTAAATCGAAATTCATTGAATGATTCATTGTTTGGTAATAGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTGAGATTTTCTTCTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCGATCATACATTTTTCAACATTTGATTCCTGTTCTTGGCAATTCTGTATAAATTTAGATGTGATGTATTCTGTGGATGCAATTTGTAGGATTAGAATATGTGAAATTTGAGTTGTGTTCTTGTTAAATGTGGCTTTCAATTATTAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGTAAACACACCCTTTGCTTTATTTTATTTATAGTCACGTTTTCATTATAGCGTCTCGACTTGCGACTCTGAATTTACCTGAAAATAGAACCATTTGGCATTTGATTATTGTTGTGAATAGGAATTGCTGCGTAGAAGAAGATAAATTGAAAATATAGTTGCAATGAATGAAACATGATACGAAGAAGGATTTGGATTCGGATTCGGATTCGTAATTTTTATACCGCTCGTTCAGCTGATGAGCTAAAAAGGGAACACTGATCTGATAACACACTCTAGACTCGGTTCCTCGACGAAAAAGGCAAGCAATACATAAACATAGATTTGGAAAGAAGAAAGGAGACAGATGACGACGACGACGACGACCGAAATCAAATACTGTAATTTTTCGTTTGCATTTGCGTTTTTTTTTCGTTAGCAAGTGGTAGAGTTGTGTTGTTGGGATTGATTGAGGTGTAATAGAGTGATGTTTTGAGTAAACAGATCATTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGTATAAGAACACAGATGATGATGAACAAGTTGTTTGAGTTTGTTGTGTTGGGGAATTCATTTCAGATCTCTTTATCTATTTTGTATGGCCATTTGATTCTCATCCTTGTAGATTAGGATATGCTTTTGCTTTGCTTTTGGCTT
mRNA sequence
ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAGAAGAAGATAAATTGAAAATATAGTTGCAATGAATGAAACATGATACGAAGAAGGATTTGGATTCGGATTCGGATTCGTAATTTTTATACCGCTCGTTCAGCTGATGAGCTAAAAAGGGAACACTGATCTGATAACACACTCTAGACTCGGTTCCTCGACGAAAAAGGCAAGCAATACATAAACATAGATTTGGAAAGAAGAAAGGAGACAGATGACGACGACGACGACGACCGAAATCAAATACTGTAATTTTTCGTTTGCATTTGCGTTTTTTTTTCGTTAGCAAGTGGTAGAGTTGTGTTGTTGGGATTGATTGAGGTGTAATAGAGTGATGTTTTGAGTAAACAGATCATTTTTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGGTATAAGAACACAGATGATGATGAACAAGTTGTTTGAGTTTGTTGTGTTGGGGAATTCATTTCAGATCTCTTTATCTATTTTGTATGGCCATTTGATTCTCATCCTTGTAGATTAGGATATGCTTTTGCTTTGCTTTTGGCTT
Coding sequence (CDS)
ATGTTTCACGATTCAATCTGTTCTTTCTTTTTAGCCTGTCGGATTCTATCTGAATTTTCGGTTCATAATCGCTCCCTTTTGTGTCTTCTTACCTCAATCCACATTTTCCTTCCAACTAGATTGGATTGTGTTTTTCTATTTCAGATTTCGGATTTGGGATCGGAAAAGATGGAATCAGATCTTGGCAAACTCTTTATTGGCGGAATTTCTTGGGATACTGATGAAGAACGTCTTAGGGATTATTTTGGAAACTATGGCGAAGTGGTTGAAGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGTTGTTGCTGAGAGAGTCATTTTGGAGAAGCATATCATCGATGGCCGCACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAACATTGGTAGTAGCATTCAAGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTTGTTGGAGGTTTAGCTTCAACAGTCACAGAGGCAGACTTTCAGAAGTACTTTGATCAGTTTGGCACAATCACTGATGTTGTTGTTATGTATGATCACAGCACGCAAAGGCCGAGAGGTTTTGGCTTCATTACGTACGACTCGGAGGAGGTCGTCGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAAAGAGCAATCCCAAAAGAGCAAACCCCAGGGCCTAACCGGAGCCCTCTTGTAGGATATAACTTCGGTATGAGTAGAGCTAGTGGATTTCTTAACAACTATACTCAAGGCTATAATATGAGTCCTCTCGGAGGTATTGGAATGCGGTCCGATGGTAGGTTGAGTCCTTTTCTTAGCCCTCGAACCGGGGTTCCTCCTTTAGGTTTGAATTTTGAGCAAGGGCTGAGGCAAGGCTATGGTAGGACTATGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAGTTCCTATTATAATGGCAATTCGAATAGGTACATTGCCCCGATTGGCTATAGCGGAGGAAATGGACGAGGCGATTCTCCGTTAAACTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACTGCTTCCGTGAACTCTTCTGTCTCTGGAATGGGTAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAATTTGCCTGCTGTTTCTAATCATGTTGGAGGGGAGAATGTTCCTGATAATGGATATGCAGTTCGAGACAATGGCGTCGGGTTCAGAGGAGGCTATGGAGGAAATGTAGTCTCGAATGCAACACGAAAAGCATTTGCTGAAACAACCAATGGTTTCGAGAGGTCATACAGGGAATTATATCGTGATCAAGTCGTGCACAATGATGTAACTTGGCAGTCTACCACTCCTGAACTCGATGATTCTATGGCTTTTGGTTATGGTCTTGGTAACCTCGCTTCAGATGATCCAACCAAAAGTTCAGAGAGTTCTCTAGCAAATTACGACATTTCGAGCAGACAATCAACTAGAGGAATTGCTGCGTAG
Protein sequence
MFHDSICSFFLACRILSEFSVHNRSLLCLLTSIHIFLPTRLDCVFLFQISDLGSEKMESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLSPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMGNFRVAYGNNDDNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYRELYRDQVVHNDVTWQSTTPELDDSMAFGYGLGNLASDDPTKSSESSLANYDISSRQSTRGIAA
Homology
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match:
Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 2.5e-63
Identity = 153/390 (39.23%), Postives = 213/390 (54.62%), Query Frame = 0
Query: 57 MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
M+SD GKLF+GGISW+TDE++LR++F NYGEV +A++MRD+ TGR RGFGFV+F+DP V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNR--NIGSS-IQGSPSSGRTKKIFVGGLAST 176
+RV+ EKH ID R V+ K+A+ +++Q + R N+ +S G + +TKKIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 177 VTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMV 236
+T+ +F++YF+ +G +TDV +MYD +T RPRGFGF+++DSE+ VD VLHKTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 237 EVKRAIPKEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFL 296
EVKRA+PK+ PG G S G Y QGY + G R
Sbjct: 181 EVKRALPKDANPGGG---------GRSMGGGGSGGY-QGYGGNESSYDGRMDSNRFLQHQ 240
Query: 297 SPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYSGGNGR 356
S G+P G G GYG N Y G +GG G
Sbjct: 241 SVGNGLPSYG---SSGYGAGYGNGSN---------------GAGYGAYGGYTGSAGGYGA 300
Query: 357 GDSPLNSSTWNVWGNGSMSTASV-------NSSVSGMGNFRVAYGNNDDNWNLPAVS--- 416
G + +T N+ G G S+ V + SG GN G + +P +
Sbjct: 301 GATAGYGAT-NIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPT 360
Query: 417 ---NHVGGENVPDNGYAVRDNGVGFRGGYG 431
+ + GY+ D+G G + YG
Sbjct: 361 QSPSGYSNQGYGYGGYSGSDSGYGNQAAYG 361
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match:
Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)
HSP 1 Score: 194.9 bits (494), Expect = 2.3e-48
Identity = 113/278 (40.65%), Postives = 155/278 (55.76%), Query Frame = 0
Query: 60 DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
++GKLF+GG+ W T +E LR YF YGEVV+ VIM+D+TT ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPS-SGRTKKIFVGGLASTVTEA 179
+ + H +DGR ++ K P+ Q R +G S S ++ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 180 DFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKR 239
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E+ VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 240 AIP---KEQTPGPNRSPLVGYNFGMSRASGFLN----NYTQGYNM--------SPLGGIG 299
A P K Q PG + G S A+G+ + QGY +GG G
Sbjct: 188 AEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
Query: 300 MRSDGRLS-----PFLSPRTGVPPLGLNFEQGLRQGYG 316
GR + PF S PP G QG QGYG
Sbjct: 248 PPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match:
Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 2.5e-47
Identity = 111/278 (39.93%), Postives = 155/278 (55.76%), Query Frame = 0
Query: 60 DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
++GKLF+GG+ W T +E LR YF YGEVV+ VIM+D+TT ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPS-SGRTKKIFVGGLASTVTEA 179
+ + H +DGR ++ K P+ Q R +G S + ++ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 180 DFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVKR 239
+ ++YF +FG +T+VV++YD QRPRGFGFIT++ E+ VD+ ++ FH++ GK VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 240 AIP---KEQTPGPNRSPLVGYNFGMSRASGFLN----NYTQGYNM--------SPLGGIG 299
A P K Q PG + G + A+G+ + QGY +GG G
Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
Query: 300 MRSDGRLS-----PFLSPRTGVPPLGLNFEQGLRQGYG 316
GR + PF S PP G QG QGYG
Sbjct: 248 PPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match:
Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 5.6e-47
Identity = 104/250 (41.60%), Postives = 148/250 (59.20%), Query Frame = 0
Query: 60 DLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVAERV 119
++GKLF+GG+ W T +E LR YF YGEVV+ VIM+D+TT ++RGFGFV F DP V
Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
Query: 120 ILEK-HIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSP--SSGRTKKIFVGGLASTVTE 179
+ + H +DGR ++ K P+ Q +R Q P + R+ KIFVGG+ E
Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGE 127
Query: 180 ADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEVK 239
+ ++YF++FG +T+VV++YD QRPRGFGFIT++ E+ VD+ ++ FH++ GK VEVK
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 240 RAIP---KEQTPGPNRSPLVGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFL 299
RA P K QTPGP S G S A+G+ Q + G+ M + + +
Sbjct: 188 RAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQGMWMPTGQTIGGYG 247
Query: 300 SP--RTGVPP 302
P R G PP
Sbjct: 248 QPAGRGGPPP 257
BLAST of CmaCh16G009410 vs. ExPASy Swiss-Prot
Match:
Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)
HSP 1 Score: 185.3 bits (469), Expect = 1.8e-45
Identity = 91/196 (46.43%), Postives = 127/196 (64.80%), Query Frame = 0
Query: 48 QISDLGSEKMESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGF 107
++ ++ +D GK+FIGG+SW T E LRDYFG YG++ EA++M+D TT R+RGFGF
Sbjct: 15 ELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGF 74
Query: 108 VVFADPVVAERVILE-KHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSGRTKKIF 167
V F+DP ++V+ + H +DG+ V+ K A P+ + RTKKIF
Sbjct: 75 VTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKM-------------VTRTKKIF 134
Query: 168 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 227
VGGL++ T D + YF+QFG I D ++M+D T R RGFGF+T+ SE+VVD+V FH
Sbjct: 135 VGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFH 194
Query: 228 ELNGKMVEVKRAIPKE 243
E+N KMVE K+A PKE
Sbjct: 195 EINNKMVECKKAQPKE 197
BLAST of CmaCh16G009410 vs. TAIR 10
Match:
AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 444.5 bits (1142), Expect = 1.2e-124
Identity = 257/493 (52.13%), Postives = 328/493 (66.53%), Query Frame = 0
Query: 57 MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
M+SD GKLFIGGISWDT+EERL++YF ++GEV+EAVI++DRTTGRARGFGFVVFADP VA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSS-GRTKKIFVGGLASTVT 176
E VI EKH IDGR VEAKKAVP+DDQNM+NR+ SSIQGSP GRT+KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 177 EADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEV 236
E+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITYDSEE V++VL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 237 KRAIPKEQTPGPNRSPL-VGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLS 296
KRA+PKE +PGP+RSPL GY++G++R + LN Y QG+N + +GG G+R DGR SP +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 297 PRTGVP------PLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYS 356
R+G + +NF+QGL G+ N + + +S YY GN+NR+ +GY
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 357 GGNGRGDSPLNSS-TWNVWGN-----------GSMSTASVNSSVSGMGNFRVAYGNNDDN 416
GGNG G+S SS T N+WGN S S + S SG +GN+ N
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360
Query: 417 WNLPAVSNH-VGGENVPDNGYAVRDNGVGF-RGGY-----GGNVVSNATRKAFAETTN-- 476
W P N+ V ENV ++G G GGY G N + ++ + A TN
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420
Query: 477 GFERS-YRELYRDQVVHNDVTWQSTTPELDDSMAFGYGL-GNLASDDPT--KSSESSLAN 517
G++ + E Y + V++D TW+S TPE + F YG+ G + S D + SS + +
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480
BLAST of CmaCh16G009410 vs. TAIR 10
Match:
AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 441.4 bits (1134), Expect = 9.8e-124
Identity = 255/491 (51.93%), Postives = 326/491 (66.40%), Query Frame = 0
Query: 57 MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
M+SD GKLFIGGISWDT+EERL++YF ++GEV+EAVI++DRTTGRARGFGFVVFADP VA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSS-GRTKKIFVGGLASTVT 176
E VI EKH IDGR VEAKKAVP+DDQNM+NR+ SSIQGSP GRT+KIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 177 EADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMVEV 236
E+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITYDSEE V++VL KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 237 KRAIPKEQTPGPNRSPL-VGYNFGMSRASGFLNNYTQGYNMSPLGGIGMRSDGRLSPFLS 296
KRA+PKE +PGP+RSPL GY++G++R + LN Y QG+N + +GG G+R DGR SP +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 297 PRTGVP------PLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSSYYNGNSNRYIAPIGYS 356
R+G + +NF+QGL G+ N + + +S YY GN+NR+ +GY
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 357 GGNGRGDSPLNSS-TWNVWGN-----------GSMSTASVNSSVSGMGNFRVAYGNNDDN 416
GGNG G+S SS T N+WGN S S + S SG +GN+ N
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360
Query: 417 WNLPAVSNH-VGGENVPDNGYAVRDNGVGF-RGGY-----GGNVVSNATRKAFAETTN-- 476
W P N+ V ENV ++G G GGY G N + ++ + A TN
Sbjct: 361 WGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNT 420
Query: 477 GFERS-YRELYRDQVVHNDVTWQSTTPELDDSMAFGYGL-GNLASDDPT--KSSESSLAN 515
G++ + E Y + V++D TW+S TPE + F YG+ G + S D + SS + +
Sbjct: 421 GYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGS 480
BLAST of CmaCh16G009410 vs. TAIR 10
Match:
AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 422.9 bits (1086), Expect = 3.6e-118
Identity = 264/490 (53.88%), Postives = 317/490 (64.69%), Query Frame = 0
Query: 55 EKME--SDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFAD 114
+KME SDLGKLFIGGISWDTDEERL++YFG YG++VEAVIMRDRTTGRARGFGF+VFAD
Sbjct: 6 QKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
Query: 115 PVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSG------RTKKIF 174
P VAERVI++KHIIDGRTVEAKKAVP+DDQ +L R+ SPS G RTKKIF
Sbjct: 66 PSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIF 125
Query: 175 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 234
VGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DSEE VD VLHKTFH
Sbjct: 126 VGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH 185
Query: 235 ELNGKMVEVKRAIPKE-QTPGPNRSPLVGY--NFGM----SRASGFLNNYTQGYNMSPLG 294
ELNGKMVEVKRA+PKE + PNRSPL+GY N+G+ S A+ + N++ GYN + LG
Sbjct: 186 ELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG 245
Query: 295 GIGMRSDGRLSPFLSPRTGVPP--LGLNFEQGLRQGY-GRTMNIMNSQAQEQMLSSYYNG 354
S GR SP S R LGLN E L + G T+ + Y+N
Sbjct: 246 -----SAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYSRIPGNQ-----YFNS 305
Query: 355 NS-NRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNND 414
S NRY +PIGY+ RGDS N S ++WGN S S SG G N V+ GNN
Sbjct: 306 ASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRSDS--------SGPGWNLGVSVGNNR 365
Query: 415 DNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYR 474
NW L +V V DN NG G G G S + +FA TNGF+ S
Sbjct: 366 GNWGLSSV--------VSDN------NGYGRSYGAG----SGLSGLSFAGNTNGFDGSIG 425
Query: 475 ELYRDQVVHNDVTWQSTTP------ELDD-SMAFGYGLGNLASDDPTKSSESSLANYDIS 518
ELYR V++D TWQ + P ELD S ++G+G+ N+ SD +SE NY++
Sbjct: 426 ELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVG 455
BLAST of CmaCh16G009410 vs. TAIR 10
Match:
AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 422.9 bits (1086), Expect = 3.6e-118
Identity = 264/490 (53.88%), Postives = 317/490 (64.69%), Query Frame = 0
Query: 55 EKME--SDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFAD 114
+KME SDLGKLFIGGISWDTDEERL++YFG YG++VEAVIMRDRTTGRARGFGF+VFAD
Sbjct: 3 QKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFAD 62
Query: 115 PVVAERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSPSSG------RTKKIF 174
P VAERVI++KHIIDGRTVEAKKAVP+DDQ +L R+ SPS G RTKKIF
Sbjct: 63 PSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIF 122
Query: 175 VGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFH 234
VGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DSEE VD VLHKTFH
Sbjct: 123 VGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH 182
Query: 235 ELNGKMVEVKRAIPKE-QTPGPNRSPLVGY--NFGM----SRASGFLNNYTQGYNMSPLG 294
ELNGKMVEVKRA+PKE + PNRSPL+GY N+G+ S A+ + N++ GYN + LG
Sbjct: 183 ELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLG 242
Query: 295 GIGMRSDGRLSPFLSPRTGVPP--LGLNFEQGLRQGY-GRTMNIMNSQAQEQMLSSYYNG 354
S GR SP S R LGLN E L + G T+ + Y+N
Sbjct: 243 -----SAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYSRIPGNQ-----YFNS 302
Query: 355 NS-NRYIAPIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNND 414
S NRY +PIGY+ RGDS N S ++WGN S S SG G N V+ GNN
Sbjct: 303 ASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRSDS--------SGPGWNLGVSVGNNR 362
Query: 415 DNWNLPAVSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYR 474
NW L +V V DN NG G G G S + +FA TNGF+ S
Sbjct: 363 GNWGLSSV--------VSDN------NGYGRSYGAG----SGLSGLSFAGNTNGFDGSIG 422
Query: 475 ELYRDQVVHNDVTWQSTTP------ELDD-SMAFGYGLGNLASDDPTKSSESSLANYDIS 518
ELYR V++D TWQ + P ELD S ++G+G+ N+ SD +SE NY++
Sbjct: 423 ELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASEGYSGNYNVG 452
BLAST of CmaCh16G009410 vs. TAIR 10
Match:
AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 398.3 bits (1022), Expect = 9.5e-111
Identity = 248/483 (51.35%), Postives = 308/483 (63.77%), Query Frame = 0
Query: 57 MESDLGKLFIGGISWDTDEERLRDYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPVVA 116
MESDLGKLFIGGISWDTDEERLRDYF NYG+VVEAVIMRDR TGRARGFGF+VFADP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 117 ERVILEKHIIDGRTVEAKKAVPKDDQNMLNRNIGSSIQGSP---SSGRTKKIFVGGLAST 176
ERVI++KHIIDGRTVEAKKAVP+DDQ +L R+ SP GRTKKIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 177 VTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEEVVDRVLHKTFHELNGKMV 236
+TE +F+ YFDQFGTI DVVVMYDH+TQRPRGFGFIT+DS++ VDRVLHKTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 237 EVKRAIPKEQTPGPN-RSPL---VGYNFGMSR--ASGFLNNYTQGYNM-SPLGGIGMRSD 296
EVKRA+PKE +P N RSPL V Y G +R A+ + NN+ G + LG +G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPGPGFYNSLGPVGR--- 240
Query: 297 GRLSPFL-SPRTGVPPLGLNFEQGLRQGYGRTMNIMNSQAQEQMLSS--YYNGNS-NRYI 356
R SP + S R V GL L + + +S + S Y+NG S NRY
Sbjct: 241 -RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYT 300
Query: 357 APIGYSGGNGRGDSPLNSSTWNVWGNGSMSTASVNSSVSGMG-NFRVAYGNNDDNWNLPA 416
+PIG++ R +SP NS+ ++WGN + +G G N V+ GNN NW LP+
Sbjct: 301 SPIGHN----RTESPYNSNNRDLWGN--------RTDTAGPGWNLNVSNGNNRGNWGLPS 360
Query: 417 VSNHVGGENVPDNGYAVRDNGVGFRGGYGGNVVSNATRKAFAETTNGFERSYRELYRDQV 476
S AV ++ GF YG + S + F NGFE S ELYR
Sbjct: 361 SS-------------AVSNDNNGFGRNYGTS--SGLSSSPF----NGFEGSIGELYRGGS 420
Query: 477 VHNDVTWQ------STTPELDD-SMAFGYGLGNLASDDPTKSSESSLANYDISSRQSTRG 518
V++D TWQ ++ ELD+ S A+GY + N+ SD E+ +Y++ +RQ+ RG
Sbjct: 421 VYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 448
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8W034 | 2.5e-63 | 39.23 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... | [more] |
Q9JII5 | 2.3e-48 | 40.65 | DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2 | [more] |
Q96EP5 | 2.5e-47 | 39.93 | DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1 | [more] |
Q98SJ2 | 5.6e-47 | 41.60 | DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1 | [more] |
Q9VVE5 | 1.8e-45 | 46.43 | RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... | [more] |
Match Name | E-value | Identity | Description | |
AT3G07810.1 | 1.2e-124 | 52.13 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT3G07810.2 | 9.8e-124 | 51.93 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT4G26650.1 | 3.6e-118 | 53.88 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT4G26650.2 | 3.6e-118 | 53.88 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |
AT5G55550.1 | 9.5e-111 | 51.35 | RNA-binding (RRM/RBD/RNP motifs) family protein | [more] |