CmaCh16G009080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G009080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ethylene-responsive transcription factor 3-like
Location	Cma_Chr16: 6781618 .. 6782283 (+)
RNA-Seq Expression	CmaCh16G009080
Synteny	CmaCh16G009080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGGACCTTCGATTCCGCAGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGCCCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCCATCTCCTTCTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATAAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCCACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATAGCCTCCTCCTCCATGGTCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA

mRNA sequence

ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGGACCTTCGATTCCGCAGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGCCCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCCATCTCCTTCTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATAAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCCACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATAGCCTCCTCCTCCATGGTCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA

Coding sequence (CDS)

ATGAGAAGAGGGAGAGGGGCGGCGACGGCGACGGCTGCGGCGCGTGAGGCAGCACCTCCCGGATCGGAGAGGAGATACAGAGGAGTTCGAAAGCGGCCATGGGGTAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTATGGCTAGGGACCTTCGATTCCGCAGAGGACGCCGCCCGTGCTTACGACAACGCCGCTATAACCCTCCGTGGCCCTAAAGCTAAAACCAACTTCCCTCTCGCTAATCCCATCTCCTTCTTCGATTACCCTCCTTATCCTCACCCTCACCCGCACCCTCATCCCGTCAACGCTCCAGATCCCTTCCTCGATCCTCGATTTCAGATAAATAACCCTCACAGACCTACTTCCAGCAGTTTGAGCTCTACCGTCGAATCCTTCAGTGGGCCCCACCCTCCTTCTGCCGCTGCCACAACCGCTTCTCCCTCCCGCCGCTACCCACGCACGCCGCCTCTCCTCCCTGAGGATTGTCATAGCGACTGCGATTCCTCCTCCTCCGTCATCGACGACGGAGACGACATAGCCTCCTCCTCCATGGTCCCTCGGAAACCCCCTCTGCCGTTCGATCTGAACATTCCACCCTCCGAACTTCTTGATTTGGCCGCCGATGATCTTGGATGTACCGCCTTGTGCCTCTGA

Protein sequence

MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDLAADDLGCTALCL

Homology

[Close]

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.7e-58
Identity = 147/240 (61.25%), Postives = 161/240 (67.08%), Query Frame = 0


Query: 1   MRRGRGAATATAAAREAAPPG--SERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 60
           MRRGR AA       E    G   E R+RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA
Sbjct: 1   MRRGRAAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 60

Query: 61  EDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNA-PDPFLDPRF- 120
           EDAARAYD AA  LRGPKAKTNFPL          PY H H      N   DPF+D RF 
Sbjct: 61  EDAARAYDAAARALRGPKAKTNFPL----------PYAHHHQFNQGHNPNNDPFVDSRFY 120

Query: 121 QINNP---HRPTSSSLSSTVESFSGPHPPSA--AATTASPSRRYPRTPPLLPEDCHSDCD 180
             +NP    RPTSSS+SSTVESFSGP PP A    TTAS SR+Y R+PP++P+DCHSDCD
Sbjct: 121 PQDNPIISQRPTSSSMSSTVESFSGPRPPPAPRQQTTAS-SRKYTRSPPVVPDDCHSDCD 180

Query: 181 SSSSVID----------DGDDIASSSMVPRKPPLPFDLNIPPSELLDLAADDLGCTALCL 222
           SSSSV+D          D D+IASSS    + PL FDLN+PP  + D  ADDL CTALCL
Sbjct: 181 SSSSVVDHGDCEKENDNDNDNIASSSF---RKPLLFDLNLPP-PMDDAGADDLHCTALCL 225

[Close]

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot
Match: O80339 (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.7e-58
Identity = 141/234 (60.26%), Postives = 159/234 (67.95%), Query Frame = 0


Query: 1   MRRGRGAATATAAAREAAPPGS--ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 60
           MRRGRG++        AA  GS  E R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDSA
Sbjct: 1   MRRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSA 60

Query: 61  EDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPH---PHPHPHPVNAPDPFLDPR 120
           E+AARAYD+AA  LRGPKAKTNFP+ +       PP P+           N  DPF+D R
Sbjct: 61  EEAARAYDSAARNLRGPKAKTNFPIDS-----SSPPPPNLRFNQIRNQNQNQVDPFMDHR 120

Query: 121 F------QINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSD 180
                  Q    +RPTSSS+SSTVESFSGP P +    T   ++RYPRTPP++PEDCHSD
Sbjct: 121 LFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPAT---TKRYPRTPPVVPEDCHSD 180

Query: 181 CDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDL--AADDLGCTALCL 222
           CDSSSSVIDD DDIASSS   R PP  FDLN PP + +DL   ADDL CT L L
Sbjct: 181 CDSSSSVIDDDDDIASSSR-RRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL 225

[Close]

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot
Match: Q9LDE4 (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ERF7 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-53
Identity = 140/245 (57.14%), Postives = 159/245 (64.90%), Query Frame = 0


Query: 1   MRRGRGAATATAAAREAAPPG-SERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAE 60
           MR+GRG++    A    A     E RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFDSA 
Sbjct: 1   MRKGRGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAV 60

Query: 61  DAARAYDNAAITLRGPKAKTNFPL----ANPISFFDYPPYPHPHPHPHPVNAPDPFLDPR 120
           DAARAYD AA  LRGPKAKTNFP+    ++P+    Y    +    P   N  DPF+D R
Sbjct: 61  DAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHR 120

Query: 121 ------FQINNPH----RPTSSSLSSTVESFSGPHPPSAAATTASPS------RRYPRTP 180
                 FQ         RP SSS+SSTV+S SGP P  AAA ++S +      +RYPRTP
Sbjct: 121 LYGGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTP 180

Query: 181 PLLPEDCHSDCDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDLAA---DDLGC 222
           P+ PEDCHSDCDSSSSVIDDGDDIASSS   RK P  FDLN PP + +DL A   DDL C
Sbjct: 181 PVAPEDCHSDCDSSSSVIDDGDDIASSSS-RRKTPFQFDLNFPPLDGVDLFAGGIDDLHC 240

[Close]

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot
Match: Q9LW49 (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-22
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 23 ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 82
          E  YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AA   RGPKAKTNFP
Sbjct: 24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83

Query: 83 L 84
          L
Sbjct: 84 L 84

[Close]

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot
Match: O80340 (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ERF4 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-22
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 23 ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 82
          E RYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFP
Sbjct: 22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81

[Close]

BLAST of CmaCh16G009080 vs. TAIR 10
Match: AT1G50640.1 (ethylene responsive element binding factor 3 )

HSP 1 Score: 225.3 bits (573), Expect = 4.7e-59
Identity = 141/234 (60.26%), Postives = 159/234 (67.95%), Query Frame = 0


Query: 1   MRRGRGAATATAAAREAAPPGS--ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 60
           MRRGRG++        AA  GS  E R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDSA
Sbjct: 1   MRRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSA 60

Query: 61  EDAARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPH---PHPHPHPVNAPDPFLDPR 120
           E+AARAYD+AA  LRGPKAKTNFP+ +       PP P+           N  DPF+D R
Sbjct: 61  EEAARAYDSAARNLRGPKAKTNFPIDS-----SSPPPPNLRFNQIRNQNQNQVDPFMDHR 120

Query: 121 F------QINNPHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSD 180
                  Q    +RPTSSS+SSTVESFSGP P +    T   ++RYPRTPP++PEDCHSD
Sbjct: 121 LFTDHQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPAT---TKRYPRTPPVVPEDCHSD 180

Query: 181 CDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDL--AADDLGCTALCL 222
           CDSSSSVIDD DDIASSS   R PP  FDLN PP + +DL   ADDL CT L L
Sbjct: 181 CDSSSSVIDDDDDIASSSR-RRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL 225

[Close]

BLAST of CmaCh16G009080 vs. TAIR 10
Match: AT3G20310.1 (ethylene response factor 7 )

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-54
Identity = 140/245 (57.14%), Postives = 159/245 (64.90%), Query Frame = 0


Query: 1   MRRGRGAATATAAAREAAPPG-SERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAE 60
           MR+GRG++    A    A     E RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFDSA 
Sbjct: 1   MRKGRGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAV 60

Query: 61  DAARAYDNAAITLRGPKAKTNFPL----ANPISFFDYPPYPHPHPHPHPVNAPDPFLDPR 120
           DAARAYD AA  LRGPKAKTNFP+    ++P+    Y    +    P   N  DPF+D R
Sbjct: 61  DAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHR 120

Query: 121 ------FQINNPH----RPTSSSLSSTVESFSGPHPPSAAATTASPS------RRYPRTP 180
                 FQ         RP SSS+SSTV+S SGP P  AAA ++S +      +RYPRTP
Sbjct: 121 LYGGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTP 180

Query: 181 PLLPEDCHSDCDSSSSVIDDGDDIASSSMVPRKPPLPFDLNIPPSELLDLAA---DDLGC 222
           P+ PEDCHSDCDSSSSVIDDGDDIASSS   RK P  FDLN PP + +DL A   DDL C
Sbjct: 181 PVAPEDCHSDCDSSSSVIDDGDDIASSSS-RRKTPFQFDLNFPPLDGVDLFAGGIDDLHC 240

[Close]

BLAST of CmaCh16G009080 vs. TAIR 10
Match: AT3G15210.1 (ethylene responsive element binding factor 4 )

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-23
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 23 ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 82
          E RYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFP
Sbjct: 22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81

[Close]

BLAST of CmaCh16G009080 vs. TAIR 10
Match: AT5G44210.1 (erf domain protein 9 )

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 23 ERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 82
          E  +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFP
Sbjct: 30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89

Query: 83 L 84
          L
Sbjct: 90 L 90

[Close]

BLAST of CmaCh16G009080 vs. TAIR 10
Match: AT5G64750.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-21
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 9   TATAAAREAAPPGSE--RRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD 68
           TATA++  ++  G +  RRYRGVR+RPWG++AAEIRDP+K  RVWLGTFD+AE AARAYD
Sbjct: 166 TATASSETSSFSGDQPRRRYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYD 225

Query: 69  NAAITLRGPKAKTNFP 83
            AA+  RG KAK NFP
Sbjct: 226 EAALRFRGNKAKLNFP 241

The following BLAST results are available for this feature:

BLAST of CmaCh16G009080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXS8	6.7e-58	61.25	Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ...	[more]
O80339	6.7e-58	60.26	Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LDE4	2.9e-53	57.14	Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LW49	5.9e-22	80.33	Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
O80340	7.7e-22	83.33	Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]

BLAST of CmaCh16G009080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50640.1	4.7e-59	60.26	ethylene responsive element binding factor 3	[more]
AT3G20310.1	2.1e-54	57.14	ethylene response factor 7	[more]
AT3G15210.1	5.5e-23	83.33	ethylene responsive element binding factor 4	[more]
AT5G44210.1	1.6e-22	80.33	erf domain protein 9	[more]
AT5G64750.1	1.8e-21	65.79	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 48..64 score: 69.09 coord: 26..37 score: 67.73
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 25..88 e-value: 1.9E-37 score: 140.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 25..74 e-value: 5.1E-14 score: 52.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 25..82 score: 23.669914
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 25..82 e-value: 1.47346E-32 score: 110.439
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 24..84 e-value: 3.5E-28 score: 99.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 1..199
None	No IPR available	PANTHER	PTHR31677:SF144	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED	coord: 1..199
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 25..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G009080.1	CmaCh16G009080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity