CmaCh16G006860 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionVQ domain-containing protein
LocationCma_Chr16: 3569710 .. 3570954 (-)
RNA-Seq ExpressionCmaCh16G006860
SyntenyCmaCh16G006860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTGGAAATAGTGGGAGTATGCAGTCGTCTAGTGGCGGCGATGAGGAGTTTGAGTCACCCGCCGACTCAATCACCGCCGTCTTTTTAACTAATCCACCAACTCATGGTGGTTCTTTCACCGGAAACTTCCATCCAACCAACCCTCTTCCTCAATCCTCCTCCTCCTCCTCCGCCGCCGCGGCCATGTTTGATCCTTTGTCTAATTTATTTGATCCAAGATCTTCGCTTTCTAACCAAAACCCACTTCTCAATTTCGATATGGTTTGGTCTCGGTCTCTGAGATCCGATCAAATTCCGCCGGATCTCGACGCCGCAAATCTTAATTCCGCCGCCGCCGATCAGAGTTTATCATCTATCTCCAATTTCTCCGGCGTACACAATTTTTCTCACCCATCTGATGGTATTAATTCCTTCCGAGCTTCGGATCAGACAGAATTGCAAGATATTCCTAATAATTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGAACGTAGTTAGGAGCTCGAAGAAGCGGCCGAGGGCGTCACGACGAGCTCCGACAACGGTGTTAACAACAGACACTACTAATTTCCGTGCCATGGTTCAAGAATTCACTGGAATTCCAGCTCCACCCTTCACCGCTTCCTCGTCGTCTCCTTTTACAAGAAACGCTGCGAGATTCGATTTGTTCGGCGGCTGTGGCGATGGCGGAGGCGGAGGTGGTGGTGGTAGATCATCAACAAATTTGGACGTTGTACCATCTACACAACAGAATTACCTTTTGCGACCATTTCCTCAAAAACCGCCGTATCTCTCTCCGCCGTCATCGACTTTCCTCGCCGGCGGCAACTTACAAAGTCCAATTTTTGACATCCAAAACATGTTTCAATCCAACCCCAAATTGATCCCTTCATCCAACGATCAAAATCTCAAAATGGGTATTTTCGAGGAGTTCGGTTTAAGCAGCCACAGCCACGGCCTCCTCCCGACCGGCCAAACCGTAAGAGGCGACAACAACAACCACCCTCCACCGACGAGCTGGGTTATCGGCGGCAGCGGTGGAGACCCAAATCAACAAGGTGTTAATCTCAGATCTAGCAATGGAAATCTCAACGGGAAATTAATCAGGTACGCCGCCGCCGGCACTGCAAATTCACCGGGATTTCACGGCGATAAAGCTGCTGAGAATTTAAGAGCTAGAACTGAAGGTATGGTGGAACCATGGATATGTTCATCTGATTAG

mRNA sequence

ATGGAGTCTGGAAATAGTGGGAGTATGCAGTCGTCTAGTGGCGGCGATGAGGAGTTTGAGTCACCCGCCGACTCAATCACCGCCGTCTTTTTAACTAATCCACCAACTCATGGTGGTTCTTTCACCGGAAACTTCCATCCAACCAACCCTCTTCCTCAATCCTCCTCCTCCTCCTCCGCCGCCGCGGCCATGTTTGATCCTTTGTCTAATTTATTTGATCCAAGATCTTCGCTTTCTAACCAAAACCCACTTCTCAATTTCGATATGGTTTGGTCTCGGTCTCTGAGATCCGATCAAATTCCGCCGGATCTCGACGCCGCAAATCTTAATTCCGCCGCCGCCGATCAGAGTTTATCATCTATCTCCAATTTCTCCGGCGTACACAATTTTTCTCACCCATCTGATGGTATTAATTCCTTCCGAGCTTCGGATCAGACAGAATTGCAAGATATTCCTAATAATTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGAACGTAGTTAGGAGCTCGAAGAAGCGGCCGAGGGCGTCACGACGAGCTCCGACAACGGTGTTAACAACAGACACTACTAATTTCCGTGCCATGGTTCAAGAATTCACTGGAATTCCAGCTCCACCCTTCACCGCTTCCTCGTCGTCTCCTTTTACAAGAAACGCTGCGAGATTCGATTTGTTCGGCGGCTGTGGCGATGGCGGAGGCGGAGGTGGTGGTGGTAGATCATCAACAAATTTGGACGTTGTACCATCTACACAACAGAATTACCTTTTGCGACCATTTCCTCAAAAACCGCCGTATCTCTCTCCGCCGTCATCGACTTTCCTCGCCGGCGGCAACTTACAAAGTCCAATTTTTGACATCCAAAACATGTTTCAATCCAACCCCAAATTGATCCCTTCATCCAACGATCAAAATCTCAAAATGGGTATTTTCGAGGAGTTCGGTTTAAGCAGCCACAGCCACGGCCTCCTCCCGACCGGCCAAACCGTAAGAGGCGACAACAACAACCACCCTCCACCGACGAGCTGGGTTATCGGCGGCAGCGGTGGAGACCCAAATCAACAAGGTGTTAATCTCAGATCTAGCAATGGAAATCTCAACGGGAAATTAATCAGGTACGCCGCCGCCGGCACTGCAAATTCACCGGGATTTCACGGCGATAAAGCTGCTGAGAATTTAAGAGCTAGAACTGAAGGTATGGTGGAACCATGGATATGTTCATCTGATTAG

Coding sequence (CDS)

ATGGAGTCTGGAAATAGTGGGAGTATGCAGTCGTCTAGTGGCGGCGATGAGGAGTTTGAGTCACCCGCCGACTCAATCACCGCCGTCTTTTTAACTAATCCACCAACTCATGGTGGTTCTTTCACCGGAAACTTCCATCCAACCAACCCTCTTCCTCAATCCTCCTCCTCCTCCTCCGCCGCCGCGGCCATGTTTGATCCTTTGTCTAATTTATTTGATCCAAGATCTTCGCTTTCTAACCAAAACCCACTTCTCAATTTCGATATGGTTTGGTCTCGGTCTCTGAGATCCGATCAAATTCCGCCGGATCTCGACGCCGCAAATCTTAATTCCGCCGCCGCCGATCAGAGTTTATCATCTATCTCCAATTTCTCCGGCGTACACAATTTTTCTCACCCATCTGATGGTATTAATTCCTTCCGAGCTTCGGATCAGACAGAATTGCAAGATATTCCTAATAATTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGAACGTAGTTAGGAGCTCGAAGAAGCGGCCGAGGGCGTCACGACGAGCTCCGACAACGGTGTTAACAACAGACACTACTAATTTCCGTGCCATGGTTCAAGAATTCACTGGAATTCCAGCTCCACCCTTCACCGCTTCCTCGTCGTCTCCTTTTACAAGAAACGCTGCGAGATTCGATTTGTTCGGCGGCTGTGGCGATGGCGGAGGCGGAGGTGGTGGTGGTAGATCATCAACAAATTTGGACGTTGTACCATCTACACAACAGAATTACCTTTTGCGACCATTTCCTCAAAAACCGCCGTATCTCTCTCCGCCGTCATCGACTTTCCTCGCCGGCGGCAACTTACAAAGTCCAATTTTTGACATCCAAAACATGTTTCAATCCAACCCCAAATTGATCCCTTCATCCAACGATCAAAATCTCAAAATGGGTATTTTCGAGGAGTTCGGTTTAAGCAGCCACAGCCACGGCCTCCTCCCGACCGGCCAAACCGTAAGAGGCGACAACAACAACCACCCTCCACCGACGAGCTGGGTTATCGGCGGCAGCGGTGGAGACCCAAATCAACAAGGTGTTAATCTCAGATCTAGCAATGGAAATCTCAACGGGAAATTAATCAGGTACGCCGCCGCCGGCACTGCAAATTCACCGGGATTTCACGGCGATAAAGCTGCTGAGAATTTAAGAGCTAGAACTGAAGGTATGGTGGAACCATGGATATGTTCATCTGATTAG

Protein sequence

MESGNSGSMQSSSGGDEEFESPADSITAVFLTNPPTHGGSFTGNFHPTNPLPQSSSSSSAAAAMFDPLSNLFDPRSSLSNQNPLLNFDMVWSRSLRSDQIPPDLDAANLNSAAADQSLSSISNFSGVHNFSHPSDGINSFRASDQTELQDIPNNCGRGGGGGGGGGGGGANVVRSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTASSSSPFTRNAARFDLFGGCGDGGGGGGGGRSSTNLDVVPSTQQNYLLRPFPQKPPYLSPPSSTFLAGGNLQSPIFDIQNMFQSNPKLIPSSNDQNLKMGIFEEFGLSSHSHGLLPTGQTVRGDNNNHPPPTSWVIGGSGGDPNQQGVNLRSSNGNLNGKLIRYAAAGTANSPGFHGDKAAENLRARTEGMVEPWICSSD
Homology
BLAST of CmaCh16G006860 vs. ExPASy Swiss-Prot
Match: Q9LIE6 (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.5e-06
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 172 VVRSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPA 211
           V + +++R RASRR PTT+L TDT+NFRAMVQ++TG P+
Sbjct: 50  VTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS 88

BLAST of CmaCh16G006860 vs. TAIR 10
Match: AT5G65170.1 (VQ motif-containing protein )

HSP 1 Score: 100.9 bits (250), Expect = 2.5e-21
Identity = 147/439 (33.49%), Postives = 193/439 (43.96%), Query Frame = 0

Query: 1   MESGNSGSMQSSSGG-----DEEFESPAD-SITAVFLTNPPTHGGSFTGNFHPTNPLPQS 60
           MESGNS SMQSSSGG      EE++S AD SI+A+F             N +  N  P +
Sbjct: 1   MESGNSSSMQSSSGGGGGGDQEEYDSRADQSISALF-------------NHNNNNNNPTT 60

Query: 61  SSSSSAAAAMFDPL-SNLFDPRSSLSNQNPLLNFDMVWSRSLR-----SDQIPPDLDAAN 120
            S + A     D L +N F+  +S S  NPL      WS +       S  +PP + +  
Sbjct: 61  VSPNIAVPTQLDALIANYFN--TSWSADNPL------WSTTATQPTDGSRPVPPPISSEQ 120

Query: 121 L-NSAAADQSLSSISNFSGVHNF-SHPSDGINSFRASDQTELQDIPNNCGRGGGGGGGGG 180
           +  +    Q+L ++ N +      S P+D  N                            
Sbjct: 121 VFFTNPLQQNLRTVPNTNTTSPICSVPTDKKN---------------------------- 180

Query: 181 GGGANVVRSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTASSSSPFTRNAA 240
             G    R+ KKR R SRRAPTTVLTTDT+NFRAMVQEFTG P+ PFT  SSS F R  +
Sbjct: 181 --GLATTRNPKKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSS-FPR--S 240

Query: 241 RFDLFGGCGDGGGGGGGGRSSTNLDVVPSTQQNYLLRPFPQKPPYLSPPSSTFLAGGNLQ 300
           RFDLF          G   SS++  + P   +  L+ P      YL PPSS +      Q
Sbjct: 241 RFDLF----------GSSSSSSSRPMKPFPHK--LISPSTLNHHYL-PPSSEYHHHHQHQ 300

Query: 301 SPIFDIQNMFQSNPKLIPSSNDQNLKMGIFEEFGLSSHSHGLLPTGQTVRGDNN------ 360
           + + ++     SNP L  S  DQ     +      +S+  G +  G    G +N      
Sbjct: 301 NLLLNMNTPNISNPFLNNSLTDQPKPSSL-----RTSNGFGHVDVGTNFEGLHNIIVSSS 360

Query: 361 -NHPPPTSWVIGGSGGDPNQQGVN--LRSSNGNLNGKLIRYAAAGTANSPGFHGDKAAEN 415
            +   PT   I G       +  N  LRS NGN    + R   +     PG  G +   N
Sbjct: 361 SSMTQPTLNTIHGPEKSTEAENDNNMLRSINGNDQPMVQR---SDGYTQPGASGSE--NN 362

BLAST of CmaCh16G006860 vs. TAIR 10
Match: AT4G39720.1 (VQ motif-containing protein )

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-18
Identity = 116/373 (31.10%), Postives = 148/373 (39.68%), Query Frame = 0

Query: 1   MESGNSGSMQSSS----GGDEEFES-PADSITAVFLTNPPTHGGSFTGNFHPTNPLPQSS 60
           MESGNS SMQSSS    GG+EE++S  AD   + F  +   H  S         P PQ  
Sbjct: 1   MESGNSSSMQSSSGGGGGGEEEYDSRAADQSISAFFDHHNNHVSSI--------PTPQ-- 60

Query: 61  SSSSAAAAMFDPLSNLFDPRSSLSNQNPLLNFDMVWSRSLRSDQIPPDLDAANLNSAAAD 120
                                   N   LL+FD   + SL    IPP+    N       
Sbjct: 61  -----------------------QNHRNLLHFDHNNNNSL----IPPNYFNNN------- 120

Query: 121 QSLSSISNFSGVHNFSHPSDGINSFRASDQTELQDIPNNCGRGGGGGGGGGGGGANVVRS 180
                   F  V+    P   ++  R S  T      NN G               V++ 
Sbjct: 121 -------TFLPVNQQPDPISQLD-LRTSSATSSLPPTNNIG---------------VIKK 180

Query: 181 SKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTASSSSPFTRNAARFDLFGGCG 240
           +KKR RASRRAPTTVLTTDT+NFRAMVQEFTGIPAPP   ++S     N  R + F G  
Sbjct: 181 TKKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNS---IVNTTRLNTFLGLS 240

Query: 241 DGGGGGGGGRSSTNLDVVPSTQQNYLLRPFPQKPPYLSPPSSTFLAGGNLQSPIFDIQNM 300
                     SS N         N LLRPF QK      P++  L+G  +Q         
Sbjct: 241 S---------SSPN----TYNTNNLLLRPFAQK----LTPATPLLSGSQIQQYQNPNNGF 286

Query: 301 FQSNPKLIPSSNDQNLKMGIFEEFGLSSHSHGLLPTGQTVRGDNNNHPPPTSWVIGGSGG 360
              N + +  ++  N +    ++FGL            T    N N     +   GGS  
Sbjct: 301 EDMNLQALLQAHISNPRSNEHDQFGLGMMQTPSTNPPTTTAAANGNINTGDNGSYGGSDH 286

Query: 361 DPNQQGVNLRSSN 369
           + N  G  L SS+
Sbjct: 361 EHNNDGTWLSSSS 286

BLAST of CmaCh16G006860 vs. TAIR 10
Match: AT1G35830.1 (VQ motif-containing protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-14
Identity = 78/253 (30.83%), Postives = 112/253 (44.27%), Query Frame = 0

Query: 174 RSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTASSSSPFTRNAARFDLFGG 233
           R+ +KR RASRRAPTTVLTTDT+NFRAMVQEFTG+PA PF    S PF+    RFD+F  
Sbjct: 97  RNPRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPF----SHPFSSTTRRFDIFRS 156

Query: 234 CGDGGGGGGGGRSSTNLDVVPSTQQNYLLRPFPQKPPYLSPPSSTFLAGGNLQSPIFDIQ 293
             D                 P T   +  RP PQKP  L+P +S+ L          ++ 
Sbjct: 157 PSD-----------------PLTYNPF--RPIPQKP--LNPSTSSLL----------NLH 216

Query: 294 NMFQSNPKLIPSSNDQNLKMGIFEEFGLSSHSHGLLPTGQTVRG---------DNNNHPP 353
           +   ++         Q  ++  F+   L SH H   PT  ++             N+HP 
Sbjct: 217 HHTTTSMTFPDLPLPQTHQVSTFQ--SLLSHQHHHQPTLSSLHDLDSMNLGALQQNHHP- 276

Query: 354 PTSWVIGGSGGDPNQQGVNLRSSNGNLNGKL---IRYAAAGTANSPGFHGDKAAENLRAR 413
                   +  D N Q +  + S  +   +    I    + ++++P     K +      
Sbjct: 277 --------TADDDNHQLMMRQFSEFDRRTEKPPEIHNNISSSSSAP----IKGSSGTTTT 299

Query: 414 TEGMVEPWICSSD 415
           T   V+PWIC +D
Sbjct: 337 TTTTVDPWICPTD 299

BLAST of CmaCh16G006860 vs. TAIR 10
Match: AT4G15120.1 (VQ motif-containing protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-07
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 172 VVRSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIP-APPFTASSSSPFT 223
           V + +++R RASRR PTT+  TDT NFRAMVQ+FTG P A  F +S SS F+
Sbjct: 46  VAKPTRRRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFS 97

BLAST of CmaCh16G006860 vs. TAIR 10
Match: AT3G22160.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-07
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 172 VVRSSKKRPRASRRAPTTVLTTDTTNFRAMVQEFTGIPA 211
           V + +++R RASRR PTT+L TDT+NFRAMVQ++TG P+
Sbjct: 50  VTKPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPS 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LIE66.5e-0661.54VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G65170.12.5e-2133.49VQ motif-containing protein [more]
AT4G39720.11.2e-1831.10VQ motif-containing protein [more]
AT1G35830.12.3e-1430.83VQ motif-containing protein [more]
AT4G15120.11.2e-0757.69VQ motif-containing protein [more]
AT3G22160.14.6e-0761.54VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 185..212
e-value: 2.5E-12
score: 46.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..188
NoneNo IPR availablePANTHERPTHR33179:SF4VQ MOTIF-CONTAINING PROTEINcoord: 1..412
IPR039609VQ motif-containing protein 15/22PANTHERPTHR33179VQ MOTIF-CONTAINING PROTEINcoord: 1..412

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006860.1CmaCh16G006860.1mRNA