CmaCh16G009140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G009140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5-like
Location	Cma_Chr16: 6867097 .. 6876408 (+)
RNA-Seq Expression	CmaCh16G009140
Synteny	CmaCh16G009140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTTGAAGTTTCCATTGCATACGAATCTCCAAGTTTTCAACCAAAATTGTAAGATCACCTTTGATCGTATCAGATTCGGAGCTCCAGTGAAAGATGGCGAGCGAGAACGAGCCGGCGAAGCTCCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCACGAACCTCTTGTCGCATATTACTGTAATTCTTAGCTTTAATTCTTCTTCTAGGCCCTAGTTGTTTTGATTCTTGATTGCCTGGGCGTTTTCCATGTTTAGGTCGATTATATGCTATGGAACGTGGGCTAAGGATTCCACAGGGCGAACGTACCAAGACCACGAATGCGCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGTTTCGGATTTACTGCTTTTGTTGTTAATCACAATATTTGTTCAAGTTAGTGGATTGTATGGATGGTTTGGTACTGAATTTTGGATAGCCGGCAAACTGGAACTACTGCTTATTATGGGTTTTTGTTTGAAAATTTGGTAATTTATCTTACTGGAATAGTGGCTGCATATTACCTAGAATCAGGGACGATCGAAGCTACTTGGGGATTGGGAAAATATTTGGTATAGGCGGTCTTTCTAATAAAGTACTATGTGAATTTTATTTTTCATTATCTGATCATTTTTTAATTGATGTACATCTTTTTTCGGTTTTACTTTTCAAAATTTTATCAATTCTATTAGGGTTACATCTAGTAACAAATTTATTCGTTTGTATTCCGACATATCTAAATTGGATACAGAAATATAATTACAGACAAATAAAACGCAATGTATATGATATTTATCAACTGCAAACTGAGGGGAGATTTAAGATGGGGGGAATTGGTGTATACTTATAGGAAGTTCACGGGCTCTTTAAGATGTTGCATATTTTGGAATCAGCCTTCAGTTTTAAGATTAATCTATCAAAATGTTATGTTGTTGTGTGGTTGCTTGAAGTTTAATCCTTCCAATATACATTCTGCGGCCTTTGGTTCTTCATGGGCTGAGAGTTATTGGCCTCTGTCCTCTACCTTGGTCTACCTACCGGTGGCAATTCTGAGTTGGTATATTTTGGAATTGATTTGGGAGAAATTTCTTTAACGATCTAGGAATTGGAAAAAAGAGTTTCATTTGTTCTCTCAAGTATTCTGGTCTCTCAACTTTCCTTTCTTAGAATTCTAACCAAATTTGCGCATTGCACTCTGAAGTAAACTAGTTTGTTCTGGAGTTGCTTGTTTGAGCAATTGATTTGGGGCCGATTTTTGGGCTCCTATGTGGTTTCACTTGTGCGTGATAGAAATTGTAGGTCCATGTTGGAGGAGGTTGTAATGGATAAAGGAAAAGTTCTTAGGTTTTTATTCTATACATACACACACATATATATATTGCAGTTTTGGGGGCGTATTTGGCTTGAAGACATAGTAGGATCTTTAGAGGTTGAATGGTCATGATACGTTCTTTGAAAAAACATTAGGTTTAACACCTCCTTGTGGGCATTGGCCAGGATAGTGTTGCCCACTTCACAATCTCCATGTCTTGGAGGGTTCTTCGAATAAGCATCTCCCATGAACCATTTTGGTCAACCACAAATCTACAACTGATGCATTCTTTGCACTGGATAAAGCAACAGAAAGATAAAATGATAGATATTTGTTCTTTGTCCAATCCATAGGTCTGCCCAAAAATGTTTGAGTTGACAATACAACACTAGGTTTCTATAGCACATTCCTTTGTCCAGTCTAAACATACATTATACATAACTTGGGCTTTCCAACAACCGACTCATTAACTCAGAAATGATAAATTCATGTGCCAAACATCCCCAAAGAAATTCTTTACCTTACGTTGTGACTTTGGAGATTTAACATTGAAAAATGTGTCATTTGGAGTCTGGAGGAAAGTTATTTTTGCAAAATTTGGCTCTACCAAGGGATTTTCATTGTTCTTTTTTTTTTTTTTTTAATTTTATTTTATTTTATTTATTTATATAATATAATGGTGAACCAAAACTTTCATAGAGAGAAAAATGAAGGAAAACAAGGGCATACAAAAATAAAGCCTTGAGAAAAGGAAGCAAACCACAAAAAAGATACTCTTAAGCTAGAGAAATAAGATATAAAGGATAATTACTAAATAACTTTGGTCTGGCAAGTAACTTCATAACCGAAGCCGAAAGAGAAAAATGGAATCTAAGAAGGTACCAAGCATCACTGAGAGGTCTCTCAATCTCTCTAACAATTTTAGGAAAACCTTTTTGGTCCCAGAGTTTGCAGGAATAGGTTCATTTGGTTCTTAGGTTTTAAAATGTACACTTCCAGTTTCTGAGTTTTGAAAAATAGGATTAAAACGGGTATTTGGTGGTACTTTTTCTATCTACAAGTTATTAAAGTTCTTTTTAATGTAATGTGGCATTTGAATTTTTTTTTAAAAATAAAACTCTATCCTCTCTCTATTCTCATCCTCTCTCCAACCTCTCTCTTTCGCTCTTTTTCCTCTCTCCTTCCTTTCAGTCAAATTAGTGTCATTGTCTTTGTGACGCTGCCTATATGATCAAGGGGTTGAGCTCGAAGTAGAAGGAGGGTTGTGGGAGTCAATGAGGGTGAGGATTCCTAGGTGACGAATGATAGTTTATTCTTCTTTTTTGAGTTCGATCTAAATTGATGAATTTAGACTTAGCTGGGATTTGCAATCATTACAGCCCACAAAGTTTAAGGCTAATGGATCACAAAAAATCAAGGGAAAATGTGAACGGTCGATTGTGTGACAAAGGGGATGGAATACGGTAGATTTTGGACATGAACAGTTGAGAAATAGAGTTGATCTTTGAGGAGTTTAGCACCAGTGATCTCAAATTGTTGTCATTGATCTCGAGAAGTGGTAAAAATAAATGGTTGGAAGGGATGGCTTGTCGTGGGGACCCCCTATAGTTAGGAGAGAGCATGGAAAGGGGGATAGGAGAAATAAAGGAGGGAGGGAGGATTAAGAGGAGAGAGAATGGAAAGAGAGAATGAGAGAAGAGAAATTATGTTATTTTTAATTTTAAATGCCACGCAAACAATAAAAATAATAAAAATTACTCCATTACCATTACTATATCAAATATAAAAAGTATTGCTAGAGACCGTCTTAAACCTATTTCTCAAAACTCACAGACTTCTTAAACATATTCTTGAAAACTCAGATACCAAAATAGTACATTTTAAAATTTCCAGGGCCAATGAATCTATTCCTGAAAACGTAAGGCACAGTATAATTTTCCAAAATTCTATTATTCCTCTTACCCCCAAGACCCCACAAAATTACACAAACCCGAACTCACCATAAGTGATCATCTCTCACGAAAGGGTTGGTGGAGAAAAAACTCATCGGTCGTCTCTCTATAACTTTGAGAACTGGCAAAGCAATAGCCAAACTCCTCAAAGAAACAACTCCAAATTGCTCCTTCAAAGTACTATCTCCGAAGAATATGATTGAGATCTTCAATTGTTCTCTTGCAAACAATAGAACAAAAGGGTTCTACCAAATTGGACACCTTACTTGAAATCCTATCCAAGGTTTTAACTCTTCTTTGAATACTTGCCACATAAAGAATTTAACCTTCTTGGGAATTTTCACCTTCCACACTAAGGAAAAAAAAAATAGAAACTCTCGATGAGGAGGGACTAACCAAACATCGAAAGGAGGTGTACAAAAAGTGCCTTTGGATGTGTTAGGACTTAAAGACAAACATTCTTCCTCTCATGGTTAAAGAGAATCTCTCTAATCAAAGATAAAGGAGCTAGAACATTCGTGGTTCAATGAAGGGCAGAACCCAAATGAAAGAGAAAGAAATTCCTTAAGGAGGACAACGGGGAAGCATGGAGCAGAGAGTTATATCCACTGACCATTTATCCCAAAAGTATCTCTCTCATCCCTTATTGAATAGTGAGTAAATTGAGAAAGAACAGGGAGCTAAGTAGAAATATATTTCCACGACTTTTCAATATTTTGAACAGGTAATGATTTTTAGGTTTTGATGTTCGCTTGAAGGCAAGGTTCTTATGTTTAGCCTTGAAATTTACGCCTTCTTTGAACCATGGCCTTCACCTCATAAGAGATGGTTATGTCTCTATGAAAAGGTTCTAAGGCTTCCACCCCTTATGTAATGATTAGAAAAATGATATTAATTTGTTTCATTCTTCAAGAAATATAAAAGTTTAAGTTGTGACAATTTGAACTATTACTACGTTTACTGTGACTTTAAGAATATTGAATGACAAAAATGTATTGTATAAGGTGATTTATTAATGATAATAGTAGTGATGTTAAAGATATCATTTTAGGATTTTTGTTTAAGTGGCAATTGAGAGGGATATTTTCCTTTTCTTCTTTCATATATATATATATATATATATATTGATAAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAATTATAGGAAGTAAAAATATTAGACAGTTTATACCAAGATATAGCTTGGTAAACAACATTGTCGAAAAGTTTTGTGTAGGTCTGTGTCGTTTCTGCAAATATTCTTAGATTTCTTTCTTTCCACAGATTCCAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGACTTTTGCGTTCTTTTATATTTTTATGTTTAGTGGTACTTAGTCATGCCATTTTAGAATTTGTAAATTGTTTTCCATTAATTTTGAGGCTTACACTTTTTTAGGGGAAAAGTCTCAAGGTTGCCTCTAACCTTCAAAACATTGTAGGTTTCAGAAATACCTTAAATCCCACCTATTATCCGTTCAAATTGGCTGAGGATCGTACTACTTACAATGACCTTGTGCTCTAAGGTGTCAAATTCATGATGGAACAGCCATAACCATGTAGCCAACAACGCTTTGTTGCTTGCCCTTATGTTACTTACACCTGAGCAGCTAACCCTAGCAAGGTTCAACCGCTTAGACCCCACCTCCACCTCACAAGATGAGATCCTTTCCATTCATCAATCTCCTCCCATAAGCTTCTCAAAAACCTTACTAACTGCACTAAGAACTCTAACCAGGGACATGAATAAATTGGGATGCCACTTAGGACCAACTGAATAGAATAAGCCAACCGTTTTCGTGAAGAAACTTTTCTTCCAAAATTCAAGCCTTTTTCAAACTTTTTGATAGGACGATGTTGGTTGGCTTTGGCAACGCTACTACTGTCTTGCTCGATTATTGGATTGACAATGACATCCTTCCAAAAGACTACCCTGGGCTTTTCTCCCTACAAACTCCGAAAGAAACTGTCACCAGGAATCCCTTCTCTCACTATTCAAATTTTGCTTTTAGAAGGAACCACTCGATTTTTAAGATTCTTGAATGGGCTTCTCTCCCAGTTTGCTCTCTAACTTCTTCTTTGGCTCTCTTCGGGATAATTGGACTTGGACTTGGATGATGGAGATCTTTTCTTGTAACTCCATAATTTTTTTGTCTTCATTAATAAAAAGAACGTCGAACCTAACCTTTACATGAAGTTATTTGACAATCCAAACATCCCAAGAAAGTCAAGTTCTTTCTTTGGGAGCTTTCTCATGAGACTATTAGTACTCACGATAAGCTTGCAAGGCCTCCAGACTCTATGTTCCTTCTAGCTCCTACAATGTAAGTTCTCCTAGGCCATTTGGAAGAGCTGTGTTGTAATCTTCTTTGGCTTACGGCTTCATTTTCCTCCTGGTATATAATTTCATTTATACAATGAAATTACTTTCTCATTAAAGAAAAAGAAAGAAAAGAAAAAGAAAAAAGAAAAAAGAAAAAAAACGTAGGACCTTTGATTAGAACATGGAGAAATATGAATCCTGCTTGAGTTCATTCATCACATTTCTACCTCGTTAGTAACTTTATGCCTTTGGTTGGTATTATGTGCTTACTATCCATCTATCGTTTTCAGGATAAGAAGGCACTCAACCTCGGGCCTGATGATAGTTTGCATCTAGAGGGGTTTGCATTGAGTGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGTATGACGATGAATCAATGATCTTCCTTCATATAGAAAAATATTTCAATTCTTGAACTTTTAGTTAGTTACAAAGATTCATAGTTAACTTGCTTGACTTGGAATATTGCTTTTAAAAACTATGATTGAATTAGATTGGATGACTTTTAGTGCTCAATTTTATAAATTATTGTTCACATTGGAATCATTATTCACAAAGAAAGCTACTATTTATTCTAAAAAATATAAGTTATCTAGAAGAACACACTAAAGAAAAGAAGAATATGGTTAAAAATGAAAATAAACTAAGAATAAAAATAAGGAAAAAATAAAACCAATTGTCCGAACATATTTTTATTTGATTTTTGTTTGAAAAAATTGAAAACCATTTTGAAAATAGTTCTGTAACAAGTCTTGTAGTTTCTTAATTCGAAGCAGCTAAAATTGTTTTCAAATTGTATTGAAATCTGTTTCAGTATGGTTGTTGATTGAGCTTAACCATCGTTCTTATTTGTCACTTCCTTTAATGGATATATAAGATAAGATGCATAGTTAGATCATAACTTGAAGTTTTATCTTTGTTGAAGTGTCAAAAGATGTCATTAATGTGATTTGGATACTTGTAGGCTGTATGGTTTCACTCATCTAAGTTATGGCATCCTTTTTTCATTATATTTGTGTGCTTCAAACATTATTTGAGTAAGGATAGAGAAATCATATATTTTGTTTCTGAGTTTCTAATTTCTTTAAGATTTTATTCACAGGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTCGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACGTGAGTTTCTTTCCTGATTGACCTTGTTTTAGTTTTCTGAATCAGATCTTTGCTTAATCTTTAAAAAAAAAATTCTATTCATAGCTGGAGCAAAAACGGAAATACGCCGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAGCCACAGCCTGGTCCACCTTCTGGTGATGAAGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGTATGGTTTGCTGCCTAACTCTAGTTTAACTCTTGTACTACCTACTAAAAATGTTAGATCTCACATCAGTTGGGGAGGAAAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTGGGAAAACCCAAAAAGGACAATATCTGCTAACGGTGGGCTAGGGTCGTTACAAATGGTATTAGAGTTAGACACAGGGCGATGTGTCAGCGAGGAGGCTGAGCCCCAAAGGGGGGTGGACATAAGGTGATGTGCCAGCAAGGATGCTAGGTCCCAAAGGGGGTGGATTTTGTGGGAGTCCCACATTGATTGGAGAAAGGAATGAGTGTCAGCGAGGACGCTGGGCCTCGAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACGTCTCCCTAGCAGAGATGCATTTTAAAAACCTTGAAGGGAAGTCTGAAAGGGAAAGTCCAAAAAGGACAATATCTTCTAGTAGTGGGCTAGAGTTGTTACAAATGGTATCAGAGCTAGACATCGGGCGATGTGCTAGCGAGGAAGCTAAGCCCCGAAGGGGGGTGGACATGAGGCGATATGACAGCAAGGATGTGGGGCCCCAAAGGGGGTGGGATTTGGTGGGGGTCTCACATCGATGGGAGAAAGGAACGAGTGTTAGCGAGGACGCTAGGCCTCGAAGAGGGGTGGATTGTGAGATCCCACATTGGTTGGGGAGGAGAACAAAACATTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACGCGTTTTAAAAACCTCGAGGGGAACTCAGAAAGGGAAAACTCAAAGAGGACAATATTTGTTAGCGGTGGACTAGGGTCGTTACAAAAAACTCAATGATGCTTAATGTCTATAATTAATAAACAACAGACCACACAAACGGATAGTGATATTATTTCTTAGCACACCAAAAGAAAGGAATATTATTTCTCAGTTTAGTTTTTATCATTCTGGATTGTGCTTTATTAGTTTTACGCTGAAGTATCTTACATATGTAAAACAACTATCAAGGAGGTTTTGAGGCTGCTTAGGTATTTACTATGATGTTCGTTTTTATAGGATGCAAGACCAGGAGAACCTCAAGTCTCGAGAACTCGATCACAATCGGATTCCTTACCCCAGGTTTATGATAAGGTTAATGATGATCATTCAAATGTCCCACAAACTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACATGTCTCCGCCTGCTCGATTCCATAATGACGTCGACAATCAGCACCCTTCAAATATTCCATCATACCCTGCAGCTGGTTATCCATCCCATGAGTTTCATCTACCTCCTCCGAGGAATGAACCAGACAGTTCCTCTTACTCTCAGCCATATCACCACATCCAATCCTACTCAGAGCATCAACAGCCTTTGCCTCATAATTATGTATCTAATGAAACCTCCCCAAATTACTCATATTCCCATTTCCAATCTTATCCAAGTTTCTCGGAAAGTAGCCTCCCGACCGCCCCTTCTCACCATCCGACCTATTACCAAGGATCCGACGCTTCATACTCTTCTCACGTGACTCCTCCTGCCAGCTACCCATCAGCTTCCCAATATCATTCAAACGGAAGAGAGGGGATGGCCTCAGAACCTCAACCTACAGCAGCTCCAGCCAAGTCATACCATTATGACAGCAACTACCAGCCATCTCCTGAGAAAATTGCTGAGGCACACAAGGCTGCGAGGTTTGCAGTAGGGGCTCTGGCATTTGATGATGTTTCTGTTGCAGTAGAACACTTGAAGAAATCACTGGAATTGTTGACTAACCCTTCAGCCGGTCTGTGATATTCTGCTTTTCTGCTCGACCGACTAATGTGTGGATTTCTTCTGCTATCATACCAGGTTTGATATGTAAATTTTAATACATTTGTGCCCGAGAAAATAGATCGATCGTAAATGTTATTGTGAAAGTTTCATGATGTTTGTTTCTATAATTCCTTCTGAGGTATCTCTTACTCCTATAGTTGAAGCAATATTCATTTAAGAATGTCCAACTCTATGTTGGTGGTTGAATATGAGTTTAGATTGCATGAAGAAATAAATGATAGAAACTGAAATTCCTGGGATCTGTGTTTAG

mRNA sequence

AAGATTTGAAGTTTCCATTGCATACGAATCTCCAAGTTTTCAACCAAAATTGTAAGATCACCTTTGATCGTATCAGATTCGGAGCTCCAGTGAAAGATGGCGAGCGAGAACGAGCCGGCGAAGCTCCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCACGAACCTCTTGTCGCATATTACTGTCGATTATATGCTATGGAACGTGGGCTAAGGATTCCACAGGGCGAACGTACCAAGACCACGAATGCGCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGATAAGAAGGCACTCAACCTCGGGCCTGATGATAGTTTGCATCTAGAGGGGTTTGCATTGAGTGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTCGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACCTGGAGCAAAAACGGAAATACGCCGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAGCCACAGCCTGGTCCACCTTCTGGTGATGAAGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGATGCAAGACCAGGAGAACCTCAAGTCTCGAGAACTCGATCACAATCGGATTCCTTACCCCAGGTTTATGATAAGGTTAATGATGATCATTCAAATGTCCCACAAACTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACATGTCTCCGCCTGCTCGATTCCATAATGACGTCGACAATCAGCACCCTTCAAATATTCCATCATACCCTGCAGCTGGTTATCCATCCCATGAGTTTCATCTACCTCCTCCGAGGAATGAACCAGACAGTTCCTCTTACTCTCAGCCATATCACCACATCCAATCCTACTCAGAGCATCAACAGCCTTTGCCTCATAATTATGTATCTAATGAAACCTCCCCAAATTACTCATATTCCCATTTCCAATCTTATCCAAGTTTCTCGGAAAGTAGCCTCCCGACCGCCCCTTCTCACCATCCGACCTATTACCAAGGATCCGACGCTTCATACTCTTCTCACGTGACTCCTCCTGCCAGCTACCCATCAGCTTCCCAATATCATTCAAACGGAAGAGAGGGGATGGCCTCAGAACCTCAACCTACAGCAGCTCCAGCCAAGTCATACCATTATGACAGCAACTACCAGCCATCTCCTGAGAAAATTGCTGAGGCACACAAGGCTGCGAGGTTTGCAGTAGGGGCTCTGGCATTTGATGATGTTTCTGTTGCAGTAGAACACTTGAAGAAATCACTGGAATTGTTGACTAACCCTTCAGCCGGTCTGTGATATTCTGCTTTTCTGCTCGACCGACTAATGTGTGGATTTCTTCTGCTATCATACCAGGTTTGATATGTAAATTTTAATACATTTGTGCCCGAGAAAATAGATCGATCGTAAATGTTATTGTGAAAGTTTCATGATGTTTGTTTCTATAATTCCTTCTGAGGTATCTCTTACTCCTATAGTTGAAGCAATATTCATTTAAGAATGTCCAACTCTATGTTGGTGGTTGAATATGAGTTTAGATTGCATGAAGAAATAAATGATAGAAACTGAAATTCCTGGGATCTGTGTTTAG

Coding sequence (CDS)

ATGGCGAGCGAGAACGAGCCGGCGAAGCTCCTTCTGCCCTACCTCCAGCGAGCGGACGAATTGCAGAAGCACGAACCTCTTGTCGCATATTACTGTCGATTATATGCTATGGAACGTGGGCTAAGGATTCCACAGGGCGAACGTACCAAGACCACGAATGCGCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGATAAGAAGGCACTCAACCTCGGGCCTGATGATAGTTTGCATCTAGAGGGGTTTGCATTGAGTGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCAAGCATTTTCTTCGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGACCTGGAGCAAAAACGGAAATACGCCGTCTGGAAAGCAGCAGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAGCCACAGCCTGGTCCACCTTCTGGTGATGAAGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGATGCAAGACCAGGAGAACCTCAAGTCTCGAGAACTCGATCACAATCGGATTCCTTACCCCAGGTTTATGATAAGGTTAATGATGATCATTCAAATGTCCCACAAACTCCTCAGGTCTATGACAACATGAACAACCACACTTCTTTAAACATGTCTCCGCCTGCTCGATTCCATAATGACGTCGACAATCAGCACCCTTCAAATATTCCATCATACCCTGCAGCTGGTTATCCATCCCATGAGTTTCATCTACCTCCTCCGAGGAATGAACCAGACAGTTCCTCTTACTCTCAGCCATATCACCACATCCAATCCTACTCAGAGCATCAACAGCCTTTGCCTCATAATTATGTATCTAATGAAACCTCCCCAAATTACTCATATTCCCATTTCCAATCTTATCCAAGTTTCTCGGAAAGTAGCCTCCCGACCGCCCCTTCTCACCATCCGACCTATTACCAAGGATCCGACGCTTCATACTCTTCTCACGTGACTCCTCCTGCCAGCTACCCATCAGCTTCCCAATATCATTCAAACGGAAGAGAGGGGATGGCCTCAGAACCTCAACCTACAGCAGCTCCAGCCAAGTCATACCATTATGACAGCAACTACCAGCCATCTCCTGAGAAAATTGCTGAGGCACACAAGGCTGCGAGGTTTGCAGTAGGGGCTCTGGCATTTGATGATGTTTCTGTTGCAGTAGAACACTTGAAGAAATCACTGGAATTGTTGACTAACCCTTCAGCCGGTCTGTGA

Protein sequence

MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLMNQLEKDKKALNLGPDDSLHLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSANDARPGEPQVSRTRSQSDSLPQVYDKVNDDHSNVPQTPQVYDNMNNHTSLNMSPPARFHNDVDNQHPSNIPSYPAAGYPSHEFHLPPPRNEPDSSSYSQPYHHIQSYSEHQQPLPHNYVSNETSPNYSYSHFQSYPSFSESSLPTAPSHHPTYYQGSDASYSSHVTPPASYPSASQYHSNGREGMASEPQPTAAPAKSYHYDSNYQPSPEKIAEAHKAARFAVGALAFDDVSVAVEHLKKSLELLTNPSAGL

Homology

[Close]

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot
Match: Q9SZ15 (Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=LIP5 PE=1 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 3.5e-124
Identity = 260/437 (59.50%), Postives = 309/437 (70.71%), Query Frame = 0


Query: 1   MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLM 60
           M++ NEPA+ LLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTN++L+SL+
Sbjct: 1   MSNPNEPARALLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNSILMSLI 60

Query: 61  NQLEKDKKALNLGPDDSLHLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 120
           NQLEKDKK+L L PDD++H+EGFALSVFAKADKQD AGRADL TAKTFYAASIFFEI+SQ
Sbjct: 61  NQLEKDKKSLTLSPDDNMHVEGFALSVFAKADKQDRAGRADLGTAKTFYAASIFFEILSQ 120

Query: 121 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDE-DLSVPSSTPTSANDARPG 180
           FGP+ PD+EQK KYA WKAADIRKA+KEGRKP PG P  D+ DLS+PSS P+ + D    
Sbjct: 121 FGPVPPDIEQKHKYAAWKAADIRKAIKEGRKPTPGDPVDDDTDLSIPSSGPSGSYDHSAS 180

Query: 181 EPQVSRTRSQSDSLPQVYDKVNDD--HSNVPQTPQVYDNMNNHTSLNMSPPARFHNDVDN 240
           +   + T      L   +D  NDD  H   P+ PQ               P RF+++  N
Sbjct: 181 D--TNTTSHHRTELDPPHDS-NDDSSHHQFPEVPQ------------HPLPPRFYDNPTN 240

Query: 241 QHPSNIPSYPAAGYPSHEFHLPPPRNEPDSSSYSQPYHHIQSYSE---HQQPLPHNYVSN 300
            +P+++P  P + YPS++ HLPPP   P  S Y  PY H Q Y +      P P NY S+
Sbjct: 241 DYPADVPPPPPSSYPSND-HLPPPTG-PSDSPYPHPYSH-QPYHQDPPKHMPPPQNYSSH 300

Query: 301 ETSPNYSYSHFQSYPSFSESSLPTAPSHHPTYYQGSDASYSSHVTPPA-------SYPSA 360
           E SPN S  +FQSYPSFSESSLP+   H+P++YQ  +  YSS  + PA       S P  
Sbjct: 301 EPSPN-SLPNFQSYPSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPPP 360

Query: 361 SQYHSNGREGMASEPQPTAAPAKSYHYDSNYQPSPEKIAEAHKAARFAVGALAFDDVSVA 420
             Y SNGR  +A    P  + A+ YHYDS+YQP PEK+AEA KAARFAVGALAFD+VS A
Sbjct: 361 PPYSSNGRINIAPVLDPAPSSAQKYHYDSSYQPGPEKVAEALKAARFAVGALAFDEVSTA 418

Query: 421 VEHLKKSLELLTNPSAG 425
           VEHLKKSLELLTNPSAG
Sbjct: 421 VEHLKKSLELLTNPSAG 418

[Close]

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot
Match: Q5R5W5 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii OX=9601 GN=VTA1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.4e-25
Identity = 75/193 (38.86%), Postives = 104/193 (53.89%), Query Frame = 0


Query: 9   KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLMNQLEKDKK 68
           K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct: 15  KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKI--DSKTPECRKFLSKLMDQLEALKK 74

Query: 69  ALNLGPDDSL--------HLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 128
              LG ++++        HLE +AL +F  AD +D AGR   N  K+FY AS+  ++I+ 
Sbjct: 75  --QLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITV 134

Query: 129 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSAND--ARP 188
           FG L  +  + RKYA WKA  I   LK G  PQ GP   +ED  V  +    A     +P
Sbjct: 135 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDVEENEDAGAASLPTQP 194

Query: 189 GEPQVSRTRSQSD 192
            +P  S T   S+
Sbjct: 195 TQPSSSSTYDPSN 203

[Close]

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot
Match: Q9NP79 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens OX=9606 GN=VTA1 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.4e-25
Identity = 74/193 (38.34%), Postives = 104/193 (53.89%), Query Frame = 0


Query: 9   KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLMNQLEKDKK 68
           K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct: 15  KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKI--DSKTPECRKFLSKLMDQLEALKK 74

Query: 69  ALNLGPDDSL--------HLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 128
              LG ++++        HLE +AL +F  AD +D AGR   N  K+FY AS+  ++I+ 
Sbjct: 75  --QLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITV 134

Query: 129 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSAND--ARP 188
           FG L  +  + RKYA WKA  I   LK G  PQ GP   +ED  +  +    A     +P
Sbjct: 135 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQP 194

Query: 189 GEPQVSRTRSQSD 192
            +P  S T   S+
Sbjct: 195 TQPSSSSTYDPSN 203

[Close]

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot
Match: Q55B11 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum OX=44689 GN=vta1 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-23
Identity = 101/383 (26.37%), Postives = 196/383 (51.17%), Query Frame = 0


Query: 1   MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQ--GERTKTTNALLVS 60
           +AS     K ++PYL+++ +L+KH+ L+AYYCR++A++  + I Q  G      +  +V 
Sbjct: 3   LASLPPALKPIIPYLKQSQQLEKHDLLMAYYCRVHAIQMAMDIKQKMGASGSFLSIPIVK 62

Query: 61  LMNQLEKDKKALNL---GPDDSLHLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFF 120
           +++Q + DK  L       D++ ++E FA+  F+ AD QD AG+A+  T+ TFY+A +FF
Sbjct: 63  ILDQGDADKAKLGSRLDEEDEAKYVEAFAMKAFSFADTQDRAGKANKATSTTFYSAFLFF 122

Query: 121 EIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSAND 180
            ++   G +  +++ K+KYA W++ DI  A+K G  P P PPS D++    +S  T   D
Sbjct: 123 NVLEHMGEVSEEVKLKKKYASWRSVDINTAIKNGVAPSP-PPSIDQNEEGGASGETE-ED 182

Query: 181 ARPGEPQVSRTRSQSDSLPQVYDKVNDDHSNVPQTPQVYDNMNNHTSLNMSPPARFHNDV 240
           A+  + ++    +++       +  N   S +  T  V + M++  S    P    +N+ 
Sbjct: 183 AQLKQLEMELNLAKATLQQDNNNNNNMSSSTIITTNSVSEGMSSSLSFPSFPSIPNNNNN 242

Query: 241 DNQHPSNIPSYPAAGYPSHEFHLPPPRNEPDSSSYSQP-YHHIQSYSEHQQPLPHNYVSN 300
           +N    + PS+P+          P P N  ++S+ ++P +    S+     P P    ++
Sbjct: 243 NNNTTPSFPSFPS---------FPSPTNSDNNSNNNKPAFPSFPSF-----PSPPTTTNS 302

Query: 301 ETSPNYSYSHFQSYPSFSESS-----LPTAPSHHPTYYQGSDASYSSHVTPPASYPSASQ 360
           +++P  S+  F S PS + SS      P+ PS  P++   ++++ +++ +   S+P+   
Sbjct: 303 DSAP--SFPKFPSTPSPTNSSSNNSQQPSFPS-FPSFTSPTNSNNNNNNSQQPSFPTFPN 362

Query: 361 YHSNGREGMASEPQPTAAPAKSY 373
             +  R+   S+ +      + Y
Sbjct: 363 STNQKRQVFESDEEEEQEEVEDY 366

[Close]

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot
Match: Q9CR26 (Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus OX=10090 GN=Vta1 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-22
Identity = 89/278 (32.01%), Postives = 130/278 (46.76%), Query Frame = 0


Query: 9   KLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLMNQLEKDKK 68
           K +  +L+ A E  K +P+VAYYCRLYAM+ G++I    +T      L  LM+QLE  KK
Sbjct: 15  KSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKI--DSKTPECRKFLSKLMDQLEALKK 74

Query: 69  ALNLGPDDSL--------HLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 128
              LG ++++        HLE +AL +F  AD +D AGR   N  K+FY AS+  ++I+ 
Sbjct: 75  --QLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITV 134

Query: 129 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDEDLSVPSSTPTSAND--ARP 188
           FG L  +  + RKYA WKA  I   LK G  PQ GP   +E+  V  +    A     +P
Sbjct: 135 FGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQP 194

Query: 189 GEPQVSRTRSQSDSLPQVYDKVN-DDHSNVP-QTPQVYDNMNNHTSLNMSPPARFHNDVD 248
            +P  S     S+  P  Y  +     ++ P  TP    +    TS  + P         
Sbjct: 195 PQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQP--------- 254

Query: 249 NQHPSNIPSYPAAGYPSHEFHLPPPRNEPDSSSYSQPY 275
              P  +P+ PA     +       R  P+  + +Q Y
Sbjct: 255 --SPQTVPAAPAVDPDLYTASQGDIRLTPEDFARAQKY 277

[Close]

BLAST of CmaCh16G009140 vs. TAIR 10
Match: AT4G26750.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 446.4 bits (1147), Expect = 2.5e-125
Identity = 260/437 (59.50%), Postives = 309/437 (70.71%), Query Frame = 0


Query: 1   MASENEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLM 60
           M++ NEPA+ LLPYLQRADELQKHEPLVAYYCRLYAMERGL+IPQ ERTKTTN++L+SL+
Sbjct: 1   MSNPNEPARALLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNSILMSLI 60

Query: 61  NQLEKDKKALNLGPDDSLHLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQ 120
           NQLEKDKK+L L PDD++H+EGFALSVFAKADKQD AGRADL TAKTFYAASIFFEI+SQ
Sbjct: 61  NQLEKDKKSLTLSPDDNMHVEGFALSVFAKADKQDRAGRADLGTAKTFYAASIFFEILSQ 120

Query: 121 FGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDE-DLSVPSSTPTSANDARPG 180
           FGP+ PD+EQK KYA WKAADIRKA+KEGRKP PG P  D+ DLS+PSS P+ + D    
Sbjct: 121 FGPVPPDIEQKHKYAAWKAADIRKAIKEGRKPTPGDPVDDDTDLSIPSSGPSGSYDHSAS 180

Query: 181 EPQVSRTRSQSDSLPQVYDKVNDD--HSNVPQTPQVYDNMNNHTSLNMSPPARFHNDVDN 240
           +   + T      L   +D  NDD  H   P+ PQ               P RF+++  N
Sbjct: 181 D--TNTTSHHRTELDPPHDS-NDDSSHHQFPEVPQ------------HPLPPRFYDNPTN 240

Query: 241 QHPSNIPSYPAAGYPSHEFHLPPPRNEPDSSSYSQPYHHIQSYSE---HQQPLPHNYVSN 300
            +P+++P  P + YPS++ HLPPP   P  S Y  PY H Q Y +      P P NY S+
Sbjct: 241 DYPADVPPPPPSSYPSND-HLPPPTG-PSDSPYPHPYSH-QPYHQDPPKHMPPPQNYSSH 300

Query: 301 ETSPNYSYSHFQSYPSFSESSLPTAPSHHPTYYQGSDASYSSHVTPPA-------SYPSA 360
           E SPN S  +FQSYPSFSESSLP+   H+P++YQ  +  YSS  + PA       S P  
Sbjct: 301 EPSPN-SLPNFQSYPSFSESSLPSTSPHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPPP 360

Query: 361 SQYHSNGREGMASEPQPTAAPAKSYHYDSNYQPSPEKIAEAHKAARFAVGALAFDDVSVA 420
             Y SNGR  +A    P  + A+ YHYDS+YQP PEK+AEA KAARFAVGALAFD+VS A
Sbjct: 361 PPYSSNGRINIAPVLDPAPSSAQKYHYDSSYQPGPEKVAEALKAARFAVGALAFDEVSTA 418

Query: 421 VEHLKKSLELLTNPSAG 425
           VEHLKKSLELLTNPSAG
Sbjct: 421 VEHLKKSLELLTNPSAG 418

[Close]

BLAST of CmaCh16G009140 vs. TAIR 10
Match: AT3G59100.1 (glucan synthase-like 11 )

HSP 1 Score: 55.8 bits (133), Expect = 9.5e-08
Identity = 35/139 (25.18%), Postives = 67/139 (48.20%), Query Frame = 0


Query: 1   MASENEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVS 60
           M SE  P+ L  + P L+ A+E++K  P VAY CR +A E+  R+      +        
Sbjct: 38  MDSELVPSSLASIAPILRVANEIEKDNPRVAYLCRFHAFEKAHRMDATSSGRGVRQFKTY 97

Query: 61  LMNQLEKDKKAL--NLGPDDSLHLEGFALSVFAKADKQDHAGRADLNTAKTFYAASIFFE 120
           L+++LEK+++     L  +D   ++ +  + + K  K+    R     A+ +  AS+ ++
Sbjct: 98  LLHRLEKEEEETKPQLAKNDPREIQAYYQNFYEKYIKEGETSRKPEEMARLYQIASVLYD 157

Query: 121 IISQFGPLQPDLEQKRKYA 136
           ++    P      + R+YA
Sbjct: 158 VLKTVVPSPKVDYETRRYA 176

[Close]

BLAST of CmaCh16G009140 vs. TAIR 10
Match: AT1G05570.1 (callose synthase 1 )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-05
Identity = 34/125 (27.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 3   SENEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLM 62
           SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +L+
Sbjct: 32  SEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALL 91

Query: 63  NQLEKDKKALNLG--PDDSLHLEGFALSVFAK-----ADKQDHAGRADLNTAKTFYAASI 119
            +LE++ +    G    D+  ++ F    + K      +  D A RA L   K +  A++
Sbjct: 92  QRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRAQL--TKAYQTAAV 151

[Close]

BLAST of CmaCh16G009140 vs. TAIR 10
Match: AT1G05570.2 (callose synthase 1 )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-05
Identity = 34/125 (27.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 3   SENEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLM 62
           SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +L+
Sbjct: 32  SEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALL 91

Query: 63  NQLEKDKKALNLG--PDDSLHLEGFALSVFAK-----ADKQDHAGRADLNTAKTFYAASI 119
            +LE++ +    G    D+  ++ F    + K      +  D A RA L   K +  A++
Sbjct: 92  QRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRAQL--TKAYQTAAV 151

[Close]

BLAST of CmaCh16G009140 vs. TAIR 10
Match: AT2G31960.1 (glucan synthase-like 3 )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-05
Identity = 34/125 (27.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 3   SENEPAKL--LLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQGERTKTTNALLVSLM 62
           SE  P+ L  + P L+ A+E++   P VAY CR YA E+  R+      +       +L+
Sbjct: 32  SEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALL 91

Query: 63  NQLEKDKKALNLG--PDDSLHLEGFALSVFAK-----ADKQDHAGRADLNTAKTFYAASI 119
            +LE++ +    G    D+  ++ F    + K      +  D A RA L   K +  A++
Sbjct: 92  QRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALQNAADKADRAQL--TKAYQTAAV 151

The following BLAST results are available for this feature:

BLAST of CmaCh16G009140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZ15	3.5e-124	59.50	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 OS=Arabidopsis thaliana ...	[more]
Q5R5W5	6.4e-25	38.86	Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii OX=9601...	[more]
Q9NP79	8.4e-25	38.34	Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens OX=9606...	[more]
Q55B11	2.7e-23	26.37	Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoi...	[more]
Q9CR26	3.0e-22	32.01	Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus OX=1009...	[more]

BLAST of CmaCh16G009140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26750.1	2.5e-125	59.50	hydroxyproline-rich glycoprotein family protein	[more]
AT3G59100.1	9.5e-08	25.18	glucan synthase-like 11	[more]
AT1G05570.1	2.0e-05	27.20	callose synthase 1	[more]
AT1G05570.2	2.0e-05	27.20	callose synthase 1	[more]
AT2G31960.1	2.0e-05	27.20	glucan synthase-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.420	Immunoglobulin FC, subunit C	coord: 381..420 e-value: 1.7E-13 score: 51.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..377
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..196
IPR041212	Vta1, C-terminal	PFAM	PF18097	Vta1_C	coord: 382..419 e-value: 9.0E-11 score: 41.2
IPR023175	Vta1/Callose synthase, N-terminal domain superfamily	GENE3D	1.25.40.270		coord: 3..152 e-value: 1.1E-48 score: 167.0
IPR039431	Vta1/callose synthase, N-terminal	PFAM	PF04652	Vta1	coord: 13..148 e-value: 9.1E-42 score: 142.4
IPR044538	Vacuolar protein sorting-associated protein Vta1-like	PANTHER	PTHR46009	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG	coord: 1..423

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009140.1	CmaCh16G009140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
biological_process	GO:0015031	protein transport
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0005771	multivesicular body