CmaCh16G009340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G009340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pectin lyase-like superfamily protein, putative
Location	Cma_Chr16: 7156622 .. 7158065 (+)
RNA-Seq Expression	CmaCh16G009340
Synteny	CmaCh16G009340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATATCATCAGAAATTGGATGCGTAGTGTTCATTACTATACTACTTTGCCTTTTCCAATCTTATGCTCAAAGTAAAGTGTTCGATATTACGCAATACGGTGCAACACCGGATGAAAGAACAGATAGCACTAAGGTACCTTCAAAATTTTAATTTTGAGCTATTTTGGTGAAACATTCTAACGTTACACAAATCATTCCATCTTCAATGAGAGTATTAAATATGTAGGGTTTGAGTATGGCATGGAGGGATGCGTGTGCAAATAAGGGAGGTGGTGTGGTTTTAGTACCATCAATAGGGAGGTTCTTGGTTTTGCCCGTGTTGCTTCAAGGTCCTTGCAATGGCCTCATTCAACTGCAAATTAATGGTGATCTCTTGGCTTCTTCGGACAAGGCTTTCGCCACAGGTTACTCTTGGTTCAAATTCTATCGAGTCACCAACTTGGTCATCCAGGGTCTAGGCCGCTTCCTTGGCCAAGGTGAAACCGCTTGGCCTTACAATACCTGCAAACATGGGCCATGCACTCGCCTTCCTATTGTGAGTCTATAAGCTATCATTTGTTTTCGATATATTTGTTGTAATATAACGTTTGATTTCTTGTAGACTATAAGTCTCCAATCAATCGATATTGTGAGGATTACGAACATAACATCGTTAAATAGCAAGCTCGGCCATTTCAAAGTGCATGGATGCAATGATGTAGTGTTTGATAACGTTACAGTGATAGCACCAGAAGATAGTCCTAACACGGATGGCATCCACATTTCCAAGTCGACGGGTGTCACCATCATGAACTCAATCATCGCCACCGGAGACGATTGCATCTCATTTGGCCCTGGAAGTAAGGACGTTAACATAACTAATGTTCATTGTGGTCCTGGCCATGGAATTAGTATCGGCAGTCTTGGAAAGTACCAAAATGAACCAAATATCGATGGAATCACAGTACGAGACTCCAAATTCGTTGGCACGAAAAATGGTATTCAGATCAAAACATGGTCAAAATCATATTCAAGTGTGGTTAGCAACCTTACATTTGTAAATCTCAAAATGTATAATGTTGAAAGCCCTATCATAATCAATCAAAACTACTGCCCGCACAATGCTTGCAATAACAATAAAGTGGTACGAATCTTGAAATTTGTTTGGCTTCGATCAAAGTTGATATTACATTATAACGAATGATTCTAAATCGAAATGTGAATGATTGCAGAGCGTGTCAAGAATACAAATCAAAGACGTCAAGTATGAAAACATAAGGGGAACATCAGCAAAACAATTGGCAGTAACTTTGAATTGCAGCCAAGTTGTTCCATGCCAAGGTATAGTGCTAAACAACATCAACCTAGCCTTCAATGGCACTGGCTCTTCAACTTCCATTTGTCAAAACATCAAGGGTTCTGCTTCTGGCCCTCAATTACCTCCCTCTTGTCTTTAA

mRNA sequence

ATGGGTTTGATATCATCAGAAATTGGATGCGTAGTGTTCATTACTATACTACTTTGCCTTTTCCAATCTTATGCTCAAAGTAAAGTGTTCGATATTACGCAATACGGTGCAACACCGGATGAAAGAACAGATAGCACTAAGGGTTTGAGTATGGCATGGAGGGATGCGTGTGCAAATAAGGGAGGTGGTGTGGTTTTAGTACCATCAATAGGGAGGTTCTTGGTTTTGCCCGTGTTGCTTCAAGGTCCTTGCAATGGCCTCATTCAACTGCAAATTAATGGTGATCTCTTGGCTTCTTCGGACAAGGCTTTCGCCACAGGTTACTCTTGGTTCAAATTCTATCGAGTCACCAACTTGGTCATCCAGGGTCTAGGCCGCTTCCTTGGCCAAGGTGAAACCGCTTGGCCTTACAATACCTGCAAACATGGGCCATGCACTCGCCTTCCTATTACTATAAGTCTCCAATCAATCGATATTGTGAGGATTACGAACATAACATCGTTAAATAGCAAGCTCGGCCATTTCAAAGTGCATGGATGCAATGATGTAGTGTTTGATAACGTTACAGTGATAGCACCAGAAGATAGTCCTAACACGGATGGCATCCACATTTCCAAGTCGACGGGTGTCACCATCATGAACTCAATCATCGCCACCGGAGACGATTGCATCTCATTTGGCCCTGGAAGTAAGGACGTTAACATAACTAATGTTCATTGTGGTCCTGGCCATGGAATTAGTATCGGCAGTCTTGGAAAGTACCAAAATGAACCAAATATCGATGGAATCACAGTACGAGACTCCAAATTCGTTGGCACGAAAAATGGTATTCAGATCAAAACATGGTCAAAATCATATTCAAGTGTGGTTAGCAACCTTACATTTGTAAATCTCAAAATGTATAATGTTGAAAGCCCTATCATAATCAATCAAAACTACTGCCCGCACAATGCTTGCAATAACAATAAAGTGAGCGTGTCAAGAATACAAATCAAAGACGTCAAGTATGAAAACATAAGGGGAACATCAGCAAAACAATTGGCAGTAACTTTGAATTGCAGCCAAGTTGTTCCATGCCAAGGTATAGTGCTAAACAACATCAACCTAGCCTTCAATGGCACTGGCTCTTCAACTTCCATTTGTCAAAACATCAAGGGTTCTGCTTCTGGCCCTCAATTACCTCCCTCTTGTCTTTAA

Coding sequence (CDS)

ATGGGTTTGATATCATCAGAAATTGGATGCGTAGTGTTCATTACTATACTACTTTGCCTTTTCCAATCTTATGCTCAAAGTAAAGTGTTCGATATTACGCAATACGGTGCAACACCGGATGAAAGAACAGATAGCACTAAGGGTTTGAGTATGGCATGGAGGGATGCGTGTGCAAATAAGGGAGGTGGTGTGGTTTTAGTACCATCAATAGGGAGGTTCTTGGTTTTGCCCGTGTTGCTTCAAGGTCCTTGCAATGGCCTCATTCAACTGCAAATTAATGGTGATCTCTTGGCTTCTTCGGACAAGGCTTTCGCCACAGGTTACTCTTGGTTCAAATTCTATCGAGTCACCAACTTGGTCATCCAGGGTCTAGGCCGCTTCCTTGGCCAAGGTGAAACCGCTTGGCCTTACAATACCTGCAAACATGGGCCATGCACTCGCCTTCCTATTACTATAAGTCTCCAATCAATCGATATTGTGAGGATTACGAACATAACATCGTTAAATAGCAAGCTCGGCCATTTCAAAGTGCATGGATGCAATGATGTAGTGTTTGATAACGTTACAGTGATAGCACCAGAAGATAGTCCTAACACGGATGGCATCCACATTTCCAAGTCGACGGGTGTCACCATCATGAACTCAATCATCGCCACCGGAGACGATTGCATCTCATTTGGCCCTGGAAGTAAGGACGTTAACATAACTAATGTTCATTGTGGTCCTGGCCATGGAATTAGTATCGGCAGTCTTGGAAAGTACCAAAATGAACCAAATATCGATGGAATCACAGTACGAGACTCCAAATTCGTTGGCACGAAAAATGGTATTCAGATCAAAACATGGTCAAAATCATATTCAAGTGTGGTTAGCAACCTTACATTTGTAAATCTCAAAATGTATAATGTTGAAAGCCCTATCATAATCAATCAAAACTACTGCCCGCACAATGCTTGCAATAACAATAAAGTGAGCGTGTCAAGAATACAAATCAAAGACGTCAAGTATGAAAACATAAGGGGAACATCAGCAAAACAATTGGCAGTAACTTTGAATTGCAGCCAAGTTGTTCCATGCCAAGGTATAGTGCTAAACAACATCAACCTAGCCTTCAATGGCACTGGCTCTTCAACTTCCATTTGTCAAAACATCAAGGGTTCTGCTTCTGGCCCTCAATTACCTCCCTCTTGTCTTTAA

Protein sequence

MGLISSEIGCVVFITILLCLFQSYAQSKVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGLIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTCKHGPCTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVRDSKFVGTKNGIQIKTWSKSYSSVVSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGSSTSICQNIKGSASGPQLPPSCL

Homology

[Close]

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.2e-87
Identity = 164/373 (43.97%), Postives = 232/373 (62.20%), Query Frame = 0


Query: 25  AQSKVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPC 84
           +   VF++  YGA      D ++ +  AW+ ACA++G   VL+P  G + +  V +QGPC
Sbjct: 5   SSGSVFNVNDYGA--KGAGDISQAVMKAWKAACASQGPSTVLIPK-GNYNMGEVAMQGPC 64

Query: 85  NG-LIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTCKHG 144
            G  I  QI+G + A +D +      W  FYR+  L + G G   GQG+TAW  N C   
Sbjct: 65  KGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKN 124

Query: 145 P-CTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGI 204
           P C    + +    +    + +ITSLNSK+ H  V  C D+ F +VTV AP  S NTDGI
Sbjct: 125 PNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGI 184

Query: 205 HISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDG 264
           H+  S GVTI N+ IATGDDCIS GPGS++V IT V+CGPGHGISIGSLG+Y NE  + G
Sbjct: 185 HVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRG 244

Query: 265 ITVRDSKFVGTKNGIQIKTWSKSYSSVVSNLTFVNLKMYNVESPIIINQNYCPHNACNNN 324
           ITV+   F GT NG+++KTW  S     ++LTF +L M NV++P+I++Q YCP+  C  +
Sbjct: 245 ITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQC--S 304

Query: 325 KVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGS-STSIC 384
           + + SRI++ ++ + NIRGTS  ++AV + CS  +PC  + +  INL++ G G  +TS C
Sbjct: 305 RQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTC 364

Query: 385 QNIKGSASGPQLP 395
            N+K + SG Q+P
Sbjct: 365 SNVKPTFSGKQVP 372

[Close]

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 5.2e-85
Identity = 160/365 (43.84%), Postives = 233/365 (63.84%), Query Frame = 0


Query: 30  FDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGLIQ 89
           FDIT+ GA+ + +TDSTK +  AW  AC   G   +L+P  G FLV P+   GPC G + 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPK-GDFLVGPLNFTGPCKGDVT 100

Query: 90  LQINGDLLASSD-KAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTC-KHGPCTR 149
           +Q+NG+LLA++D   +    +W +  RV NLVI G G+  GQG   W  N+C K   C  
Sbjct: 101 IQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCKI 160

Query: 150 LPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISKS 209
           LP ++ +  ++   ++ IT LNSK  H  ++ C D++  +V V AP DSPNTDGIH+  S
Sbjct: 161 LPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDS 220

Query: 210 TGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVRD 269
           +GVTI N++I  GDDCIS GPG+  VNIT V CGPGHGISIGSLG+Y++E ++  I V+D
Sbjct: 221 SGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKD 280

Query: 270 SKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVSV 329
                T NG++IK +  + S +  S + + N+KM +   PIII+  YCP+  C  N    
Sbjct: 281 CTLKKTANGVRIKAYEDAASVLTASKIHYENIKMEDSGYPIIIDMKYCPNKLCTAN--GA 340

Query: 330 SRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGSST-SICQNIK 389
           S++ +KDV ++NI GTS+   AV L C+  +PC G+ ++++N+ ++GT + T ++C+N K
Sbjct: 341 SKVTVKDVTFKNITGTSSTPEAVNLLCTAKIPCTGVTMDDVNIKYSGTNNKTMAVCKNAK 400

Query: 390 GSASG 391
           GSA G
Sbjct: 401 GSAKG 402

[Close]

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-82
Identity = 157/365 (43.01%), Postives = 231/365 (63.29%), Query Frame = 0


Query: 30  FDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGLIQ 89
           FDIT+ GA+ + +TDSTK +  AW  AC   G   +L+P  G FLV  +   GPC G + 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPK-GDFLVGQLNFTGPCKGDVT 100

Query: 90  LQINGDLLASSD-KAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTC-KHGPCTR 149
           +Q++G+LLA++D   +    +W +  RV NLVI G G   GQG   W  N+C K   C  
Sbjct: 101 IQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKI 160

Query: 150 LPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISKS 209
           LP ++ +  ++   ++ +T LNSK  H  ++ C D++  +VTV AP DSPNTDGIH+  S
Sbjct: 161 LPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDS 220

Query: 210 TGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVRD 269
           +G+TI N++I  GDDCIS GPG+  VNIT V CGPGHGISIGSLG+Y++E ++  I V+D
Sbjct: 221 SGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKD 280

Query: 270 SKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVSV 329
                T  G++IK +  + S + VS + + N+KM +  +PI I+  YCP+  C  N    
Sbjct: 281 CTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTAN--GA 340

Query: 330 SRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGSST-SICQNIK 389
           S++ +KDV ++NI GTS+   AV+L C+  VPC G+ ++++N+ ++GT + T +IC N K
Sbjct: 341 SKVTVKDVTFKNITGTSSTPEAVSLLCTAKVPCTGVTMDDVNVEYSGTNNKTMAICTNAK 400

Query: 390 GSASG 391
           GS  G
Sbjct: 401 GSTKG 402

[Close]

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-81
Identity = 155/357 (43.42%), Postives = 228/357 (63.87%), Query Frame = 0


Query: 44  DSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGLIQLQINGDLLASSDKA 103
           DST+ L+ AW++ACA+     +LVP  G F V  + L+GPC   I LQ+ G L A +D +
Sbjct: 1   DSTQALTTAWKEACASASPSTILVPK-GNFAVGLITLEGPCKSSIGLQLQGTLKAPADPS 60

Query: 104 FATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTC-KHGP-CTRLPITISLQSIDIVR 163
              G  W    ++  L I G G F GQG++AW  N C K+GP C  L + + L ++    
Sbjct: 61  KIKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSI 120

Query: 164 ITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISKSTGVTIMNSIIATGD 223
           + ++T+L+SK  H  V GC ++ F+   + A E S NTDGIHI +S GV I+N+ I TGD
Sbjct: 121 LRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGD 180

Query: 224 DCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVRDSKFVGTKNGIQIKT 283
           DCIS G GSK++NITN+ CGPGHGIS+GSLG+Y+NE ++ GI V++    G++NG++IKT
Sbjct: 181 DCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKT 240

Query: 284 WSKSYSSVVSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVSVSRIQIKDVKYENIRG 343
           W KS     S + F ++ M +V +PI+I+Q YCP+N C       S +++  + ++NI+G
Sbjct: 241 WPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAE--VPSSVKLSKISFKNIKG 300

Query: 344 TSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGS-STSICQNIKGSASGPQLPPSC 398
           TS  + AV L CS+  PC G+ L +I+L ++G G  +TS+C+NIK +  G Q+P  C
Sbjct: 301 TSTTKEAVKLVCSKSFPCNGVELADIDLTYSGKGGPATSVCENIKPTIKGKQIPAIC 354

[Close]

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot
Match: P35338 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.0e-81
Identity = 155/365 (42.47%), Postives = 230/365 (63.01%), Query Frame = 0


Query: 30  FDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGLIQ 89
           FDIT+ GA+ + +TDSTK +  AW  AC   G   +L+P  G FLV  +   GPC G + 
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPK-GDFLVGQLNFTGPCKGDVT 100

Query: 90  LQINGDLLASSD-KAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTC-KHGPCTR 149
           +Q++G+LLA++D   +    +W +  RV NLVI G G   GQG   W  N+C K   C  
Sbjct: 101 IQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCKI 160

Query: 150 LPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISKS 209
           LP ++ +  ++   ++ +T LNSK  H  ++ C +++  +VTV AP DSPNTDGIH+  S
Sbjct: 161 LPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDS 220

Query: 210 TGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVRD 269
           +G+TI N++I  GDDCIS GPG+  VNIT V CGPGHGISIGSLG+Y++E ++  I V+D
Sbjct: 221 SGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKD 280

Query: 270 SKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVSV 329
                T  G++IK +  + S + VS + + N+KM +  +PI I+  YCP+  C  N    
Sbjct: 281 CTLKKTMFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTAN--GA 340

Query: 330 SRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNGTGSST-SICQNIK 389
           S++ +KDV ++NI GTS+   A++L C+  VPC G  ++++N+ ++GT + T +IC N K
Sbjct: 341 SKVTVKDVTFKNITGTSSTPEAISLLCTAKVPCTGATMDDVNVEYSGTNNKTMAICTNAK 400

Query: 390 GSASG 391
           GS  G
Sbjct: 401 GSTKG 402

[Close]

BLAST of CmaCh16G009340 vs. TAIR 10
Match: AT2G33160.1 (glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein )

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-85
Identity = 163/376 (43.35%), Postives = 226/376 (60.11%), Query Frame = 0


Query: 26  QSKVFDITQYGATPDERTDSTKGLSMAWRDACA-NKGGGVVLVPSIGRFLVLPVLLQGPC 85
           Q K+FD+  YGA  D + D+    + AW +AC  + G   V +PS G F +  V   GPC
Sbjct: 28  QPKIFDVRNYGARADSQRDNAFAFTKAWNEACQWSYGRSTVYIPS-GIFYLRQVTFSGPC 87

Query: 86  NGLIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTC-KHG 145
              I   I G LLA  +        W  F  V NL + G G   GQG  +WP N C K+ 
Sbjct: 88  KSSITFFIRGTLLAPRNPYAINQEEWILFKYVDNLTVTGGGLLDGQGSYSWPLNDCNKNT 147

Query: 146 PCTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIH 205
            C  L + I    +   +I  + S+NSK+GHF +    D     VT+ AP DSPNTDGI 
Sbjct: 148 NCRTLAMNIGFAFVKSSKINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGIK 207

Query: 206 ISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGI 265
           I KS+ + I N  I TGDDCI+   G+ +++I++V CGPGHGIS+GSLG+Y+ E N+ G+
Sbjct: 208 IGKSSHMQIYNVTIGTGDDCIAILDGTSNLDISDVRCGPGHGISVGSLGRYKEEKNVQGL 267

Query: 266 TVRDSKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVESPIIINQNYCPHNACNNN 325
           TVR+S   GT +G++IKTW+KS S + VSN  + N++M NV +PI+I+Q YCPH  C++ 
Sbjct: 268 TVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINVGNPIVIDQQYCPHGQCDSP 327

Query: 326 KVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNG-TGSSTSIC 385
               S +QIKDVKY NI GTS  + A+ + CS+  PCQ + L+NINL + G  G  T++C
Sbjct: 328 GKYASHVQIKDVKYNNIWGTSTSKEALKMQCSKTFPCQDVELSNINLHYVGRDGLVTALC 387

Query: 386 QNIKGSASGPQLPPSC 398
           +N+ GS  G  +P +C
Sbjct: 388 ENVGGSIRGKIVPANC 402

[Close]

BLAST of CmaCh16G009340 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 310.1 bits (793), Expect = 2.6e-84
Identity = 161/396 (40.66%), Postives = 235/396 (59.34%), Query Frame = 0


Query: 13  FITILLCLF------QSYAQSKVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVL 72
           F  +  CLF      +S  + KVF++ ++GA PD +TD+    +  W  AC    G   +
Sbjct: 8   FNALCFCLFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKI 67

Query: 73  VPSIGRFLVLPVLLQGPCNGLIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGR 132
               G F +  V   GPC   I+  I+G LLA ++ +     +W  F  + NL I G G 
Sbjct: 68  YVPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGT 127

Query: 133 FLGQGETAWPYNTCKHGP-CTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVF 192
             GQG+ +WP+N C   P C +L +T+    ++   I +ITSLNSK+GHF     +    
Sbjct: 128 LDGQGKQSWPHNDCHTNPNCPKLAMTMGFAFVNNSNIKDITSLNSKMGHFNFFSVHHFNI 187

Query: 193 DNVTVIAPEDSPNTDGIHISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHG 252
             VT+ AP DSPNTDGI +   + + I ++ I TGDDCI+   G+ ++NI+NV+CGPGHG
Sbjct: 188 TGVTITAPGDSPNTDGIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHG 247

Query: 253 ISIGSLGKYQNEPNIDGITVRDSKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVE 312
           IS+GSLGK ++E ++  + VRD  F GT +GI+IK W  S S + VSN  + N++M +V 
Sbjct: 248 ISVGSLGKNKDEKDVKDLIVRDVIFNGTSDGIRIKNWESSASKILVSNFVYENIQMIDVG 307

Query: 313 SPIIINQNYCPHNACNNNKVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVL 372
            PI I+Q YCPH  C + +   S +QI+++K +NI GTS  ++AV L CS++ PC+ + L
Sbjct: 308 KPINIDQKYCPHPPCEHERKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVEL 367

Query: 373 NNINLAFNGT--GSSTSICQNIKGSASGPQLPPSCL 399
            +IN+  NG   GSSTS+C+N+ G A G   PP CL
Sbjct: 368 IDINIKQNGVKDGSSTSVCENVDGFARGKMFPPHCL 403

[Close]

BLAST of CmaCh16G009340 vs. TAIR 10
Match: AT1G78400.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 305.4 bits (781), Expect = 6.5e-83
Identity = 167/374 (44.65%), Postives = 223/374 (59.63%), Query Frame = 0


Query: 28  KVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPSIGRFLVLPVLLQGPCNGL 87
           KVFD+  YGA  D +TD+T   + AW+DAC  KG   V +P  G F +  V   GPC   
Sbjct: 33  KVFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIP-FGTFYLGAVAFTGPCKSR 92

Query: 88  IQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGRFLGQGETAWPYNTCKH-GPCT 147
           I   I G LLA  D       SW  F  V  L + G G   GQG  +WP N C+    C 
Sbjct: 93  ISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNCR 152

Query: 148 RLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNVTVIAPEDSPNTDGIHISK 207
            LP+ +  Q +   R+T I S+NSK+GH             V + AP DSPNTDGI I  
Sbjct: 153 ALPMNMGFQFVRFSRLTRIKSINSKMGHLNFFSVQHFDITRVNIKAPGDSPNTDGIKIGS 212

Query: 208 STGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISIGSLGKYQNEPNIDGITVR 267
           S  + I +  IATGDDCI+   G+ +++I  V+CGPGHGIS+GSLGK++ E ++ G+ VR
Sbjct: 213 SNHMKIHHVDIATGDDCIAILSGTFNLDINKVNCGPGHGISVGSLGKFKGEKSVQGLIVR 272

Query: 268 DSKFVGTKNGIQIKTW-SKSYSSVVSNLTFVNLKMYNVESPIIINQNYCPHNACNNNKVS 327
           +S F GT NG++IKTW S    ++VSN  F NL+M +V+SPI I+Q YCP+  C+    S
Sbjct: 273 NSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDVQSPINIDQRYCPNPPCSFQ--S 332

Query: 328 VSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNINLAFNG-TGSSTSICQNI 387
            S+IQI+DVK++NI GTS  + AV L CS+ VPC+ + L NIN+   G  G +TS+C+N+
Sbjct: 333 FSKIQIRDVKFQNIWGTSTAKEAVKLQCSKNVPCKNVQLFNINIVHRGRDGPATSVCENV 392

Query: 388 KGSASGPQLPPSCL 399
            G   G   PPSC+
Sbjct: 393 GGWIGGKISPPSCI 403

[Close]

BLAST of CmaCh16G009340 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 305.1 bits (780), Expect = 8.5e-83
Identity = 159/392 (40.56%), Postives = 233/392 (59.44%), Query Frame = 0


Query: 13  FITILLCLF------QSYAQSKVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVL 72
           F  +  CLF      +S  + KVF++ ++GA PD +TD+    +  W  AC    G   +
Sbjct: 8   FKALCFCLFFIVVASRSTVRPKVFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKI 67

Query: 73  VPSIGRFLVLPVLLQGPCNGLIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGR 132
               G F +  V   GPC   I+  I+G LLA ++ +     +W  F  + NL I G G 
Sbjct: 68  YVPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGT 127

Query: 133 FLGQGETAWPYNTCKHGP-CTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVF 192
             GQG+ +WP+N C   P C +L +T+    ++   I +ITSLNSK+GHF     +    
Sbjct: 128 LDGQGKQSWPHNDCHTNPNCPKLAMTMGFAFVNNSNIKDITSLNSKMGHFNFFSVHHFNI 187

Query: 193 DNVTVIAPEDSPNTDGIHISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHG 252
             VT+ AP DSPNTDGI +   + + I ++ I TGDDCI+   G+ ++NI+NV+CGPGHG
Sbjct: 188 TGVTITAPGDSPNTDGIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHG 247

Query: 253 ISIGSLGKYQNEPNIDGITVRDSKFVGTKNGIQIKTWSKSYSSV-VSNLTFVNLKMYNVE 312
           IS+GSLGK ++E ++  + VRD  F GT +GI+IKTW  S S + VSN  + N++M +V 
Sbjct: 248 ISVGSLGKSKDEKDVKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVG 307

Query: 313 SPIIINQNYCPHNACNNNKVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVL 372
            PI I+Q YCPH  C + +   S +QI+++K +NI GTS  ++AV L CS++ PC+ + L
Sbjct: 308 KPINIDQKYCPHPPCEHERKGESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVEL 367

Query: 373 NNINLAFNGT--GSSTSICQNIKGSASGPQLP 395
            +IN+  NG   GSSTS+C+N+ G A G   P
Sbjct: 368 IDINIKQNGVKDGSSTSVCENVDGFARGKMFP 399

[Close]

BLAST of CmaCh16G009340 vs. TAIR 10
Match: AT1G43080.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 302.4 bits (773), Expect = 5.5e-82
Identity = 160/393 (40.71%), Postives = 233/393 (59.29%), Query Frame = 0


Query: 10  CVVFITILLCLFQSYAQSKVFDITQYGATPDERTDSTKGLSMAWRDACANKGGGVVLVPS 69
           C+ F+ I +   +   + KVF++ +YG+ PD +TD+    +  W+ AC    G   +   
Sbjct: 12  CLSFLFIAVA-SRPTIRPKVFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVP 71

Query: 70  IGRFLVLPVLLQGPCNGLIQLQINGDLLASSDKAFATGYSWFKFYRVTNLVIQGLGRFLG 129
            G F +  V   GPC   I+  I+G LLA ++       +W  F  + NL I G G   G
Sbjct: 72  KGTFYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDG 131

Query: 130 QGETAWPYNTC-KHGPCTRLPITISLQSIDIVRITNITSLNSKLGHFKVHGCNDVVFDNV 189
           QG+ +WP N C K+  C +L +T+    ++  RI +ITSLNSK+GHF     +      V
Sbjct: 132 QGKYSWPLNDCHKNTNCPKLAMTMGFAFVNNSRIKDITSLNSKMGHFNFFSVHRFNITGV 191

Query: 190 TVIAPEDSPNTDGIHISKSTGVTIMNSIIATGDDCISFGPGSKDVNITNVHCGPGHGISI 249
           T+ AP DSPNTDGI +   + + I N+ I TGDDCI+   G+ +++I+N+ CGPGHGIS+
Sbjct: 192 TITAPGDSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNIKCGPGHGISV 251

Query: 250 GSLGKYQNEPNIDGITVRDSKFVGTKNGIQIKTWSKSYSS-VVSNLTFVNLKMYNVESPI 309
           GSLGK ++E ++  +TVRD+ F GT +GI+IKTW  S S  VVSN  + N++M +V  PI
Sbjct: 252 GSLGKNKDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDVGKPI 311

Query: 310 IINQNYCPHNACNNNKVSVSRIQIKDVKYENIRGTSAKQLAVTLNCSQVVPCQGIVLNNI 369
            I+Q YCPH  C + K   S +QI+D+K +NI GTS   +AV L CS+  PC+ + L +I
Sbjct: 312 NIDQKYCPHPPCEHEKKGESHVQIQDIKLKNIYGTSNNIVAVNLQCSKSFPCKNVELIDI 371

Query: 370 NLAFNG--TGSSTSICQNIKGSASGPQLPPSCL 399
           NL   G   G ST++C+N+ GS     +P  CL
Sbjct: 372 NLKHTGLEKGHSTAMCENVDGSVRSKMVPQHCL 403

The following BLAST results are available for this feature:

BLAST of CmaCh16G009340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6H9K0	3.2e-87	43.97	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
P35339	5.2e-85	43.84	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
P26216	1.4e-82	43.01	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]
P24548	1.6e-81	43.42	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
P35338	2.0e-81	42.47	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1	[more]

BLAST of CmaCh16G009340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33160.1	1.4e-85	43.35	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family pro...	[more]
AT2G15450.1	2.6e-84	40.66	Pectin lyase-like superfamily protein	[more]
AT1G78400.1	6.5e-83	44.65	Pectin lyase-like superfamily protein	[more]
AT2G15460.1	8.5e-83	40.56	Pectin lyase-like superfamily protein	[more]
AT1G43080.1	5.5e-82	40.71	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 180..206 e-value: 97.0 score: 11.8 coord: 260..281 e-value: 43.0 score: 13.0 coord: 230..250 e-value: 2000.0 score: 5.2 coord: 326..366 e-value: 6000.0 score: 1.7 coord: 207..228 e-value: 1200.0 score: 6.7 coord: 290..311 e-value: 6400.0 score: 1.5
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 19..394 e-value: 3.6E-106 score: 357.6
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 57..388 e-value: 1.0E-87 score: 294.2
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 237..250
None	No IPR available	PANTHER	PTHR31375:SF124	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 29..384
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 29..384
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 13..398

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009340.1	CmaCh16G009340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity