CmaCh16G007110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G007110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr16: 3701319 .. 3704499 (-)
RNA-Seq Expression	CmaCh16G007110
Synteny	CmaCh16G007110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGGCTTTTTAATGGCCGAGGCTAGAGCCGAGGGGACTCAATCTCTTCTAGCTTCGCAGCAATGGCTGTTAATCAGTGTCAGGTAATGGTGCTTTCCATTTGTTTTAAGTCGACATTTTCAATGCTTGTTATCAAATCACCAAAAGTAAGTTTCAATTAGCCCTTCTTCCTCTCGATTTCCTCCACACTGTAATTTTAGACTCGCAAATTTGGTTTATTCATTCATTTTTTACAGATTTCTGTTGTGCTGGAGTTTTTTTTGTTGGCTAAGAAATGAGAATCTGAAGATTCGTTTAAGCTTTATGATTTTATCACTTGTGTACTCATTTTGCTTTTGGCGTTGCTTTGGATAATGTATTTCCCTTTTTCGTTCCCTTTCAGACTGCAGCTGTGTCGAATGGAGTTCTCGTTCAAGAAAAACTAGCGAAAGTTACTAGACTTGACGAGAGGGAGCGTCATTGTTCTTTAGGTATTTTTCTTAATTACACTTTGTAATTGAAGTTTAGGTATTTTTCTTAATTACACTTTGTAAGTGAAGTAATCCGTAGTTTTAGATTTCCAGTTGCATGATGCTGATAATTAATTGTTTTCGCCCTTCAGAAATTTTGCCGATTCTCTTTGAGAAGACTTCGTTCCCCTTCCAAAATTCTTTGGTAAGTTCCTTTTTTATTGTGTATTGCTTTTCCACTATATTTTGGTGTTCTCTCTCTCTCTCTATTTGTGGCAACAACTTGATGGAGCTCACCATTTCTTCTTTTGGACATGGCGTCTGGGGCCATTGTTTTGTGCAAGAAGAAAATAACTTGGGCAGGTGTAGCAATTAAAGAAATTTATGAAAGTAGCCGAAAAGAAAATTTTTAGAGAAAAAAACTAGCAAATGACGCATTTAGATCGCGTATATCAGTTGTTAGTTATGAAAAATACATGATTATTGTACTTCATTGAAATTTTTGTTTGTTAATTATACATCAAATCACTGATTAGCTAACTTCAATTTCATCAAACTATTATCTATAATTATTATCTTACTTTATCATGTTGGTTACCTTTTGTTTTTTAAAAGCAATGTTGATTGCTTTCAAAATAGTTGATTAAGGTCTAAATTGTTTATTAGTTTCGCAATTATTTCTGTAAAAAAGCTATCCTCTTTAGAAACGCAAAGCAAAATCAACCCACTCACCTCTCACTTCAAATCCCCTTACAGGGCACAATCTCTTACTTTTGTTGTGGTCCTTTACCCACAACCATCAGTGCCCAATCAGATTATTCTCCCATTCAATGGCTCGTTTAATCTATTTCTATTGAATTTGTTTTATTATATTTGATGAATATATAGATCTCTTCAACTGTTTTTATCTAATAAAAAAGATAAACTGCTTTGAAAACAATCCTATTTACTTGTGGTTGTCATTCTCTTTCTCCTATTGGCCCTTGAAATGCATATCTATGTTCTTTGTTTCTTTTTTTTTTTTTCTCTAAACGTTATCATTTTTAAATGAATTCTAGATATTTATTTACCTTAGTTGATGATTCACACTTATAGTTATGCTATATATCTCGTGAGTTTCTTCTCAAATATTCTTTATTTGTTCAGGCCCGTGATTCCTCTAGCTTTTTAAGTACCGAGGGATTCGACAACAGTCCAGAGTGTGATCCACATTTGGCTTTCCTCAGCTTCCTGGAAGTTACCCATCCAACAAAAACTAGGATGTCATTGGAAACTTCAGATACTCGCTTGACTTGCCAGAACGTAATTGACATACACGTGAATGCTGGTGATGCTTGTTCCTCGTGCATAGTAAATATTGATATTGACAAGGACAAGCTGGACAAGCTCAAAACATCTAAATCCTGTGAAGGAACTTTTGAAAGCTTGAGAACTGAGAGTACATTAGTGGTAACTGAACTCATCTATTTACGCAAATTTTAGAGATGGCTTTTCCTTTTAAAAAAATGAAAATCATGATCCTAAAATGATAGCTAATTGATTTGTAAATTATTTAAACCACTCTTATCATGTTTCAATTCACTCTAGACATGTTTTTTAATCATTTGAAATCAATTTAATGGGTTTGATTTTACTTTTTTAAAAGTTTTGAAGACTAAGGTGTGTGATCTGTATTCTACGTCTCTTACAGCGCATTGAGAAGGTACTGCAGAGACAGTCCAGTCTTAAAATGGGGGCGAAACTTGTGCAATATTTGTTGGATCATGGACTAATGTTGCTGAAGTTCTCGTCTAAAGGTATGCACGCATTTGCTTTCTAGTGCTTGAAAAACGAAACAACTTGTATAGAAAATTTCAATCATCAAGGAAAATTCAATAATCTTTTATCAATACTTCAATTTCTTTTGTTATTCATCAGAAAAATCAGGGATCGAAAAGGCTCAGGACGCGTCAAACAACAGGTGGAGAAAATATAAACGTTCTGCTTCATTTGATTCAAGAAAGATTGTTGTTCTTTTCTCGGTATTGTGAGTACCAGATTCCTAATCTTCTTTATTTTGGTCCCAGTCCGATTACTGAGTTGAATTTTGAGCATTTACGAAAAAAATTTATCTTAGAAAGTCCAAAACACAAGTGACTTTTACTGCATAGCTATTGATTGAGGATAGGTGGAGGAGGTTCGAGAAAAAAGTGCTTTAAAATACTTAGACTACCTTTAAATGTTCTTAAATCTTTTGTAAGATCTGAAAATTGTTTTTTAGCACTTTGTGGAACACTACCCTTTTCCTTCTCATTTCATTTCTTTTTCTTTTTCCTTTTTCTTTTTCAGTTTCCCTTTTAAGGGGAAAAAAAATGCTTTTTTGATATAAACTATACCATCCTTGTAGAGAATCAAGATCCAATCTATCTAAATAATGCTACTCCAAGTTTTAAATAAATAAAAAGAAGCAACCTGTAGCTAACTTGATTGTTCATCAAAAAAAGAAATCTTTTATATCAGATGATTTTGCCATTTGCAGGTCAAGCTTGGGAACCTTGATATTGATATATTTGACTCTGAGAGTTAGGCAGCAGGGTGGGGATGGATCTGTTGCTATGTAGTCTTGTATGGTCCTTCTCCTTTGCCTTTCTACAAATCTATTAAAATAGTTTGTTTTTAAATTTGATGTTCTTATAGATCATCTTATTTGTACATAAATGTTCTTCCACTTCATGGCTCCCGTAGGAACTGA

mRNA sequence

TGATGGCTTTTTAATGGCCGAGGCTAGAGCCGAGGGGACTCAATCTCTTCTAGCTTCGCAGCAATGGCTGTTAATCAGTGTCAGACTGCAGCTGTGTCGAATGGAGTTCTCGTTCAAGAAAAACTAGCGAAAGTTACTAGACTTGACGAGAGGGAGCGTCATTGTTCTTTAGAAATTTTGCCGATTCTCTTTGAGAAGACTTCGTTCCCCTTCCAAAATTCTTTGGCCCGTGATTCCTCTAGCTTTTTAAGTACCGAGGGATTCGACAACAGTCCAGAGTGTGATCCACATTTGGCTTTCCTCAGCTTCCTGGAAGTTACCCATCCAACAAAAACTAGGATGTCATTGGAAACTTCAGATACTCGCTTGACTTGCCAGAACGTAATTGACATACACGTGAATGCTGGTGATGCTTGTTCCTCGTGCATAGTAAATATTGATATTGACAAGGACAAGCTGGACAAGCTCAAAACATCTAAATCCTGTGAAGGAACTTTTGAAAGCTTGAGAACTGAGAGTACATTAGTGCGCATTGAGAAGGTACTGCAGAGACAGTCCAGTCTTAAAATGGGGGCGAAACTTGTGCAATATTTGTTGGATCATGGACTAATGTTGCTGAAGTTCTCGTCTAAAGAAAAATCAGGGATCGAAAAGGCTCAGGACGCGTCAAACAACAGGTGGAGAAAATATAAACGTTCTGCTTCATTTGATTCAAGAAAGATTGTTGTTCTTTTCTCGGTATTGTCAAGCTTGGGAACCTTGATATTGATATATTTGACTCTGAGAGTTAGGCAGCAGGGTGGGGATGGATCTGTTGCTATATCATCTTATTTGTACATAAATGTTCTTCCACTTCATGGCTCCCGTAGGAACTGA

Coding sequence (CDS)

ATGGCTGTTAATCAGTGTCAGACTGCAGCTGTGTCGAATGGAGTTCTCGTTCAAGAAAAACTAGCGAAAGTTACTAGACTTGACGAGAGGGAGCGTCATTGTTCTTTAGAAATTTTGCCGATTCTCTTTGAGAAGACTTCGTTCCCCTTCCAAAATTCTTTGGCCCGTGATTCCTCTAGCTTTTTAAGTACCGAGGGATTCGACAACAGTCCAGAGTGTGATCCACATTTGGCTTTCCTCAGCTTCCTGGAAGTTACCCATCCAACAAAAACTAGGATGTCATTGGAAACTTCAGATACTCGCTTGACTTGCCAGAACGTAATTGACATACACGTGAATGCTGGTGATGCTTGTTCCTCGTGCATAGTAAATATTGATATTGACAAGGACAAGCTGGACAAGCTCAAAACATCTAAATCCTGTGAAGGAACTTTTGAAAGCTTGAGAACTGAGAGTACATTAGTGCGCATTGAGAAGGTACTGCAGAGACAGTCCAGTCTTAAAATGGGGGCGAAACTTGTGCAATATTTGTTGGATCATGGACTAATGTTGCTGAAGTTCTCGTCTAAAGAAAAATCAGGGATCGAAAAGGCTCAGGACGCGTCAAACAACAGGTGGAGAAAATATAAACGTTCTGCTTCATTTGATTCAAGAAAGATTGTTGTTCTTTTCTCGGTATTGTCAAGCTTGGGAACCTTGATATTGATATATTTGACTCTGAGAGTTAGGCAGCAGGGTGGGGATGGATCTGTTGCTATATCATCTTATTTGTACATAAATGTTCTTCCACTTCATGGCTCCCGTAGGAACTGA

Protein sequence

MAVNQCQTAAVSNGVLVQEKLAKVTRLDERERHCSLEILPILFEKTSFPFQNSLARDSSSFLSTEGFDNSPECDPHLAFLSFLEVTHPTKTRMSLETSDTRLTCQNVIDIHVNAGDACSSCIVNIDIDKDKLDKLKTSKSCEGTFESLRTESTLVRIEKVLQRQSSLKMGAKLVQYLLDHGLMLLKFSSKEKSGIEKAQDASNNRWRKYKRSASFDSRKIVVLFSVLSSLGTLILIYLTLRVRQQGGDGSVAISSYLYINVLPLHGSRRN

Homology

[Close]

BLAST of CmaCh16G007110 vs. TAIR 10
Match: AT4G39900.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-31
Identity = 91/242 (37.60%), Postives = 139/242 (57.44%), Query Frame = 0


Query: 20  KLAKVTRLDERERHCSLEILPILFEKTSFPFQNSLARDSS--------SFLSTEGFDNSP 79
           KL K T   +  +H ++++ P+L ++ +FP +     D+S        S L  EG +  P
Sbjct: 28  KLPKST-FGDTGKHSAIDVFPLLVKEAAFPLKEDRDIDTSLVQDVCTISVLPDEG-NTIP 87

Query: 80  ECDPHLAFLSFLEVTHPTKTRMSLETSDTRLTC---QNVIDIHVNAGDACSSCIVNIDID 139
           +C  H   LSF++   P+K +M +   D +L C   QN I++ +   D+  SC+V+I+++
Sbjct: 88  QCTSHFTLLSFVKALLPSKNQMLI---DAQLNCQKTQNRINVLLGGTDSYQSCVVDINVE 147

Query: 140 KDKLDKLKTSKSCEGTFESLRTESTLVRIEKVLQRQSSLKMGAKLVQYLLDHGLMLLKFS 199
           K    +  TS   +    S+++ES  V ++KVLQRQ+SL                     
Sbjct: 148 KGNGGETVTSH--DEVVASMKSES--VHMQKVLQRQASL--------------------- 207

Query: 200 SKEKSGIEKAQDASNNRWRKYKRSASFDSRKIVVLFSVLSSLGTLILIYLTLRVRQQGGD 251
           S +K+  E+  DA  NRWR+YKR+ASFDSRKIV+LFS+LSS+GTLILIYLTLRV+Q G +
Sbjct: 208 STDKALSERCHDAPTNRWRRYKRAASFDSRKIVILFSILSSVGTLILIYLTLRVKQNGDN 239

The following BLAST results are available for this feature:

BLAST of CmaCh16G007110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G007110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39900.1	5.1e-31	37.60	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34064:SF5	PROTEIN, PUTATIVE-RELATED	coord: 1..250
None	No IPR available	PANTHER	PTHR34064	OS04G0672300 PROTEIN	coord: 1..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G007110.1	CmaCh16G007110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane