CmaCh16G007350 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G007350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Location	Cma_Chr16: 3873806 .. 3876893 (+)
RNA-Seq Expression	CmaCh16G007350
Synteny	CmaCh16G007350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTACACGCTTGGGATTATTCTAGCGAAAGAGTTTCAATCTAAAATGCAAGGGTTTGGTTATTACAATCATCTCGGTAATTTGTGTGAGAGAGTCGGGGAAAATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTAAGTCTCTTTCTCTCTCTCGGTATTTCGGATTGTGATCGTGTATGCGCTACAAACACGTCTCCCTCAATTTTCTTTTCTTTATTGACGGAATTTTTGCTTGTTGCTTTTGGAAACTTTGTTTAACCCGTTATATGTTTGATTTCATTCATTTGCCTGCGCTATTTTCATCTGACGAAATGGAGGGAAACAAGGATGATGTTGATTATTGAATCATGTTAAGAAATTTAGTCCAAAATGATTTGATCCGATGTTTTTTGTTCCTTTATGATTGGAAGTCTCGCGAAAGGAGGTGTTTTGAAATTTGAATTCTGATTTAAATGTTGTTATTCTTTAGTGTTGTTAAATCATCGAGCGGGAGTATATACATGACACATTTGAGAATTAACGTGGATGAGGTTTCCAGTCGCTAAGAAGTTAATTTGATTTAAAGCTGATGGGAAAGAAGAAAACAAGAGGGGCAAACATATTTCTTGATCCATTACTGAGTGGCAGCAGCATAATTCTTGATTTCTATGATTGCATTAAGAAAAGAAAAGAAAAGACATGAACGAAAGTCTTGGATGTGGCTTGTGGTAGGCTTAATTTAATTCTGATTTCGCATAAATAAGACATGAACGAAAGGAAACGTAAACTCAGTAAATTTATTAGAGGGTTTAGGGCTTTTTAATAAAACAATTCTTCCCCAGGATGAAGGTCGTGGAAGTTTCTCCACCTCTAACCTTACGCCTGCTTTTTTTTTTGTTCTTTTGATAACCGGGAGTCAGAACTGTGCTCCTCTTAGCCAGGCACCCACATCCACCTCAAGGCCCAGACTTAAGGAGACATCAAGGGTTTTTAGTATTATGCTCACCCGAAGGTTCGAACTTGGGACCTCTAAGTTGGTATGACCGAGAGGCCGCAAACCCCTTGCCAATGGGATCATTCCATGTGGGCTTTCCCGCTTCTTTATTTTCTCCCATTTTTTTCTCTCTTTTCTCTCACGTTTCTGGGTGGGGTTGGGGGAGGGGAACAGATATTCTTCTGTTTTTTTGTTTGAGCTAATCTAATTCAGTGTTGTGAATTTATTTTCTAGTAACCCACTGAAACATATACTTGATGGCTCTTTACGTTGTTTGGGTACAATTACTTATTGTTATTTCTAAATACTATTGCAGAAGGAATAACCGTATGCAGGAGTGCAATGATGCTTGTGCTCCCTATATTTTATCTCTCACACAAACTTTCTTTCTTTATGTCAGGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGTGAGCTATAGCTTCAGTCAATTTATAATTTTTCCTCCACTTCTCAATATATTGGTTGCATTATGCATTGTTTCTCATTTGTGGCCCATTTTTTTTGGGTTTTCATTGTTTGCAGGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAGTTCTATTACATCTTTTAGATCCCTTTGAAGTTGCAATTTGGGTTTTGAAGAGGAAACTAGAACTGGATACTGCTGTGATGACATGTAGTGTTATTTTCTTCCCATTAAAGATGATGCTATATTATATTATCTTTTCAATTATTTTTAATACTTTCTAGAAATAACGAACTCTATTTTCTACATGCATTTCAATATTCATTTTGTTAAAAAAGAAAGTGCCCAAAATGTATAATTTCTAAGTAGTGGTGGATTTTCTGAGTTGATTTATGGTGCTAGTCGTTTTCTTAAAATAAATTATTGTTTTTATGAATGTAACATTAAACATAATGTAGATTTTACAAATAATTAGTGATTATGCCTCTATGCTTTCCACAGTCCACGTTCATAATTATGGACGTTTTTCTTTGTTTGGATTGGACAGTGTTTATAGTAATCAGAAACAAAAATTCATTAGCAGTCATTATCTCTGTTTACAGCTTACGTTGCTTGAGCATAATGTTGAAAGTTGAACTTAGGCCATTGATAATGTTGGCATCTGGAAGCTGAACCATCTAACTTAGTTTCCCAAGCAAACTTACAGCTATTATGTAACGAATAGATTTGCTACCAACGGCCGCTAGTAACTCATAATTACCTCGTTCAGCTTGCCAACAGTTTTCTGATCTATTTTACAACCTCCTCCTTTCATTTACCGAACCCTCACTTAACTTTGAGCTGCCCCATCGTCAAATATCAAATGGTAGTTCAATGTCTACCACTTTCTGTTGTTGATCATCTCTAGGTTTTCCACTTTTATTTTTTGGTAACTCTGTTTGTACAGTTTCTTCTCTCGTTATATTTTAGAACAACTGCAGTTGAAACTGGTCTTTAAAATCTTTACAAGCAAAAACTTCATAGCATCATTGTAGGAAGTAGACCTAGAGATGTACTGCAGCATTTATCAAAACTGGGTGAATTTGATGGATTTTGCACTCTGTTCGTTTCTCGTCGTCCTTTTGCGTTTATTATTTGTTGTGAAAATAATTGTTTCACTTCAAATAATAATTTATTTTTTTTAATTCTCAACCCTTTGTTTGTTCATCAGGTCCCGATGGTCTCTTTGAAGTGAAGCATCACTAAGGACTTGCTTTGGTTCGAGGGGACATCGAGCATAGGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

mRNA sequence

AAGTTACACGCTTGGGATTATTCTAGCGAAAGAGTTTCAATCTAAAATGCAAGGGTTTGGTTATTACAATCATCTCGGTAATTTGTGTGAGAGAGTCGGGGAAAATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAAGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

Coding sequence (CDS)

ATGGCAATGGCGATGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACCCCGCTCAGCCTAAACGCGGCTTCGCTTCCTCTGCCCACGACGATGCTCGTGAAACGGCAAAGTGGGAGAAAATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTGCATACCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTCCCGATGGTCTCTTTGAAGAATTCTACTTCTCACTTTGTTCCATATCAGAAAGACTTCATCGACTGGTTCGGTTGAAATTTTCTTTACTAAGGATGCATGGTCATTTTTCATTTGTTAAAATGCTATCAGGGTCTGATATCTTTTTTGTGTTGTCAAAACTATCCTTCCTGATTAATAAAATTAACTTTCCATCATTCGAAAGCTGA

Protein sequence

MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFEEFYFSLCSISERLHRLVRLKFSLLRMHGHFSFVKMLSGSDIFFVLSKLSFLINKINFPSFES

Homology

[Close]

BLAST of CmaCh16G007350 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A++RS L RA  R A +    PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFE
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A++RS L RA  R A +    PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          Y LSKGH H E+PPAYP++HIRNKEFPWGPDGLFE
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWGPDGLFE 95

[Close]

BLAST of CmaCh16G007350 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-23
Identity = 57/95 (60.00%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAF 60
          MA A++RS L RA  R A +    PKR F+SSA HDDA E AKWEKITY GI SC+ LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHYEEPPAYPYLHIRNKEFPWGPDGLFE 95
          Y LSKGH H E+PP          EFPWGPDGLFE
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWGPDGLFE 85

The following BLAST results are available for this feature:

BLAST of CmaCh16G007350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	2.4e-30	68.42	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmaCh16G007350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	1.7e-31	68.42	cytochrome c oxidase-related	[more]
AT4G37830.2	3.9e-23	60.00	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..99 e-value: 2.9E-13 score: 51.5
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..95
None	No IPR available	PANTHER	PTHR11504:SF6	CYTOCHROME C OXIDASE SUBUNIT 6A1-RELATED	coord: 1..94
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G007350.1	CmaCh16G007350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity