CmaCh16G006980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	polyadenylate-binding protein 2-like
Location	Cma_Chr16: 3641636 .. 3644786 (-)
RNA-Seq Expression	CmaCh16G006980
Synteny	CmaCh16G006980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGTTTCCATTCGTTCTCTCTTTCTGTTTCTCCTGCTTAGGAAAAAAAAAACGGAAGAAATAATTGTTGTGATTTTTGTTTCTTTGTTCTTTGTGATCGTGTATGCGTTTCAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGGTCGTTTTCTTATGATTACGTGTTATTGTTTTCGTTTATTAAGCCTTTAGTAATGGAATTTCTGAATTTAATTGGTTTCGTTGCTGTGATATTGTAAGCGATATGGAAGAAACCATGATTTTGGATGATATGGGTGAACAAATTATGATTGTGATTTTAGTGATATTTACCTGTCATAGTTTCGCTGATTTGGATGAACAAATTATGATTGTGATTTAAGTGATATTTACCTGTCATTGTTTCGCTGATTTGGATGAACAAATTATGATTGTGGTTTTTGACAGAAACCAAAATTTAGTTATCCGATCATGTTGGTTGGAAGTTTATTATTTATATCTATGATTGTTATGCTTGATGCAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTGAGAAGAAAAATGTCCCTACCGATGTTCTTTAGATTCGAGAAGCTTTTTAGTTGTTTGATCTTTGAAAAAATGTTGTTGAAATGAGAAATTTCTGCAAAAAATTCAAAAAGAAGGAAAGAAAGAAAGAAGAAATTTGTGAATGATGGTTGAAAGACTGGTTTAATGGGAAAAATCAGTGAGAAAAAGAAAGAAGGAAAAAAAAAATCTGAAATATCAAAAAACCATTAGTGAATTGTAGCATTTAGGGAAAGGGACTATTTCTAGTTGAACTTATGCTGTTGAAAGGCATGTGCTCTGGAGGCTGGAACTGTTAGATGTGGAATAACGATGTCGATGGTTCAGCTACAGTATGCTAGGGGTGTCTCCGAGGAAGCAGAGGCATTGTCATTTGTGTCTCACAAATGAGCCATTAAGGACAAGGCGAGGGTGTAAGATCATCGCTTTTTTGTGGCATTATTTTTCAAGTTTGTGCTTCGTTTGACCCAGTTAGACCAAGTATAGGATTTTAATGCATGCATTTCCCCTTAGCCAGTTACCTCTGAAAGAACTAAGAAGATATTAACTTATTAATCTAAGACTTTTCCTTTTAGTTAGAAACTCAACGTGTCATCTTCGTGCAGAGAGTCCATGCTTATTTCATTGTTAGATTGCAAAACTATGTGGACTTATAAGATTAATGTGGGAAATCTTCTACGTTGAAGAATAAACACCTCATTCTCAATCATTTCTAATATAGAACTGTTTTGAACTTCTTGTAATGGATTTCTTAAGCATGCATCTGTTATGTGATTCTCATGCCTCTAATTGAATGATACTTCAGTGTTACATATGTTCATTTAAACATATGATTTGGATCTTTGTGGCAACTCGGTGATTTGGTTAGAGTTATTTTTCTTGGCATAGTTTATGATTCTCTTCCCAGCCCATTGGAAGTTTGTTACTTCTTAATGTTGCTCTGGTGTATCTTATCCCAATACTTTGTTGATTGTGTGTGATAAAGTGTTCTTCTCTCTTCTTCCCTTTTTTTTTTCTTTTATTTGTACAAAGCTTCTTGATTTATAACTTTCTTAATCATAAAAACATACAAACTTAATTCTTGCTGTCTGATCTTTTCTCAAAGGAATTGCTAATATATTTATGTAAAGAACAGAGAACTCATAGAACTTTCTATTCATTGTTGATGGCACTTTACCATTTTATGTTTAAAGCTCTGTTTCAAGAATCGAAATCCTTGTGTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTGAGTCTTTCATTTTTCTCGGTCTTCGCCAAAAAAAAGAAAAAAAAAAAGTTTCTGGCTCATTGGTTTGGTATGAATGTAGAGATATCATGCCTTTATTATTTGCTGCCATGATCCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGTACAGTTTCGAGTGTCTTAATCCTGCATCACCATGAAATTCTTGATTTATCTAATTTCTTGATCCTTCAATATCCCATTGCAGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGGTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTGTCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTATGACACTCCCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCTTTTAGACGACGTATGAGAATGATTCTTGTAAATACTTATAGGAAAAAAGTTAAGCCCATTGTCAGAACTGAGCTGCATATGATGCTTGTCTGTGCGGAAGAACTTGGAATTGAACCATGCTTAATGTAACATGGGTAAGATTTATATTTCCCACAAGTTTTTTTGTTTTCAATTATATCGGCAAATGTGGGGCAGTTTGCATGCACAGGAAAACTTGTAAGGGCTGGGGTGTACATGGTCTGGGTTGAATTGAGCTGGGGTGTACATGGTCTGGGTTGAATTGAGTTGGG

mRNA sequence

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAGATGCTAACATTGTTCAGGTTTGATAAGTTTGTCCTGAACGAGTTGTTGGTACTTGCTTCTGATCCTTGAGAGAACACAGAAATGATGTATGTCTATATTTACAATCTGTTATTGCCTAAACTGTCTTGGAAATTCACAATAATCAATTACTTTGCCGTTTCAATAAGCTTTTGCTCTATGACACTCCCAGAATCCATTGCCCAGCTTTAAGTCGATAGAGCTTTTAGACGACGTATGAGAATGATTCTTGTAAATACTTATAGGAAAAAAGTTAAGCCCATTGTCAGAACTGAGCTGCATATGATGCTTGTCTGTGCGGAAGAACTTGGAATTGAACCATGCTTAATGTAACATGGGTAAGATTTATATTTCCCACAAGTTTTTTTGTTTTCAATTATATCGGCAAATGTGGGGCAGTTTGCATGCACAGGAAAACTTGTAAGGGCTGGGGTGTACATGGTCTGGGTTGAATTGAGCTGGGGTGTACATGGTCTGGGTTGAATTGAGTTGGG

Coding sequence (CDS)

TTCGATTCTGTGCAGGCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGCGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGGGGAGATGGACGGAGACGTTGACATGTCAGTCGCCGACGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGGTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTCGGCAATGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACCATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGATGCTGTTCAAGAGGCCCTCCTTCTGAATGAATCAGAGCTTCATGGACGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGCATGAAGCAATATCGTCCCCGTCGTTATAACCCATACGTGGGTTTTAGGAGACCTTATGCACCACCGTATTTTTATTCACCTTACGGCTATGGGAAGATGCCTCGGTTTCGAAGATCGATGAGGTACATGCCCTACTATTAG

Protein sequence

FDSVQAVLRIEEISRNEGGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY

Homology

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BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 7.6e-92
Identity = 179/220 (81.36%), Postives = 194/220 (88.18%), Query Frame = 0


Query: 26  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           R+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.4e-90
Identity = 173/216 (80.09%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 26  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 85
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 86  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 145
           AKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 146 LTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 205
           L DKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 206 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.9e-69
Identity = 148/227 (65.20%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 27  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 86
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 87  EEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHF 146
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 147 QSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPG 206
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 207 MKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           M+Q+  R R + P  GF  P  P  FY PY YG++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 87/152 (57.24%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 52  VADDDAV----KELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEE 111
           ++D DA+    KEL EMK+R+ EME EAA LR MQ +++ E  A+++          KE 
Sbjct: 1   MSDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKES 60

Query: 112 TDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEADAVQE 171
            D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  
Sbjct: 61  IDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPN 120

Query: 172 ALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 199
           ALLLN S LH R LKV PKRTNVPGM + R R
Sbjct: 121 ALLLNGSMLHERPLKVTPKRTNVPGMSRGRGR 143

[Close]

BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-31
Identity = 101/234 (43.16%), Postives = 133/234 (56.84%), Query Frame = 0


Query: 18  GGIASEREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAA 77
           GG     E+E+EE E    E P  GE+ G  D ++ D     EL+ +K R++EMEEEA  
Sbjct: 78  GGAGGLEELEDEELE---EEEP--GELTG--DQTIED----PELEAIKARVREMEEEAEK 137

Query: 78  LREMQAKVEKEMGAVQDPAGTS---TSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSC 137
           L+E+Q +VEK+M     P        S   K E D+RS++VGNVDY  T EE++ HF  C
Sbjct: 138 LKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGC 197

Query: 138 GTVNRVTILTDKF-GQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMK 197
           G+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+ 
Sbjct: 198 GSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS 257

Query: 198 ---------QYRPR--RYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
                    +YR R   Y+    F   Y P     P G     R R +  Y PY
Sbjct: 258 TTDRGFPRARYRARASSYSSRSRFYSGYTP----RPRGRVYRGRARATSWYTPY 296

[Close]

BLAST of CmaCh16G006980 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 338.2 bits (866), Expect = 5.4e-93
Identity = 179/220 (81.36%), Postives = 194/220 (88.18%), Query Frame = 0


Query: 26  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAAL 85
           MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 86  REMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVN 145
           REMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNVDYACTPEEVQQHFQ+CGTV+
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVH 120

Query: 146 RVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPR 205
           RVTILTDKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R R
Sbjct: 121 RVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGR 180

Query: 206 RYNPYVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           R+NPY+G  FRRP+  PY YSPYGYGK PRFRR MRYMPY
Sbjct: 181 RFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CmaCh16G006980 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 332.0 bits (850), Expect = 3.8e-91
Identity = 173/216 (80.09%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 26  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 85
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 86  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 145
           AKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 146 LTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 205
           L DKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 206 YVG--FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
            +G  FRRP+ PPYFYSPYGYGK PRFRR MRYMPY
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216

[Close]

BLAST of CmaCh16G006980 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 307.4 bits (786), Expect = 1.0e-83
Identity = 161/202 (79.70%), Postives = 175/202 (86.63%), Query Frame = 0


Query: 26  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQ 85
           MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 86  AKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTI 145
           AKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120

Query: 146 LTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNP 205
           L DKFGQPKGFAYVEF+E +AVQEAL LNESELHGRQLKV PKRTNVPGMKQY P R+NP
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNP 180

Query: 206 YVG--FRRPYAPPYFYSPYGYG 223
            +G  FRRP+ PPYFYSPYGYG
Sbjct: 181 SMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of CmaCh16G006980 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 261.9 bits (668), Expect = 4.9e-70
Identity = 148/227 (65.20%), Postives = 175/227 (77.09%), Query Frame = 0


Query: 27  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 86
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 87  EEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHF 146
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGNVDYACTPEEVQQHF
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHF 124

Query: 147 QSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPG 206
           QSCGTVNRVTILTDKFGQPKGFAYVEF+E +AVQ +L+LNESELHGRQ+KV  KRTNVPG
Sbjct: 125 QSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPG 184

Query: 207 MKQY--RPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 237
           M+Q+  R R + P  GF  P  P  FY PY YG++PRFRR MRY PY
Sbjct: 185 MRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CmaCh16G006980 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-63
Identity = 145/264 (54.92%), Postives = 173/264 (65.53%), Query Frame = 0


Query: 27  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEM 86
           +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 87  EEEAAALREMQAKVEKEMGAVQ-------------------------------------D 146
           EEEA ALREMQAK EK+MGA Q                                     +
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 147 PAGTSTSQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 206
              +  S A KEE DSRS++VGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFA 184

Query: 207 YVEFLEADAVQEALLLNESELHGRQLKVLPKRTNVPGMKQY--RPRRYNPYVGFRRPYAP 237
           YVEF+E +AVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P
Sbjct: 185 YVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP 244

The following BLAST results are available for this feature:

BLAST of CmaCh16G006980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	7.6e-92	81.36	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	5.4e-90	80.09	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	6.9e-69	65.20	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	3.2e-34	57.24	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	2.6e-31	43.16	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of CmaCh16G006980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	5.4e-93	81.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	3.8e-91	80.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	1.0e-83	79.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	4.9e-70	65.20	polyadenylate-binding protein 1	[more]
AT5G51120.2	2.0e-63	54.92	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..108
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 26..235
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 26..235
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 112..183 e-value: 2.05063E-48 score: 152.06
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 112..183 e-value: 1.1E-20 score: 84.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 113..181 e-value: 4.4E-16 score: 58.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 111..187 score: 16.602465
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 49..183 e-value: 2.3E-28 score: 100.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 101..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006980.1	CmaCh16G006980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding