CmaCh16G009270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G009270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	serine/arginine-rich splicing factor RS40-like isoform X1
Location	Cma_Chr16: 7049912 .. 7054911 (+)
RNA-Seq Expression	CmaCh16G009270
Synteny	CmaCh16G009270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAACCCTATAAGCACCTCCAGGGCTACGCACTTCTTCCTCTCTATCGCGAATCCCTTCCCTGTTCGACACCGGCTACTACGGCGGCGATTGTGACGGCAGCGGTGACGCAGCTCCTCAGGGGGCACGACCAGGCGACGTCGAACCCGGCTCAGATCTGCAAAAGTAACTATCTCCGGCGTTTGATCACCCAAGAAACGACCTATCCCGACGACACTAGGATCTGCAACGATCCAGCCCTCGGGTCTTTGGATCTGCTACAGGTACACCTTGACAACCCGATCTGCGGCGGACGGCGACGACCATAACTTACGGTAATTGACTCAGTGCGTTAGTTTCCCTAAAGTTACGATTCAGCAAGATTCAAGTCGGCAGCGACGTTTTCGGGAACTTGAACCATTTGGATTTGTAGCGCATTAAGGACCTTAGTAAGTGGTTCTCATTTTCGAATTATTTGTTTGAATCTCTTAGACTTTTTTGCATTCTTTTAGGCTCCGTATCTATGTCAAATTGTGATGTGAATTGTGTACTTGGATATGTTTGGGAAAGTATACATTGGTTAACCGATACAGAATGATTCCTCACCTAGATCTAACCATTTCAACTGAATTAGCCGTAATCCTAGTATGTAAGTCAGGATGGGAGAATGAAGTAGAATGAAATGCTAGAAGGAAGGTCCAACTAAGATGAAGAGGAAGGAGGAAATGAACATGGGAGATGGAAGAGATGTCCTCCTTCAAATGGAAAGTGTTGTGAATGTTAAAAAAAAACCAGAATGAGAGTCAAGGTCGATTGAGGTTGCAACGAGATTGATAAATTTGACAACCCTTAGAAGCTTACCAAGTTTGCAGATTGATGCCCCCTCAACATTAGAGAAGAGAGGGAGGATGCATCCTCGAACAAGCGGAATAGAGAGGTGTGTTGTGGAGCTGACTTGCCATATCTAACACCTCTATGGGTTGTTCTGGAATGACCAGGCTACATACCCCTAGAAGATAAGAGCCCCTTGAACTTAAAGCACTCTGCACATGTCTGCTCGCAGTTCTAGGCTCACCATCCTCATGATGAAAAAGACCTTCGTACAACCCCCCCCCCCACGCCACAAGAAACACTAATCGTGTCCTTAGTTCAAAGAACCAAGGGGCCAAGGCCATCTCTCTGCCCGTGGCTCCAGCCCCTGCAGGAGAAGCCTCATTCAACGGCAGAGTCAAATTTATCCATGGATTGTTATTTTTATTTTCATTTTTATTACTGTTGGTTATGCAAATGTCCAACTCGTATATTCTTCTGCTAGCTGCTAGGTAGTTAATAGTTGGAATTATGGACTTCCAATGGATGATTATGGTCAGGCATTTACAAAACTGATTCCTCTGTAATGATGGTCAATGAGATAGCTCAGTTTGTCTATCTAATGGTTCAACTATTTTGCAATATTCCATTGCACCTTGTGTTTTGCGCTAGGGTTCAGATAGCATTTATAGCACAAAAAGTTATGGCTATAAGTGGCTAGAACTTGGAACTTAGGACCTACAGGTTGGATATTGCCGGTCAAACTTAAAATGCTTTTTGTATGAACCAAAAGTTAATTTAAAGTATATATTTTTTTGTTTAGGAAAATCAATTTGACACGGACTTGCTAACTGGTTTTCAGATTAAGTGCATAGTTGTCGTGGATTCTTAAATATATTCTTCACTTTATGATTAGTGTCAAATAGCTTTCTTGTTGATGTCTCATTTGTATGTTTTTAAATGCTATAGAAACAAAAATTTTAATTTTATATTATAACAGTAACAATATTGTATTTATACTATATTCGTTTTATATGAATATAAAGGTAATGATATGTTTAAAAATACAAAAGTTGAACATACTTATTTGCAAAAGGTAACTGAATGGTTGTTATAGATTTATTTTGTATGTTCTTCACTCAGGGTTATTTTCAAATAGTTGTCTTGTTAATGTTTGGTACTTCTTTCTAGTTGTCGTCATTTTATGTCAATTCCTCCTGGGGTGGTTGTATCCTTGAACTTTTTCTTTCTTTCCATATATAAATGAAAAGCTTGTTTCTTGTTAATATAAAAGGTGTCTGGTTGATGTGGTGAAATTAGTTTCACGAACTCTGATGTTGTATTTCAATGTTCTTTTTTTTTAAATCATGAATAAAAGAGATATATTAAATGTTCTATTGTGTTTTCAACCTTTTTTCAGCAAGTATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTGAGCTTCTAGCCATAGAATATCTGTTTGTGTTTTAATTCCTTTTTTATTAAATAAACTTATAAGGCGTATTCTAGTTACACAAAAGAGCACGGTTGTGTTTGTTCCTGAATTCTTTTAAGGTAGTATATAATTTGTGTCATGTCGATACGTACCAATTGCAGAAAAGAAAAAACAAGTATCATATCGATACAAGCCACTTGCAATTTGCAAAGTTGCTGATATCTTTAATAGATGCAAATTACTGATCTGAAAATTTACTCTCTATCCACCAAGAAAGTGTTGGATTCAATGTCGGCAAGGCAATTCAGCTGATGGAAATTCCTCCAAAGTAGTAGTTCTCATTGCATTTGGTGCCTTGCAATACGAATGGGCATCATCCAGCGTATGGAAATCAGAGAAGGCAACATTTGTTAAGTTTTTGGTGGAGGATTCTAAAAAAATTTGAGAAAAGAAGAGCGTGTATTTTAAATCCTAAAACTCCTTGGCCAGAATTTTTTTGGTGCAGGATTTTCTTCGCATATTCATAATCTTCTTGGATAAGGATGGCTCTTCACAATTGAGTTTTCCGCCTGTGACACCGCTTCCTCTTCTTGTTTCCAAGAAGATTCATACCGATCCTCATTGGCACTGCCATCTTACATTTTCCTCAGACACTTTGCTTTCCATTCCTCATGACTTTTGCCTGCCTACAATTTCATACATTGTTTCAAGCTTGAAACATTGTCAACCTTAGCTGAGGCTGCAGAATAATGGAGAAGGCACTTTCTATTTGTAGACCTACCATGAGACATCCTGTTTTGGATTATTGCTCCTTGACACCACTTAATTCACAACACAAGGTCTGTTGCTAAATTCACTGTTAACTTAGTTTATAGATTTCACGGTGGTTGCAAATATTTCTTTCTTATGGTAAGAATCTTTTGTGGTTTGTTGAATGTTTGTTATAGAATAATTATGTTGCATTTAGAGGAATTCTTTGGTGGGAAATTTTTCATCTTTTATCATTGTTGGTGTCTCATCTCCAAGTCGTTATTCAGTTTTAGTTGTTTTTATTGGTTTTCAGGTTTTGCTTTTATTTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAAGTAATATAAATTGATATGGCAGAACTTCTAACTAACTTTTTCCTTTCCATCCCTTTGTGAAACTTTTATTTGATTTTATTTACTATATCTTCAACTGTATTTTGATCGATCATTCTTTTGCTCTGTAGCAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGATCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGGTTAGTTTTTTTAGTTACATTGATGTTTTCACTTGTTATAGGCAGGGTGTGTACACGTTAAGTTATTGGTATGCCTTTTAATTATCATTACTGTGTACAGTAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTCGAGATGACGACGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGTGGTCGTAGTCCCAATCAGAGTCCTTACAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGAGATCAAGTGACCATGTTAGGGCCCCTAGTCATAGTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCATAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGAAGAACATCGAACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGACCAAATACAATAGCTGAACCAGGGGATAGCCCCAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGGTATAAGAGGTTTGTACCTCGAGTTCATTTTATTATATTATTTCAATTGTTATTTGAATTTTTCATCTAATCCCTGCATATCCATATGTGATGGTTTTGCAGCCGTTCACCTCAAGCAGAGGAATGAAGTTGATCTCAATCTGGTTTAGAGAAGAGTACGTTTCTAGTTGTATAATGGTTAACATTTTTAGTGTAAGGGTTTGTTTTGCTGATTTCTAAACATTTATGCTTCAGTTTGTAGCGATGGTATGGATGATATATGCTGTTTGTTGCCAGATTTGAGTTAACACACAAGTTTGCTCTATTTGGGTTATTCTCATAAGGGCTTTTACAAGAAACAAACTAGAAATTGCTTTTAGCGCTTCAA

mRNA sequence

AAAAAAAAACCCTATAAGCACCTCCAGGGCTACGCACTTCTTCCTCTCTATCGCGAATCCCTTCCCTGTTCGACACCGGCTACTACGGCGGCGATTGTGACGGCAGCGGTGACGCAGCTCCTCAGGGGGCACGACCAGGCGACGTCGAACCCGGCTCAGATCTGCAAAAGTAACTATCTCCGGCGTTTGATCACCCAAGAAACGACCTATCCCGACGACACTAGGATCTGCAACGATCCAGCCCTCGGGTCTTTGGATCTGCTACAGGTACACCTTGACAACCCGATCTGCGGCGGACGGCGACGACCATAACTTACGGTAATTGACTCAGTGCGTTAGTTTCCCTAAAGTTACGATTCAGCAAGATTCAAGTCGGCAGCGACGTTTTCGGGAACTTGAACCATTTGGATTTGTAGCGCATTAAGGACCTTACAAGTATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATTTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGATCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGTAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTCGAGATGACGACGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGTGGTCGTAGTCCCAATCAGAGTCCTTACAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGAGATCAAGTGACCATGTTAGGGCCCCTAGTCATAGTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCATAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGAAGAACATCGAACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGACCAAATACAATAGCTGAACCAGGGGATAGCCCCAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGGTATAAGAGCCGTTCACCTCAAGCAGAGGAATGAAGTTGATCTCAATCTGGTTTAGAGAAGAGTACGTTTCTAGTTGTATAATGGTTAACATTTTTAGTGTAAGGGTTTGTTTTGCTGATTTCTAAACATTTATGCTTCAGTTTGTAGCGATGGTATGGATGATATATGCTGTTTGTTGCCAGATTTGAGTTAACACACAAGTTTGCTCTATTTGGGTTATTCTCATAAGGGCTTTTACAAGAAACAAACTAGAAATTGCTTTTAGCGCTTCAA

Coding sequence (CDS)

ATGAAGCCAATCTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGGAAAGTTGATAGAGTAGATATGAAATCTGGTTTTGCTTTTATTTACATGGAGGATGAGAGAGAGGCTGAGGACGCTATCCGTGCACTTGATCGGAGAGAATTTGGCCGAAAGGGTCGCAGACTACGTGTTGAGTGGACCAAACAAGAGCGTGGCATTAGAAGACCAGGTGGTGGCAGAGGTGGAGGAGATTCAAGGAGATCCTCTACTAATACAAAACCTTCCAAGACTTTATTTGTTATTAACTTTGATCCATATCATACTAGGACAAGGGATTTGGAGAGGCACTTCGATCCTTATGGTAAGATATTGAATGTAAGGATTCGAAGGAATTTTGCATTTGTCCAGTATGAATTGCAGGAGGATGCCACTAGAGCATTGGAGATTACAAACATGAGTAAATTGATGGATCGAGTGATTTCAGTGGAATATGCTGTTCGAGATGACGACGAGAAAAGAAATGGGTATAGTCCAGATAGGACTCGTGATAGGTCTCCCGATAGAAAACGGCGATCCCCAAGTCCCTATAGAAGAGAGCGAGGAAGCCCTGATTATGGCAATGGTGTTAGCCGCAGTCCATATAGGAAAGTCAGGGCTAGTCCTGATTATGGAAGTCGTCGTAGTCCAAGTCCTTACCAGAGAGTGAGGGAGAGGGGTTCTCCTGAATATGGTCGTGGTCGTAGTCCCAATCAGAGTCCTTACAGGAGAGAGCGAGAGCGAGAGAGATCAAGTGACCATGCCAGGGCCCCTAGCCATAGTCCTTATAGGAGAGAGCGAGAGAGATCAAGTGACCATGTTAGGGCCCCTAGTCATAGTCCTCCTCCCCATCAGAGGGAAAGACCAAATGGTGACCGAGCCCATAGCGGAATTCACAGTCCTTACGGGAGAGAGAGGGGCAGTCCTACTGAAGAACATCGAACTAGCTATAGTCCTCGTGATAGAGAGAGGTCAAACCCGGACAATGGTCATGATCAGCGACCAAATACAATAGCTGAACCAGGGGATAGCCCCAGTTATGGTGGGACTCAGAGCCCGAAGCATCGGGGGTATAAGAGCCGTTCACCTCAAGCAGAGGAATGA

Protein sequence

MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPPPHQRERPNGDRAHSGIHSPYGRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKSRSPQAEE

Homology

[Close]

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot
Match: P92965 (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 396.7 bits (1018), Expect = 2.9e-109
Identity = 235/385 (61.04%), Postives = 283/385 (73.51%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQR 240
           +SP+R RDRSP+R+RRSPSPY+RERGSPDYG G S  + YRK R SPDYG RRSPSPY++
Sbjct: 181 HSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKK 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R RGSPEYGR R  N SP RRER     + ++R+P++     +RER S     P+HS  
Sbjct: 241 SR-RGSPEYGRDRRGNDSPRRRERVAS-PTKYSRSPNN-----KRERMS-----PNHS-- 300

Query: 301 PHQRERPNGDRAHSGIHSPYGRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAEPG 360
           P ++E P      +G+      E  SP E        R+R RS+P+NG  + P +I    
Sbjct: 301 PFKKESP-----RNGV-----GEVESPIER-------RERSRSSPENGQVESPGSIGRRD 350

Query: 361 DSPSYGGTQSPKHRGYKSRSPQAEE 385
               Y G +SP  +    RSP A+E
Sbjct: 361 SDGGYDGAESPMQKSRSPRSPPADE 350

[Close]

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot
Match: P92966 (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 379.8 bits (974), Expect = 3.7e-104
Identity = 231/387 (59.69%), Postives = 269/387 (69.51%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQR 240
           YSP+R RDRSPDR+RRSPSPYRRERGSPDYG G S   +++ R SPDYG  RRSPSPY+R
Sbjct: 181 YSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKR 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R   SP+Y R          R RER  S ++    + SP +          R  S SPP
Sbjct: 241 ARL--SPDYKRD--------DRRRERVASPENGAVRNRSPRKG---------RGESRSPP 300

Query: 301 PHQRERPNGDRAHSGIHSPY--GRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAE 360
           P+++ R       S    PY   RE  SP    +     R R +S+P+NG  + P  I E
Sbjct: 301 PYEKRR------ESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIME 356

Query: 361 PGDSPSYGGTQSPKHRGYKSRSPQAEE 385
                 Y G  SP  R   SRSP AEE
Sbjct: 361 VEAGRGYDGADSP-IRESPSRSPPAEE 356

[Close]

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot
Match: P92964 (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 1.5e-68
Identity = 158/284 (55.63%), Postives = 192/284 (67.61%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG+AF+Y EDER+AEDAIR LD   F
Sbjct: 1   MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           G + RRL VEW K ERG  RP G        ++ +N KP+KTLFVINFDP  T+  D+E+
Sbjct: 61  GYEKRRLSVEWAKGERG--RPRG------DAKAPSNLKPTKTLFVINFDPIRTKEHDIEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGK+ NVRIRRNF+FVQ+E QEDAT+ALE T  SK++DRV+SVEYA++DDDE+   
Sbjct: 121 HFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDER--- 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRV 240
              DR   RSP   RRS SP  R R SPDYG     SP +  R SPDYG  RSP   +  
Sbjct: 181 --DDRNGGRSP---RRSLSPVYRRRPSPDYGR--RPSPGQGRRPSPDYGRARSP---EYD 240

Query: 241 RERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRER 285
           R +G   Y R RSP+      +  R+RS  + R  S SP  R R
Sbjct: 241 RYKGPAAYERRRSPDYGRRSSDYGRQRSPGYDRYRSRSPVPRGR 263

[Close]

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot
Match: Q9ZPX8 (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.6e-62
Identity = 140/256 (54.69%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           M+ ++ GNF+YD R  DLERLFS++G+V RVDMKSG+AF+Y EDER+AEDAIR  D   F
Sbjct: 1   MRHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           G   R+L VEW K  +G R  G  R G    ++ +N +P+KTLFVINFDP  TR RD+ER
Sbjct: 61  GYGRRKLSVEWAKDFQGER--GKPRDG----KAVSNQRPTKTLFVINFDPIRTRERDMER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGK+LNVR+RRNFAFVQ+  QEDAT+AL+ T+ SKL+D+V+SVEYA+R+  E+ + 
Sbjct: 121 HFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDR 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRV 240
           Y+  R R       RR PSP    R SP+Y      +PY + R SPDYG  R  S Y R 
Sbjct: 181 YAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYER-RKSPDYG--RRSSDYGRA 240

Query: 241 RERGSPEYGRGRSPNQ 257
           R R SP Y R RSP Q
Sbjct: 241 RAR-SPGYDRSRSPIQ 246

[Close]

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.5e-14
Identity = 96/316 (30.38%), Postives = 140/316 (44.30%), Query Frame = 0


Query: 2   KPIFCGNFEYDARQPDLERLFSRYGKVDRVDMK-----SGFAFIYMEDEREAEDAIRALD 61
           + ++ GN   D R+ ++E LFS+YG V ++D+K      G+AF+  +D R+AEDAI   D
Sbjct: 7   RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66

Query: 62  RREFGRKGRRLRVEWTKQERGIRRP---------GGGRGGGDSRRSSTNTKPSKT---LF 121
             +F   G RLRVE      G RR          GGGRGGG  R    +  PS+      
Sbjct: 67  GYDF--DGHRLRVELA---HGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRV 126

Query: 122 VINFDPYHTRTRDLERHFDPYGKILNVRIRRN----FAFVQYELQEDATRALEITNMSKL 181
           ++   P     +DL+ H    G +   ++ R+       V Y   ED   AL+  + ++ 
Sbjct: 127 LVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 186

Query: 182 MDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYR 241
            +   +    VR+ D +++  SP R R  S  R R       R R         SRSP  
Sbjct: 187 RNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSR---SRSRSRSPKA 246

Query: 242 K-VRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSP 296
           K  R SP   + RSP P  + R   SP   R RS ++SP    ++    S    +P+ SP
Sbjct: 247 KSSRRSPAKSTSRSPGPRSKSR---SPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSP 302

[Close]

BLAST of CmaCh16G009270 vs. TAIR 10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 396.7 bits (1018), Expect = 2.1e-110
Identity = 235/385 (61.04%), Postives = 283/385 (73.51%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQR 240
           +SP+R RDRSP+R+RRSPSPY+RERGSPDYG G S  + YRK R SPDYG RRSPSPY++
Sbjct: 181 HSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKK 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R RGSPEYGR R  N SP RRER     + ++R+P++     +RER S     P+HS  
Sbjct: 241 SR-RGSPEYGRDRRGNDSPRRRERVAS-PTKYSRSPNN-----KRERMS-----PNHS-- 300

Query: 301 PHQRERPNGDRAHSGIHSPYGRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAEPG 360
           P ++E P      +G+      E  SP E        R+R RS+P+NG  + P +I    
Sbjct: 301 PFKKESP-----RNGV-----GEVESPIER-------RERSRSSPENGQVESPGSIGRRD 350

Query: 361 DSPSYGGTQSPKHRGYKSRSPQAEE 385
               Y G +SP  +    RSP A+E
Sbjct: 361 SDGGYDGAESPMQKSRSPRSPPADE 350

[Close]

BLAST of CmaCh16G009270 vs. TAIR 10
Match: AT4G25500.4 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 396.7 bits (1018), Expect = 2.1e-110
Identity = 235/385 (61.04%), Postives = 283/385 (73.51%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR EF
Sbjct: 1   MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GRKGRRLRVEWTK ERG    G  R GG SRRSS++ +PSKTLFVINFD  +TRTRDLE+
Sbjct: 61  GRKGRRLRVEWTKSERG----GDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEK 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +N SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSR-SPYRKVRASPDYGSRRSPSPYQR 240
           +SP+R RDRSP+R+RRSPSPY+RERGSPDYG G S  + YRK R SPDYG RRSPSPY++
Sbjct: 181 HSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKK 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R RGSPEYGR R  N SP RRER     + ++R+P++     +RER S     P+HS  
Sbjct: 241 SR-RGSPEYGRDRRGNDSPRRRERVAS-PTKYSRSPNN-----KRERMS-----PNHS-- 300

Query: 301 PHQRERPNGDRAHSGIHSPYGRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAEPG 360
           P ++E P      +G+      E  SP E        R+R RS+P+NG  + P +I    
Sbjct: 301 PFKKESP-----RNGV-----GEVESPIER-------RERSRSSPENGQVESPGSIGRRD 350

Query: 361 DSPSYGGTQSPKHRGYKSRSPQAEE 385
               Y G +SP  +    RSP A+E
Sbjct: 361 SDGGYDGAESPMQKSRSPRSPPADE 350

[Close]

BLAST of CmaCh16G009270 vs. TAIR 10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 382.9 bits (982), Expect = 3.1e-106
Identity = 230/387 (59.43%), Postives = 268/387 (69.25%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQR 240
           YSP+R RDRSPDR+RRSPSPYRRERGSPDYG G S   +++ R SPDYG  RRSPSPY+R
Sbjct: 181 YSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKR 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R   SP+Y R          R RER  S ++    + SP +          R  S SPP
Sbjct: 241 ARL--SPDYKRD--------DRRRERVASPENGAVRNRSPRKG---------RGESRSPP 300

Query: 301 PHQRERPNGDRAHSGIHSPY--GRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAE 360
           P+++ R       S    PY   RE  SP    +     R R +S+P+NG  + P  I E
Sbjct: 301 PYEKRR------ESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIME 357

Query: 361 PGDSPSYGGTQSPKHRGYKSRSPQAEE 385
                 Y G  SP      SRSP AEE
Sbjct: 361 VEAGRGYDGADSPIRESSPSRSPPAEE 357

[Close]

BLAST of CmaCh16G009270 vs. TAIR 10
Match: AT5G52040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 379.8 bits (974), Expect = 2.6e-105
Identity = 231/387 (59.69%), Postives = 269/387 (69.51%), Query Frame = 0


Query: 1   MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF 60
           MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+GFAF+YMEDER+AEDAIRALDR E+
Sbjct: 1   MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEY 60

Query: 61  GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER 120
           GR GRRLRVEWTK +RG    G GR GG SRRSS+  +PSKTLFVINFD  +TRTRDLER
Sbjct: 61  GRTGRRLRVEWTKNDRG----GAGRSGG-SRRSSSGLRPSKTLFVINFDAQNTRTRDLER 120

Query: 121 HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG 180
           HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ TN SKLMD+VISVEYAV+DDD + NG
Sbjct: 121 HFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNG 180

Query: 181 YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYG-SRRSPSPYQR 240
           YSP+R RDRSPDR+RRSPSPYRRERGSPDYG G S   +++ R SPDYG  RRSPSPY+R
Sbjct: 181 YSPERRRDRSPDRRRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKR 240

Query: 241 VRERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERSSDHVRAPSHSPP 300
            R   SP+Y R          R RER  S ++    + SP +          R  S SPP
Sbjct: 241 ARL--SPDYKRD--------DRRRERVASPENGAVRNRSPRKG---------RGESRSPP 300

Query: 301 PHQRERPNGDRAHSGIHSPY--GRERGSPTEEHRTSYSPRDRERSNPDNGHDQRPNTIAE 360
           P+++ R       S    PY   RE  SP    +     R R +S+P+NG  + P  I E
Sbjct: 301 PYEKRR------ESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIME 356

Query: 361 PGDSPSYGGTQSPKHRGYKSRSPQAEE 385
                 Y G  SP  R   SRSP AEE
Sbjct: 361 VEAGRGYDGADSP-IRESPSRSPPAEE 356

[Close]

BLAST of CmaCh16G009270 vs. TAIR 10
Match: AT4G25500.3 (arginine/serine-rich splicing factor 35 )

HSP 1 Score: 333.2 bits (853), Expect = 2.8e-91
Identity = 207/350 (59.14%), Postives = 250/350 (71.43%), Query Frame = 0


Query: 36  GFAFIYMEDEREAEDAIRALDRREFGRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSST 95
           GFAF+YMEDER+AEDAIRALDR EFGRKGRRLRVEWTK ERG    G  R GG SRRSS+
Sbjct: 3   GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERG----GDKRSGGGSRRSSS 62

Query: 96  NTKPSKTLFVINFDPYHTRTRDLERHFDPYGKILNVRIRRNFAFVQYELQEDATRALEIT 155
           + +PSKTLFVINFD  +TRTRDLE+HF+PYGKI+NVRIRRNFAF+QYE QEDATRAL+ +
Sbjct: 63  SMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDAS 122

Query: 156 NMSKLMDRVISVEYAVRDDDEKRNGYSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVS 215
           N SKLMD+VISVEYAV+DDD + NG+SP+R RDRSP+R+RRSPSPY+RERGSPDYG G S
Sbjct: 123 NNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGAS 182

Query: 216 R-SPYRKVRASPDYGSRRSPSPYQRVRERGSPEYGRGRSPNQSPYRRERERERSSDHARA 275
             + YRK R SPDYG RRSPSPY++ R RGSPEYGR R  N SP RRER     + ++R+
Sbjct: 183 PVAAYRKERTSPDYGRRRSPSPYKKSR-RGSPEYGRDRRGNDSPRRRERVAS-PTKYSRS 242

Query: 276 PSHSPYRRERERSSDHVRAPSHSPPPHQRERPNGDRAHSGIHSPYGRERGSPTEEHRTSY 335
           P++     +RER S     P+HS  P ++E P      +G+      E  SP E      
Sbjct: 243 PNN-----KRERMS-----PNHS--PFKKESP-----RNGV-----GEVESPIER----- 302

Query: 336 SPRDRERSNPDNGHDQRPNTIAEPGDSPSYGGTQSPKHRGYKSRSPQAEE 385
             R+R RS+P+NG  + P +I        Y G +SP  +    RSP A+E
Sbjct: 303 --RERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 317

The following BLAST results are available for this feature:

BLAST of CmaCh16G009270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92965	2.9e-109	61.04	Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92966	3.7e-104	59.69	Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4...	[more]
P92964	1.5e-68	55.63	Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3...	[more]
Q9ZPX8	1.6e-62	54.69	Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS...	[more]
O22315	3.5e-14	30.38	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]

BLAST of CmaCh16G009270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25500.1	2.1e-110	61.04	arginine/serine-rich splicing factor 35	[more]
AT4G25500.4	2.1e-110	61.04	arginine/serine-rich splicing factor 35	[more]
AT5G52040.2	3.1e-106	59.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G52040.1	2.6e-105	59.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G25500.3	2.8e-91	59.14	arginine/serine-rich splicing factor 35	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 102..168 e-value: 5.3E-16 score: 69.2 coord: 3..70 e-value: 3.6E-15 score: 66.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..62 e-value: 3.7E-13 score: 49.1 coord: 103..165 e-value: 8.8E-12 score: 44.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..172 score: 15.118645
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..74 score: 16.534245
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 94..216 e-value: 2.4E-20 score: 75.0 coord: 2..93 e-value: 2.9E-20 score: 74.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..384
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 4..211
None	No IPR available	PANTHER	PTHR23147:SF159	BNAC08G47240D PROTEIN	coord: 4..211
None	No IPR available	CDD	cd12234	RRM1_AtRSp31_like	coord: 2..73 e-value: 2.2646E-36 score: 125.318
None	No IPR available	CDD	cd12466	RRM2_AtRSp31_like	coord: 102..171 e-value: 5.5061E-39 score: 131.902
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009270.1	CmaCh16G009270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding