CmaCh16G007870 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G007870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1218)
LocationCma_Chr16: 4325952 .. 4328446 (-)
RNA-Seq ExpressionCmaCh16G007870
SyntenyCmaCh16G007870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGACTTGGTCCTCTGTTCTTAAAGAGGGCAGAATAGAACTTAGAGAAAGGCTTTCAAGGAAGAAACAGATCTGCGAAGCTCTTAAACTGCTCAACAATGGCGTCAAAGCTACTCCTTCTCTCAGTCTTTGTGTTTGATGTCATCGCTTTTGGGTTAGCCATTGCAGCTGAGCAAAGGAGAAGCACTGTAAAGCTCTTACTCTTTTCCCCTCTCTCTTTACTTCGCTTTATTGTTGCATATTTTAGTGAAAATTTGTGGCTTTACTTCAAATCTTGGTGATCTATGGCCTTTCTCTTCTGGGTTTGCTTAGTTCATTTGGCTCTTAATATGGGTTCTGAATGCAGAGACGGAATATGAGGCTACAGCCTTTCCCTTCACCATTGGGTTTTTAGGTTTAAGGGATTTAGAACTTTCCCGCTACTTTTCTCAGCTGGAAAAGCGCTCAGATCTACTTTTATTGTTTTTCTTAAACGCCAATTGTCCTGCTCGTACAGAAACTAATTGTGAATGATAACACATAATTTCAATGCACTTTTTGAGTTCTTTGTGTTCTTCAGGTTCTTCTAGATCGAGTGTGTGTTGTTGTGTGATTCTGATAGTGTTTTGTTATTGGGATTGATTGTGTAAGATAAGATGGGAGGTTGTGATATACCATAACAAATCTCGAAAAACTACTCTTTTCATGTAACGATGCTTAACCGTGGTACCGATATTATTCGGGGCGGAGAACGAGCTTCTACGAACCTTCTTCGATGTGAGATTTGCAAATCTTGAAAGACTACTCTTTCGTTTAAGGATACTTAATCACTAGGTTGAGATTGCTTTAAGGAGAGATCTTGTAAAAGTCTAAGCCCGCTGGTAACAAATATTGTTCTTTTTGGACTTTCCCTTTTAGCTTCCACTCAATGTTTTAAAATGCGTATGCTAGGGAGAGGTTTCGACCCTTATAAAGAATATTTCGTTTTCCTCTCCAACCAATATGGGATCTCACTATCTACCCCCTTTAGGGCCCAGCATCTTCGTCGGCACTTGTTCCCTTCTCTAATCGATGTGGGACTCCCATTCCACTCACCTCTTTGAGCCCAGCGTTCTTGCTAGCACACTTTGTGTCCACCCCCCTTCGGGGTTCAGCCTCCTCGTTGGCACATCGCTCGTTGTCTGGCTCTAATATCATTTGTAACCGCCCAAGCCCACTGTTAGTTAATATTGTCCTCTTTAAGCTTTCCCTTCTAAGCTCCCCTTCAAGGTTTTAAAATGCATATGATAGAGAGAGGTTTCTACGCCCTTTTAAAGAATGTTTCGTTCTCTTCCCAACTAACGTGGGATCTCAAAGACAAATCTAAAGATGAATTCTTCTTCAAAGGCAGATCTGATCTTCTTAAGCCCCACATTGTTTGTTTTTGATCCACAAGCCATTACTTTCCCCTCACTTTCTTTACCTGCTCCCAACAAGAACAGCCAAACTCATAACTCAGTGGGGAACTGTTTGAAAGGTCAATAATTGTCTTCTTTTTGTAAAAGATTTAGTTGAAGTACTTTGCATTCTTATCTGTTCTACGAAGGACAAGATATTTATCTCTAAAAAAACTTTGAATGTTCTAAAGAGTTCATAATTATTTTAATTCCATTTGATTTGAAATGATTTCACAGGCAAAGATAGTTGAAGACACTGATGCCAAAAAAAACTATTGTGTATATGACTCAGACATTTCAACTGGCTTGGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTTTGCTGCGGTAAGCCTCTGAGTCCGGACGGTTCGAGGGCTTGGGCCATCATTCTCTTCATAACTTGCTGGTAAGTCGAGTCGAGCAAACTAACATGTTACGACATCGAAATTTTGTATAATAATATGATATTGTCTACTGATATGAAATAATCTGTTTCAGGGTGTTTTTTTTAATCGCTGAGATTTGCGTACTCGCGGGTTCTGCTAGGAATGCATACCACACCAAGTACAGAACATTGCTTACTGATACTCCTCCCTCTTGTCAAATGCTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCATTTTCTTAACTTCCATTGTTTCGCAGTCCTACTACGTTTGCTACTCGAGGGCCCGGGAGAGCTTCCAATCACCCAACGAAGACACTGGCATCGGCATGAGTTCGTACCGATGAGGTTCATCGTAAATGTCGTTTTCGATCACGTTATGCTTCGATATAGTTTTGCCTTACATTACATTACACCTTTTGTAGCTTTCAATCCAGTTTATAGAAGCCTATAGGTTGTCGTCTTTCTCTCTACCGTTCGATGTTTCGACAAAACTCTGTGGTCGATAGTCTTCGTGTCGGTATCAGAAAAACATTGCTTGTTTGATGGTTTAGGCTATTAGAAAATGAAGATTTATGTTGCAGGATAATGTTTCTTATTCTTATTCTTTCATCCTTTTGATTATTTTCCCAG

mRNA sequence

CTAGACTTGGTCCTCTGTTCTTAAAGAGGGCAGAATAGAACTTAGAGAAAGGCTTTCAAGGAAGAAACAGATCTGCGAAGCTCTTAAACTGCTCAACAATGGCGTCAAAGCTACTCCTTCTCTCAGTCTTTGTGTTTGATGTCATCGCTTTTGGGTTAGCCATTGCAGCTGAGCAAAGGAGAAGCACTGCAAAGATAGTTGAAGACACTGATGCCAAAAAAAACTATTGTGTATATGACTCAGACATTTCAACTGGCTTGGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTTTGCTGCGGTAAGCCTCTGAGTCCGGACGGTTCGAGGGCTTGGGCCATCATTCTCTTCATAACTTGCTGGGTGTTTTTTTTAATCGCTGAGATTTGCGTACTCGCGGGTTCTGCTAGGAATGCATACCACACCAAGTACAGAACATTGCTTACTGATACTCCTCCCTCTTGTCAAATGCTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCATTTTCTTAACTTCCATTGTTTCGCAGTCCTACTACGTTTGCTACTCGAGGGCCCGGGAGAGCTTCCAATCACCCAACGAAGACACTGGCATCGGCATGAGTTCGTACCGATGAGGTTCATCGTAAATGTCGTTTTCGATCACGTTATGCTTCGATATAGTTTTGCCTTACATTACATTACACCTTTTGTAGCTTTCAATCCAGTTTATAGAAGCCTATAGGTTGTCGTCTTTCTCTCTACCGTTCGATGTTTCGACAAAACTCTGTGGTCGATAGTCTTCGTGTCGGTATCAGAAAAACATTGCTTGTTTGATGGTTTAGGCTATTAGAAAATGAAGATTTATGTTGCAGGATAATGTTTCTTATTCTTATTCTTTCATCCTTTTGATTATTTTCCCAG

Coding sequence (CDS)

ATGGCGTCAAAGCTACTCCTTCTCTCAGTCTTTGTGTTTGATGTCATCGCTTTTGGGTTAGCCATTGCAGCTGAGCAAAGGAGAAGCACTGCAAAGATAGTTGAAGACACTGATGCCAAAAAAAACTATTGTGTATATGACTCAGACATTTCAACTGGCTTGGGAGTTGGAGCATTTCTCTTCCTGATGGCTAGCCAGATCCTCATAATGGTGGCTAGCCGCTGCTTTTGCTGCGGTAAGCCTCTGAGTCCGGACGGTTCGAGGGCTTGGGCCATCATTCTCTTCATAACTTGCTGGGTGTTTTTTTTAATCGCTGAGATTTGCGTACTCGCGGGTTCTGCTAGGAATGCATACCACACCAAGTACAGAACATTGCTTACTGATACTCCTCCCTCTTGTCAAATGCTGAGAAGAGGAGTGTTTGCTGCAGGAGCAGCTTTCATTTTCTTAACTTCCATTGTTTCGCAGTCCTACTACGTTTGCTACTCGAGGGCCCGGGAGAGCTTCCAATCACCCAACGAAGACACTGGCATCGGCATGAGTTCGTACCGATGA

Protein sequence

MASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFLFLMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHTKYRTLLTDTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARESFQSPNEDTGIGMSSYR
Homology
BLAST of CmaCh16G007870 vs. TAIR 10
Match: AT4G27435.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 245.4 bits (625), Expect = 3.7e-65
Identity = 119/172 (69.19%), Postives = 141/172 (81.98%), Query Frame = 0

Query: 1   MASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFL 60
           MASK++   VFVF++IAFGLA+AAEQRRSTA++V+DT+ + NYCVYDSD +TG GVGAFL
Sbjct: 1   MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHT 120
           F +ASQILIM+ SRCFCCGKPL P GSRA A+ILFI  W+FFLIAEIC+LAGS  NAYHT
Sbjct: 61  FSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHT 120

Query: 121 KYRTLLTDTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARESFQSP 173
           KYRT+  D PP CQ LR+GVFAAGA+F+F  +IVSQ YY  Y  A E+  SP
Sbjct: 121 KYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEASLSP 172

BLAST of CmaCh16G007870 vs. TAIR 10
Match: AT1G61065.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-62
Identity = 123/182 (67.58%), Postives = 147/182 (80.77%), Query Frame = 0

Query: 1   MASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFL 60
           MAS LLLL VFVFD+IAFGLA+AAEQRR+T +I  ++    +YCVYD DI+TGLGVG+FL
Sbjct: 1   MASVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRES-RDLSYCVYDKDIATGLGVGSFL 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHT 120
            L+ASQ+LIMVASRC CCG+ L+P GSR+WAI LFIT WVFF IA++C+LAGS RNAYHT
Sbjct: 61  VLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHT 120

Query: 121 KYRTLLTDTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARESFQSPNEDTGIGM 180
           KYR    +T PSC+ LR+GVF AGAAFI LT IVS+ YYV  SRA++ FQ P+ D GI M
Sbjct: 121 KYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD-FQ-PSRDPGIRM 179

Query: 181 SS 183
           SS
Sbjct: 181 SS 179

BLAST of CmaCh16G007870 vs. TAIR 10
Match: AT3G15480.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-61
Identity = 112/174 (64.37%), Postives = 141/174 (81.03%), Query Frame = 0

Query: 1   MASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFL 60
           MASKL+++ VF+ D+IA GLAIAAEQRRS  K+  D D + +YCVY +DI+T  G GAF+
Sbjct: 1   MASKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFV 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHT 120
            L  SQ+LIM ASRCFCCGK L+P GSRA AIILF+ CWVFFLIAE+C+LA S RNAYHT
Sbjct: 61  LLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHT 120

Query: 121 KYRTL-LTDTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARESFQSPN 174
           +YR +   + PPSC+++R+GVFAAGAAF   T+IVSQ YYVCYSRAR+++Q+P+
Sbjct: 121 QYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAYQNPS 174

BLAST of CmaCh16G007870 vs. TAIR 10
Match: AT1G52910.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 224.9 bits (572), Expect = 5.1e-59
Identity = 107/174 (61.49%), Postives = 137/174 (78.74%), Query Frame = 0

Query: 1   MASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFL 60
           MASKL+++ VF+ D+IA GLAIAAEQRRS  K+V D + +  +C Y SDI+T  G GAF+
Sbjct: 1   MASKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFV 60

Query: 61  FLMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHT 120
            L  SQ++IMVASRCFCCGK L P GSRA  I+LF+ CWVFFLIAE+C+LAGS RNAYHT
Sbjct: 61  LLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHT 120

Query: 121 KYRTLLT-DTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARESFQSPN 174
            YR +   + PPSC+++R+GVFAAGA+F   T+IVSQ YY+ YSRAR+ +Q+P+
Sbjct: 121 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGYQTPH 174

BLAST of CmaCh16G007870 vs. TAIR 10
Match: AT1G13380.1 (Protein of unknown function (DUF1218) )

HSP 1 Score: 174.5 bits (441), Expect = 8.0e-44
Identity = 84/185 (45.41%), Postives = 125/185 (67.57%), Query Frame = 0

Query: 2   ASKLLLLSVFVFDVIAFGLAIAAEQRRSTAKIVEDTDAKKNYCVYDSDISTGLGVGAFLF 61
           AS L+ + V    ++AFG +IAAE+RRS  K ++D      +CVYDSD++TG GVGAFLF
Sbjct: 6   ASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLF 65

Query: 62  LMASQILIMVASRCFCCGKPLSPDGSRAWAIILFITCWVFFLIAEICVLAGSARNAYHTK 121
           L++S+ L+M  ++C C G+PL+P   RAW+II FI+ W+ FL+AE CV+AG+ +NAYHTK
Sbjct: 66  LLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query: 122 YRTLLTDTPPSCQMLRRGVFAAGAAFIFLTSIVSQSYYVCYSRARES---FQSPNEDTGI 181
           Y   L+    SC  LR+G+F AGA FI  T +++  YY+ ++++  S    ++    + I
Sbjct: 126 Y---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSPPAHKANRSSSNI 185

Query: 182 GMSSY 184
           GM+ Y
Sbjct: 186 GMAGY 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT4G27435.13.7e-6569.19Protein of unknown function (DUF1218) [more]
AT1G61065.11.0e-6267.58Protein of unknown function (DUF1218) [more]
AT3G15480.11.1e-6164.37Protein of unknown function (DUF1218) [more]
AT1G52910.15.1e-5961.49Protein of unknown function (DUF1218) [more]
AT1G13380.18.0e-4445.41Protein of unknown function (DUF1218) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Modifying wall lignin-1/2PFAMPF06749DUF1218coord: 58..152
e-value: 1.9E-28
score: 98.8
NoneNo IPR availablePANTHERPTHR31769OS07G0462200 PROTEIN-RELATEDcoord: 1..184
NoneNo IPR availablePANTHERPTHR31769:SF56SUBFAMILY NOT NAMEDcoord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G007870.1CmaCh16G007870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane