CmaCh16G009240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G009240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	syntaxin-52-like
Location	Cma_Chr16: 7034135 .. 7036888 (-)
RNA-Seq Expression	CmaCh16G009240
Synteny	CmaCh16G009240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTCTTCATCCATTTTGTCCGTCGATTTCTCGAGACTGGCCGACATTGCATTGGATTATTGAAATGAGTTTCGTTTGCGTTGGTTATTCCGATTAACGCACCCTTATATTTCCGATATATACAATTAGGTTTCGTTCAGCCGACGGTAGTTTATTTTGGTTGATTCTTTTTCGGCCTTGTTTCTTTTGGTAACATGAACAAGAGAAGTAGAATTATTCATCCTGTTTCGTGATATGTCTAGTTGTCATCAATTTTCCTTGTATTTTCTTACCATTTTTGATTTCATGGTAGATGGTTATATGAATTGGAATATTTGATTATGTCATTTGGAAACTTTTAATTCAATCTCCATCGGTTAGCTTTATGGGGTTGTGACATTAGGTGGAGGGGCATGCAAGCTGGATAATCTCTGATATGAACAAAAAATTAACCAAAAATCCGTTTTGGTGCTTGTTTTTGGAATTGATTTTAGGAGTATTTATGAGTCTAATGGAGATGAGAGTATAATATACCGTTATTAATGCGTCTCTTCTTGTCAGGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCGAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCTTCCACGATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTGTATGTCATGTCTTAAATTGAATTTAGCAATATCCTTACTTGCATAATGCTATGCTAATGTTAGAGCATTTTGATTTGGGTTCTGTTTCTGTCATGTATATACTCACGTTGCTTTAAAATCCAAGTAACAATTGTTCATCTAACCTTGAGATGTAGATGACCTTTTGTGTTCTAGAGGGGTGCATAGTTGAGAAAGATATATGTACTAGTTCTTAGTTCTTGGCATCTTTGAGGGGACAGCAAATGCCATGGTTCAATCTCCCTCCTCTTCGCTACTGCACTAAATAATGAGAGACCGATGAAGGGGAGGGGAGTGAGTACGGCAGAGTTCTTGCCGGAAATGTCCTCTGACTTTGATCCTTGCATCAACAAAGCCATAAGAACTATTTTTCAATCCTAAGGGACCAAAACTTTGAGATCGAAATTGTATCAATAACGGCCTAAGCCTACTACTAGCAAATATTGTCCTCTTTGGGCTTTCCCTTTCAGGCTTCCCCTCAAGATTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAATAAGTCGTTCTCCTCTCCAACCAATGTGGGATCTCACACTATTTTTTAATAAACCCAAGTTTGTTCTTTCTTGTGGTTTGCAGGTCCGAAAAGGAGATAAATCGACGAAAGGACATGCTTGCTCAGATGAGATCAAAAGTAAACCAGATGGCCTCAATGTTGAACATGTCAAACTTTGCTAACCGCAACAGTTTGCTTGGCCCGGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGGTTTTCAAAGACAAATCATGAAGGGCAAGTTTTTGTGACAACTCTACTTTCAATATATTATATACTTCCTTGTATCCCTTTTGGGTCTTCTCTGATATGATTTTGGAACAGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACTATAAGAAGTACCAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGTACGCATGGTTTCTTGTTTGCTTTATGCATGCTGTAAGAGTTCATTCCATGTCACGTTTAATTTTACATGTCATCTAATCATACTTTTCTCTGCAGGATGACTTAGACCAACATGTCGATGTTACAGACTCTCGATTAGCGGTAAAATCCTCTCTTACTATTCATTTTTGGCTTTAGATATCTCTAGGATGTAGAGCTAATTCATCACTAGTTGAAATAGATATGGTAATATTCGTGTTATTGTTGCCTCTTTTACAACAATGACAAGAAAAATTGGTTAATTGATCTGGGGGCTTCACAGAAAATGAAACTGACTGTTGTAAAAAGTATTCAACTGTAAAAACCAGATAACTATATGTGCTTGATGATCTTGATCTTGGTCTCATGAAGCTAACATGTCTTACGGGTCTAGGCTCTTGCATCTCGATATTTCCATATTGACACGATATTGTCCAACTTTATAAGCTCTCCGTACTTTAGGATTTTATCCAAAAGACTTTGTACCTACAGAGATATTGTTCTTACAAGCTCTTACTCGTACGTGATCTCTAATGAACGTGAGACTATTGATATCTCAACGATCCTTCCATCAAATAAAAGATGAACGAACATTAAATTTCTTGAAATCCTTTGTGTGTTACCCTGTGGTTTAAATCTTGGTTTTGTTTTTGAGAACAGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCGACTCATTCGATACTTGTAAACACAACATAACCATATGGGTGTAGATTTTTCACTTTATGATTAATATCATCATCCATAATTGTCCAGTAATGTTAGCTTGTTCTTATGCTTCATTTTTGTCCTGTGGTTTGGAAATTAAATCAGATTAGAGAGAAAGAAAAAAACTTGAA

mRNA sequence

CTTCGTCTTCATCCATTTTGTCCGTCGATTTCTCGAGACTGGCCGACATTGCATTGGATTATTGAAATGAGTTTCGTTTGCGTTGGTTATTCCGATTAACGCACCCTTATATTTCCGATATATACAATTAGGTTTCGTTCAGCCGACGGTTGGTGATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCGAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCTTCCACGATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTTTTGCTTGGCCCGGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACTATAAGAAGTACCAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAACATGTCGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCGACTCATTCGATACTTGTAAACACAACATAACCATATGGGTGTAGATTTTTCACTTTATGATTAATATCATCATCCATAATTGTCCAGTAATGTTAGCTTGTTCTTATGCTTCATTTTTGTCCTGTGGTTTGGAAATTAAATCAGATTAGAGAGAAAGAAAAAAACTTGAA

Coding sequence (CDS)

ATGGCTTCTTCTGATTTATGGTTAAAGGAATATAATGAAGCCTCGAAGCTTGGGGATGATATCAATGGCATGATTTCTGAAAGAAGTTCCGTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCTTCCACGATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTAGAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCCCTTTTGCTTGGCCCGGATATGAAATCAGCGGATGTAATGAGCAAAACAGCTGAACTAGACAACCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGTTGGAGGAGACTATAAGAAGTACCAAACATATTGCTTTGGCAGTTAATGAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTAGACCAACATGTCGATGTTACAGACTCTCGATTAGCGAGGGTGCAGAAGAGATTGGGAATATTGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTGGGAATGCTTCTGTCTGTGGTAGGTATTGTGGGTTTAATTGCTGTCATATGGCGACTCATTCGATACTTGTAA

Protein sequence

MASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLESLLLKLPVKQPLLLGPDMKSADVMSKTAELDNQGLVEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL

Homology

[Close]

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot
Match: Q94KK7 (Syntaxin-52 OS=Arabidopsis thaliana OX=3702 GN=SYP52 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.3e-56
Identity = 124/231 (53.68%), Postives = 153/231 (66.23%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++EYNEA KL +DINGM+SER++   TGP+AQR AS IRRKITILGT++D L+S
Sbjct: 3   SSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQS 62

Query: 62  LLLKLPVKQPL------------------------------------LLGPDMKSADVMS 121
           LL+K+P KQ +                                    L G D+K  D ++
Sbjct: 63  LLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAIN 122

Query: 122 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 181
           + + +DNQG+V        EQDEGLEKLEET+ STKHIALAVNEEL L TRLIDDLD  V
Sbjct: 123 RVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDV 182

Query: 182 DVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           D+TDSRL RVQK L ++NK  K  CSC+ MLLSV+GIVGL  VIW L++YL
Sbjct: 183 DITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233

[Close]

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot
Match: Q9SA23 (Syntaxin-51 OS=Arabidopsis thaliana OX=3702 GN=SYP51 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.5e-55
Identity = 123/230 (53.48%), Postives = 149/230 (64.78%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR AS IRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 62  LLLKLPVK-----------------------------------QPLLLGPDMKSADVMSK 121
           LL ++  K                                   +  LLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 122 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 181
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

Query: 182 VTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           VTDSRL RVQK L ++NK  +  CSC+ MLLSV+GIVGL  VIW L++Y+
Sbjct: 183 VTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232

[Close]

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot
Match: Q54IX6 (Probable syntaxin-8B OS=Dictyostelium discoideum OX=44689 GN=syn8B PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-06
Identity = 32/101 (31.68%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 87  TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 146
           T + DNQ L         EQDE L+ L ++I   K++A A++ ELD H  ++DD++   D
Sbjct: 135 TKQFDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTD 194

Query: 147 VTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIA 180
               RL    +R+  + + A  +C  + +++ ++ IV LIA
Sbjct: 195 AVSMRLRNANRRMETIKQNAGSTCMIVCIVILIILIVVLIA 235

[Close]

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot
Match: O88983 (Syntaxin-8 OS=Mus musculus OX=10090 GN=Stx8 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.6e-06
Identity = 55/232 (23.71%), Postives = 94/232 (40.52%), Query Frame = 0


Query: 5   DLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLESLLL 64
           D W   Y+   ++  +I   I ER+     G +  +   TIR  +  L  K+D L+ LLL
Sbjct: 4   DPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLL 63

Query: 65  K---------------------LPVKQPLLLG--------PDMKSADVMSKTAEL----- 124
           +                     L  ++ LLL         PD+  + +MS+ A+      
Sbjct: 64  RAVSTRQITQLEGDRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGTPNP 123

Query: 125 -------DNQGL-------------VEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLI 183
                  + +GL              EQD GL+ L   I   K +   +  ELD    +I
Sbjct: 124 WLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEII 183

[Close]

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot
Match: Q9Z2Q7 (Syntaxin-8 OS=Rattus norvegicus OX=10116 GN=Stx8 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.6e-06
Identity = 55/232 (23.71%), Postives = 94/232 (40.52%), Query Frame = 0


Query: 5   DLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLESLLL 64
           D W   Y+   ++  +I   I ER+     G +  +   TIR  +  L  K+D L+ LLL
Sbjct: 4   DPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLL 63

Query: 65  K---------------------LPVKQPLLLG--------PDMKSADVMSKTAEL----- 124
           +                     L  ++ LLL         PD+  + +MS+ A+      
Sbjct: 64  RAVSTRQITQLEGDRRQNLLDDLVTRERLLLASFKNEGSEPDLIRSSLMSEEAKRGTPNP 123

Query: 125 -------DNQGL-------------VEQDEGLEKLEETIRSTKHIALAVNEELDLHTRLI 183
                  + +GL              EQD GL+ L   I   K +   +  ELD    +I
Sbjct: 124 WLCEEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEII 183

[Close]

BLAST of CmaCh16G009240 vs. TAIR 10
Match: AT1G79590.1 (syntaxin of plants 52 )

HSP 1 Score: 218.8 bits (556), Expect = 3.8e-57
Identity = 124/231 (53.68%), Postives = 153/231 (66.23%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++EYNEA KL +DINGM+SER++   TGP+AQR AS IRRKITILGT++D L+S
Sbjct: 3   SSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQS 62

Query: 62  LLLKLPVKQPL------------------------------------LLGPDMKSADVMS 121
           LL+K+P KQ +                                    L G D+K  D ++
Sbjct: 63  LLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAIN 122

Query: 122 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 181
           + + +DNQG+V        EQDEGLEKLEET+ STKHIALAVNEEL L TRLIDDLD  V
Sbjct: 123 RVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDV 182

Query: 182 DVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           D+TDSRL RVQK L ++NK  K  CSC+ MLLSV+GIVGL  VIW L++YL
Sbjct: 183 DITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233

[Close]

BLAST of CmaCh16G009240 vs. TAIR 10
Match: AT1G79590.2 (syntaxin of plants 52 )

HSP 1 Score: 218.8 bits (556), Expect = 3.8e-57
Identity = 124/231 (53.68%), Postives = 153/231 (66.23%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++EYNEA KL +DINGM+SER++   TGP+AQR AS IRRKITILGT++D L+S
Sbjct: 3   SSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQS 62

Query: 62  LLLKLPVKQPL------------------------------------LLGPDMKSADVMS 121
           LL+K+P KQ +                                    L G D+K  D ++
Sbjct: 63  LLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFGTDLKPDDAIN 122

Query: 122 KTAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHV 181
           + + +DNQG+V        EQDEGLEKLEET+ STKHIALAVNEEL L TRLIDDLD  V
Sbjct: 123 RVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDV 182

Query: 182 DVTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           D+TDSRL RVQK L ++NK  K  CSC+ MLLSV+GIVGL  VIW L++YL
Sbjct: 183 DITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233

[Close]

BLAST of CmaCh16G009240 vs. TAIR 10
Match: AT1G16240.1 (syntaxin of plants 51 )

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-56
Identity = 123/230 (53.48%), Postives = 149/230 (64.78%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR AS IRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 62  LLLKLPVK-----------------------------------QPLLLGPDMKSADVMSK 121
           LL ++  K                                   +  LLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 122 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 181
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

Query: 182 VTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           VTDSRL RVQK L ++NK  +  CSC+ MLLSV+GIVGL  VIW L++Y+
Sbjct: 183 VTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232

[Close]

BLAST of CmaCh16G009240 vs. TAIR 10
Match: AT1G16240.2 (syntaxin of plants 51 )

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-56
Identity = 123/230 (53.48%), Postives = 149/230 (64.78%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR AS IRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 62  LLLKLPVK-----------------------------------QPLLLGPDMKSADVMSK 121
           LL ++  K                                   +  LLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 122 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 181
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

Query: 182 VTDSRLARVQKRLGILNKRAKGSCSCLGMLLSVVGIVGLIAVIWRLIRYL 189
           VTDSRL RVQK L ++NK  +  CSC+ MLLSV+GIVGL  VIW L++Y+
Sbjct: 183 VTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232

[Close]

BLAST of CmaCh16G009240 vs. TAIR 10
Match: AT1G16240.3 (syntaxin of plants 51 )

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-41
Identity = 98/191 (51.31%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 2   ASSDLWLKEYNEASKLGDDINGMISERSSVPATGPEAQRHASTIRRKITILGTKVDGLES 61
           +SSD W++ YNEA KL ++INGMISERSS   TGP+AQR AS IRRKITI G K+D L+S
Sbjct: 3   SSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQS 62

Query: 62  LLLKLPVK-----------------------------------QPLLLGPDMKSADVMSK 121
           LL ++  K                                   +  LLGPD+K  D MS+
Sbjct: 63  LLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDSMSR 122

Query: 122 TAELDNQGLV--------EQDEGLEKLEETIRSTKHIALAVNEELDLHTRLIDDLDQHVD 150
              +DNQG+V        EQDEGLE+LE T+ STKHIALAV+EELDL TRLIDDLD HVD
Sbjct: 123 VTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVD 182

The following BLAST results are available for this feature:

BLAST of CmaCh16G009240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KK7	5.3e-56	53.68	Syntaxin-52 OS=Arabidopsis thaliana OX=3702 GN=SYP52 PE=1 SV=1	[more]
Q9SA23	4.5e-55	53.48	Syntaxin-51 OS=Arabidopsis thaliana OX=3702 GN=SYP51 PE=1 SV=1	[more]
Q54IX6	2.9e-06	31.68	Probable syntaxin-8B OS=Dictyostelium discoideum OX=44689 GN=syn8B PE=3 SV=1	[more]
O88983	6.6e-06	23.71	Syntaxin-8 OS=Mus musculus OX=10090 GN=Stx8 PE=1 SV=1	[more]
Q9Z2Q7	6.6e-06	23.71	Syntaxin-8 OS=Rattus norvegicus OX=10116 GN=Stx8 PE=1 SV=1	[more]

BLAST of CmaCh16G009240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79590.1	3.8e-57	53.68	syntaxin of plants 52	[more]
AT1G79590.2	3.8e-57	53.68	syntaxin of plants 52	[more]
AT1G16240.1	3.2e-56	53.48	syntaxin of plants 51	[more]
AT1G16240.2	3.2e-56	53.48	syntaxin of plants 51	[more]
AT1G16240.3	4.9e-41	51.31	syntaxin of plants 51	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	GENE3D	1.20.5.110		coord: 94..156 e-value: 9.1E-17 score: 62.8
None	No IPR available	PANTHER	PTHR19957:SF297	TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 73..183
None	No IPR available	PANTHER	PTHR19957:SF297	TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..72
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 73..183
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 1..72
None	No IPR available	CDD	cd15841	SNARE_Qc	coord: 97..151 e-value: 3.61693E-17 score: 69.8948
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 91..154
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 87..154 e-value: 0.0072 score: 25.5
IPR000727	Target SNARE coiled-coil homology domain	PFAM	PF05739	SNARE	coord: 129..179 e-value: 1.2E-8 score: 34.8
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 92..154 score: 12.250988

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009240.1	CmaCh16G009240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048278	vesicle docking
biological_process	GO:0006906	vesicle fusion
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding