CmaCh16G008280 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G008280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr16: 4672219 .. 4672867 (+)
RNA-Seq Expression	CmaCh16G008280
Synteny	CmaCh16G008280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGGTAATAGTCACGAAGAAAACTACCAGGAGAAGAGACTATCGAGCCATGCAAATTGGGATTGAAGAGGACGTATTCAAGGGCGCGGTCAAGGATACAATTCTAACATCCAGTGCTTTAAATGTAAAAAATATGGTCATTACGTGAATGATTGTAATTCTAACAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA

mRNA sequence

ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA

Coding sequence (CDS)

ATGAAGATGAAAGAGTCAGAAAATGTATTTGACTACATTACACGTGTACAGACCGTGGCGAATCAGCTAAATCAGAACGGAGAAATGTTACCCGAGACGCAGGCTGTGGAGAAAATCCTAAGGTCGTTAACAGACAACTTCGAGAATGTCGTATGTGCAATAGAAGAGTTGAAGGACCTAGCGAAGTTCACAGTCGATGAGCTTCCCGGTTCTCTCGAGGCACACGAGCAACGTAAGAAAAAGGAGGAGTCACTCGATCAAGCACTTCAGACGAAGGCGTCGATAAAGGATGGAAAAATACTCTACTCACAGAATTTTCGAGGTAGAGATAGTGAGAGCCGCGGGAATGGTCAAGCTGCTCAAGATGTTACAATGGTGGCAAAATGGGTCAGTATGAAAGATTGTCGAGCCAAAGAGAAGGTGGAAGAAACCATCAACCTAGCCTTGGATGACACAACAAGTGGAGGCATCCTCTTGATGGCCTAA

Protein sequence

MKMKESENVFDYITRVQTVANQLNQNGEMLPETQAVEKILRSLTDNFENVVCAIEELKDLAKFTVDELPGSLEAHEQRKKKEESLDQALQTKASIKDGKILYSQNFRGRDSESRGNGQAAQDVTMVAKWVSMKDCRAKEKVEETINLALDDTTSGGILLMA

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh16G008280 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G008280 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..92
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..81 e-value: 5.6E-16 score: 58.6
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 2..138
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 2..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G008280.1	CmaCh16G008280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity