CmaCh16G006760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	apoptotic chromatin condensation inducer in the nucleus
Location	Cma_Chr16: 3524678 .. 3528902 (-)
RNA-Seq Expression	CmaCh16G006760
Synteny	CmaCh16G006760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGAAATCGAAATATCAAGTTCTTGACAATCGACCCATTGATCAGTGGAGGGTTACGGAGTTGAAAGAGGAGCTTAAGAGACGAAAATTAACCATCAGAGGCCTGAAGGAAGATTTGGTAAAACGGTTGGATGAAGCGCTTCGAAATGAAAGGGAAGAAAATGCGGAGGAAACCGATGGTGTTGATGGTGACCCTCCAGTTACAAATAGTGACAATAACCAAGTGCATGCATCTTCGGCAAAAGACTCAAATGAAGATGCTAAAAAGATTCTGAATGTAGAAGATGTTGAAGTTCAGGTTGACAGGAATGACAGTACTGCAGCTGGGGACGATGGGGCTAGTCTCAATGGTTGTCCTAGGGTAGAAGAGGGGTCGGCTATCCATGTCACTTCTGTGGAAACTAAAATTACGGTAACTGAAAATGTGGCTTCTGAAGTAGCGTTAGGTGTGGAAGGTTTGCAGAATATGGAAAGCAAGGATAACGAAAATTCGAAGGTCGAGTTGGAGATTGAGAAATCGAAGCCCCAGGTGGATAGTGAGGATTCAAAGTCCCAGCTGGATGATGTGAAAACGGAGCTCGAGGTGGAGAATGAGAATTTGAAGTCTCAGCAGGCAGATATCGTGCACGACTTGTCTGCTTCAGACAGCCAGGTATCTGAGGTCAGCCCTGTTTTAGGGTCTCAAGTAAGAACTGATTCTATTTCTACTGATTCTGTGACAATTAATCAAATGATTGAACTAAAGGAAAATATATCTGCTGATCATGTAAAATTAGAACTAGATGTTAAGCAGGAGATGGTGGAACCATCATCCAGCATTATTGTCCCAGATGCTGGCGAATCACATCCAATGGATGTTGAAGAGCCATCTGTGAACAAGAATGTTGAAGAGTCACTTGCAAACAGAGATGTTGTGGAGTCACCTGAGAACAAAGATGTTATAGAGCCTATTGTGAATGAAGATGTTGAGGAGAAATATGATGTTAAGGACATGATTTCTGAGGTTCATGAGAAGCATGATGACACGGGGTTTTCTGAAAAGCTAAATTTAGATAGAAGTTCTGGGGACGATTCAATAGAAGATGCCATAGAGACTAAGACTGTTTTGGGGAATAATCCTAAAGAAATGGGAGAGAAGAATGTAAAGAGTGAGGGCCTTATATGCAAAGAGGAAAAGGTTGGAGACATAGCAGTGCGAGGTTCAACTGCAGATAAAAAGTATCTTGATACAGAGAATGAGGTTTCATCTTTGCCTGCTGAAAAAAGAAAGCTTCATGGTAATGATATATTTCCTGACCTTCTCCCCTTACCCCAAGCCTGATCCATTGCACCAAACTGAAGGGAAATATATACAAATTGTGTTATTTTCTCAGCATAAATTAATACTTATGCTTATAACTTCACTGATTTTGTGAATTTCAAATTTTCATTTTAGTTTTTCTGTCGTACATAAAATTTTCATCATGAAGATCAGTTTATGTTTTAGGAATTTTGAATGAAGGCTTTGCATGTTATATAATATTTTCATCTTATTTATATGCCAATACAATGGATGTCACTTTAGTTGGGGATAATGAACTATTATTATCATAGCTACTCTTTTTATTTTTCCGAATGATGTTATAACAATTAGTTGAATTGGTTTCTTCGTTTTTGTTAGCTATATGCAATATTGTAATTATTTTCATTTTCTGGTGTATATATATGCAGTTTTAGAGTACACTCAGCCACTGTCATAAAAAGAACTATAAGGAGAGTGCATCTCTATCTGTCTCTTTGAGTTTATGGAAACTAATTATTGGTTCTAGAAGTAATTGCAGTTAAAAACATCGCTAGCTTTCTTTCAATGGATTTTTTTAGTTTTCGGAAGTTTAGTTGATATTTAGTTTGCTGCTGTCTTTGCATTGGCTTTTCTGAAAGAAGTTGGTAGCTAAATGATGTTCGATGATGAAGAGAAATTCGTTGTTCATCGGGAGTATCTTAGATGTTAATTGTTTTTTTGGCATAGTCATTACTGTGTTATGTTGGTGAGTTTTCTGCAATATAGTTATTCTGGTTTTGAATATAAGTTGATGTTGGAAAAAAATTGTGTAAAGCTCTAAAGTTAAACCCCTATATTTTACCATGTTCGCTCGATGTTTTTCATTTTCCTTTTTCTTCTTGATTTGTTTGTACCTCTTTCATTCATGAAGGATTTCTTCTCGTTAGACATAAGATGACCTTCAAATATAATGGATGGCTCATGATTCTGTGAAATTTTGTTTTCAGTTGAACTAATATTTTCTCCAGCTACGGTAATTGAAAATTTTCTGGGATTTACTTTTGTTTCCAGGTAAATGGACAGGTTTCTGTCTCCATACCATATCTGTTTCTACCGATATCTCTTTCTTCATACCGTTTTCTGGCCATACCATGAGGCATCAGTCAAGATGTTTTTTCGTGATGGATTGTCCCCATTTCAGTGGAATCCTGCTCTTTTTCACTCCATGTTAAAATCTACTAAAATGTTAAATTTTAGTCGCTCTTCTGCAAATTCCAAGTTTTGTCCTGAATGAGAATCTGTTTCTCTGTTTATAGAACTTGATGTGCTGTTTGATTGGTAGACGTGAAAGTCTTATTGATTTTGATTCGGTTGAATAACATTATTCTGCATTGGATTTTCTTCACATTTAGATCAATTGTCTTGGTTTTGTTTTGTCTGATGAGATTATTTGGCAGATCAAGCAGTGGTTGGAAATGAATCTGTAAAGAGACAGTGTAGGTGGAATGCTGAAAACCTCAAAATTCCAGAGCCTCAAAACACTGCTCATACATCTACTAGTAATTCAAAGGACATTCATCAGTCCATTACTCCGAAACGCAACTTCTCCAGATCTGACTCCACAGCTAGTGAAGATCCATCGAAGGAACGTGTTGGTGAGTTAAATTTGACAAGTTGACTATATTGCGAATTCTGGGCCACATCTGACTCACTTTCCTCTCTTTTGCCTTGTATAGTTCCACCATCACCAAAACCTCCCACAAATTCACTAAAAATCGACCGTTTTCTGCGTCCATTTACCCTCAAAGCTGTGCAGGAGCTTCTGGGTAAGACTGGTAGTGTCTCCAGCTTCTGGATGGATCACATCAAGACGCATTGCTATGTAACTGTAAGACTCTTCGATCCTAGTTGCCGGAATCTAATTTGTTCCCTGCTTATAGGAGGTTCATAGTTTTGGAATTTGATTCCTATGGACATTACATACTAATTGTTGCTTGGAAACTACTGTCAATGATCCCAGTACTCATCGGTGGAAGAAGCCATGAAGACTAGAGATGCTGTTTACAACTTGCAATGGCCACCAAATGGTGGGCGTCTTCTTATAGCTGAGTTTGTTGATCCTCAAGAAGTAAAAATTCGAGTGGAATCTCCACAGGCTCTTAAACCTGCGGCAGTTGCTCCACCGGTTTCTACTATGCCCCCACCGATGCCACCAGAGCCTTCACCTCGTCAACCAAGGCAGCATTTTGCTCCGTCACCTTCTTTGCCACCACCCCCACCCACAAACAACCTTGCTCAAGCAAGGGAGCAGCTTCCACTCCCACCCCCACCTGCACTTCCTGATAAAGTCGACACTCCCATCGTCACATTAGATGACCTCTTCAAGAAAACCAAAGCTACTCCTCGCATCTACTATTTACCTTTATCAGATGAACAGGTGCAGGTAAAACGTGCAGCAGCAGCAAGGGGAAAAGACACCAAGCAGTAAGTCGAGACAATGCCCAGTGTCTCAGTGTTGTATTGTGGCTGCTGCTACTGCCGCCCTGTGGATTCCTTAGTGATTTTAGAGTTTGCAAAGGTAAAAAAAAAGCGTAGAGTGGCATGTTTTTGAATGTCTTGAGTGCTGGCAGGGAGGAATTTATCTCTGTTAAGCTGAAAATGGCAAAATAGAGTATCAGATGGGTAGGTTTTTCTTGCATATTGGTTAGGATATTGAGAATTGACTTCTAAAATTGAGATTACTCTGTATTTGGTTATGTAATCATATTTACCTGTCGGAACAAATGAACCTATGAGTTAGATTTGTTGTATCACAGGATGCCTTCAACCTCTTTGGATCTCGTTTCTTACTGTTCTTTTGACTGTTCTTTAAATGTGTCAGCTTCTTGGTTGTATTGTATTTAACAAAGATATTTAGACCATATTCTTAGAGCTTCTACATCTCTACAATTTATTCAAT

mRNA sequence

ATGTCTTCGAAATCGAAATATCAAGTTCTTGACAATCGACCCATTGATCAGTGGAGGGTTACGGAGTTGAAAGAGGAGCTTAAGAGACGAAAATTAACCATCAGAGGCCTGAAGGAAGATTTGGTAAAACGGTTGGATGAAGCGCTTCGAAATGAAAGGGAAGAAAATGCGGAGGAAACCGATGGTGTTGATGGTGACCCTCCAGTTACAAATAGTGACAATAACCAAGTGCATGCATCTTCGGCAAAAGACTCAAATGAAGATGCTAAAAAGATTCTGAATGTAGAAGATGTTGAAGTTCAGGTTGACAGGAATGACAGTACTGCAGCTGGGGACGATGGGGCTAGTCTCAATGGTTGTCCTAGGGTAGAAGAGGGGTCGGCTATCCATGTCACTTCTGTGGAAACTAAAATTACGGTAACTGAAAATGTGGCTTCTGAAGTAGCGTTAGGTGTGGAAGGTTTGCAGAATATGGAAAGCAAGGATAACGAAAATTCGAAGGTCGAGTTGGAGATTGAGAAATCGAAGCCCCAGGTGGATAGTGAGGATTCAAAGTCCCAGCTGGATGATGTGAAAACGGAGCTCGAGGTGGAGAATGAGAATTTGAAGTCTCAGCAGGCAGATATCGTGCACGACTTGTCTGCTTCAGACAGCCAGGTATCTGAGGTCAGCCCTGTTTTAGGGTCTCAAGTAAGAACTGATTCTATTTCTACTGATTCTGTGACAATTAATCAAATGATTGAACTAAAGGAAAATATATCTGCTGATCATGTAAAATTAGAACTAGATGTTAAGCAGGAGATGGTGGAACCATCATCCAGCATTATTGTCCCAGATGCTGGCGAATCACATCCAATGGATGTTGAAGAGCCATCTGTGAACAAGAATGTTGAAGAGTCACTTGCAAACAGAGATGTTGTGGAGTCACCTGAGAACAAAGATGTTATAGAGCCTATTGTGAATGAAGATGTTGAGGAGAAATATGATGTTAAGGACATGATTTCTGAGGTTCATGAGAAGCATGATGACACGGGGTTTTCTGAAAAGCTAAATTTAGATAGAAGTTCTGGGGACGATTCAATAGAAGATGCCATAGAGACTAAGACTGTTTTGGGGAATAATCCTAAAGAAATGGGAGAGAAGAATGTAAAGAGTGAGGGCCTTATATGCAAAGAGGAAAAGGTTGGAGACATAGCAGTGCGAGGTTCAACTGCAGATAAAAAGTATCTTGATACAGAGAATGAGGTTTCATCTTTGCCTGCTGAAAAAAGAAAGCTTCATGAAGTAATTGCATCATTACTGTGTTATGTTGTTGAACTAATATTTTCTCCAGCTACGAACTTGATGTGCTGTTTGATTGGTAGACGTGAAAATCAAGCAGTGGTTGGAAATGAATCTGTAAAGAGACAGTGTAGGTGGAATGCTGAAAACCTCAAAATTCCAGAGCCTCAAAACACTGCTCATACATCTACTAGTAATTCAAAGGACATTCATCAGTCCATTACTCCGAAACGCAACTTCTCCAGATCTGACTCCACAGCTAGTGAAGATCCATCGAAGGAACGTGTTGTTCCACCATCACCAAAACCTCCCACAAATTCACTAAAAATCGACCGTTTTCTGCGTCCATTTACCCTCAAAGCTGTGCAGGAGCTTCTGGGTAAGACTGGTAGTGTCTCCAGCTTCTGGATGGATCACATCAAGACGCATTGCTATGTAACTTACTCATCGGTGGAAGAAGCCATGAAGACTAGAGATGCTGTTTACAACTTGCAATGGCCACCAAATGGTGGGCGTCTTCTTATAGCTGAGTTTGTTGATCCTCAAGAAGTAAAAATTCGAGTGGAATCTCCACAGGCTCTTAAACCTGCGGCAGTTGCTCCACCGGTTTCTACTATGCCCCCACCGATGCCACCAGAGCCTTCACCTCGTCAACCAAGGCAGCATTTTGCTCCGTCACCTTCTTTGCCACCACCCCCACCCACAAACAACCTTGCTCAAGCAAGGGAGCAGCTTCCACTCCCACCCCCACCTGCACTTCCTGATAAAGTCGACACTCCCATCGTCACATTAGATGACCTCTTCAAGAAAACCAAAGCTACTCCTCGCATCTACTATTTACCTTTATCAGATGAACAGGTGCAGGTAAAACGTGCAGCAGCAGCAAGGGGAAAAGACACCAAGCAGTAAGTCGAGACAATGCCCAGTGTCTCAGTGTTGTATTGTGGCTGCTGCTACTGCCGCCCTGTGGATTCCTTAGTGATTTTAGAGTTTGCAAAGGTAAAAAAAAAGCGTAGAGTGGCATGTTTTTGAATGTCTTGAGTGCTGGCAGGGAGGAATTTATCTCTGTTAAGCTGAAAATGGCAAAATAGAGTATCAGATGGGTAGGTTTTTCTTGCATATTGGTTAGGATATTGAGAATTGACTTCTAAAATTGAGATTACTCTGTATTTGGTTATGTAATCATATTTACCTGTCGGAACAAATGAACCTATGAGTTAGATTTGTTGTATCACAGGATGCCTTCAACCTCTTTGGATCTCGTTTCTTACTGTTCTTTTGACTGTTCTTTAAATGTGTCAGCTTCTTGGTTGTATTGTATTTAACAAAGATATTTAGACCATATTCTTAGAGCTTCTACATCTCTACAATTTATTCAAT

Coding sequence (CDS)

ATGTCTTCGAAATCGAAATATCAAGTTCTTGACAATCGACCCATTGATCAGTGGAGGGTTACGGAGTTGAAAGAGGAGCTTAAGAGACGAAAATTAACCATCAGAGGCCTGAAGGAAGATTTGGTAAAACGGTTGGATGAAGCGCTTCGAAATGAAAGGGAAGAAAATGCGGAGGAAACCGATGGTGTTGATGGTGACCCTCCAGTTACAAATAGTGACAATAACCAAGTGCATGCATCTTCGGCAAAAGACTCAAATGAAGATGCTAAAAAGATTCTGAATGTAGAAGATGTTGAAGTTCAGGTTGACAGGAATGACAGTACTGCAGCTGGGGACGATGGGGCTAGTCTCAATGGTTGTCCTAGGGTAGAAGAGGGGTCGGCTATCCATGTCACTTCTGTGGAAACTAAAATTACGGTAACTGAAAATGTGGCTTCTGAAGTAGCGTTAGGTGTGGAAGGTTTGCAGAATATGGAAAGCAAGGATAACGAAAATTCGAAGGTCGAGTTGGAGATTGAGAAATCGAAGCCCCAGGTGGATAGTGAGGATTCAAAGTCCCAGCTGGATGATGTGAAAACGGAGCTCGAGGTGGAGAATGAGAATTTGAAGTCTCAGCAGGCAGATATCGTGCACGACTTGTCTGCTTCAGACAGCCAGGTATCTGAGGTCAGCCCTGTTTTAGGGTCTCAAGTAAGAACTGATTCTATTTCTACTGATTCTGTGACAATTAATCAAATGATTGAACTAAAGGAAAATATATCTGCTGATCATGTAAAATTAGAACTAGATGTTAAGCAGGAGATGGTGGAACCATCATCCAGCATTATTGTCCCAGATGCTGGCGAATCACATCCAATGGATGTTGAAGAGCCATCTGTGAACAAGAATGTTGAAGAGTCACTTGCAAACAGAGATGTTGTGGAGTCACCTGAGAACAAAGATGTTATAGAGCCTATTGTGAATGAAGATGTTGAGGAGAAATATGATGTTAAGGACATGATTTCTGAGGTTCATGAGAAGCATGATGACACGGGGTTTTCTGAAAAGCTAAATTTAGATAGAAGTTCTGGGGACGATTCAATAGAAGATGCCATAGAGACTAAGACTGTTTTGGGGAATAATCCTAAAGAAATGGGAGAGAAGAATGTAAAGAGTGAGGGCCTTATATGCAAAGAGGAAAAGGTTGGAGACATAGCAGTGCGAGGTTCAACTGCAGATAAAAAGTATCTTGATACAGAGAATGAGGTTTCATCTTTGCCTGCTGAAAAAAGAAAGCTTCATGAAGTAATTGCATCATTACTGTGTTATGTTGTTGAACTAATATTTTCTCCAGCTACGAACTTGATGTGCTGTTTGATTGGTAGACGTGAAAATCAAGCAGTGGTTGGAAATGAATCTGTAAAGAGACAGTGTAGGTGGAATGCTGAAAACCTCAAAATTCCAGAGCCTCAAAACACTGCTCATACATCTACTAGTAATTCAAAGGACATTCATCAGTCCATTACTCCGAAACGCAACTTCTCCAGATCTGACTCCACAGCTAGTGAAGATCCATCGAAGGAACGTGTTGTTCCACCATCACCAAAACCTCCCACAAATTCACTAAAAATCGACCGTTTTCTGCGTCCATTTACCCTCAAAGCTGTGCAGGAGCTTCTGGGTAAGACTGGTAGTGTCTCCAGCTTCTGGATGGATCACATCAAGACGCATTGCTATGTAACTTACTCATCGGTGGAAGAAGCCATGAAGACTAGAGATGCTGTTTACAACTTGCAATGGCCACCAAATGGTGGGCGTCTTCTTATAGCTGAGTTTGTTGATCCTCAAGAAGTAAAAATTCGAGTGGAATCTCCACAGGCTCTTAAACCTGCGGCAGTTGCTCCACCGGTTTCTACTATGCCCCCACCGATGCCACCAGAGCCTTCACCTCGTCAACCAAGGCAGCATTTTGCTCCGTCACCTTCTTTGCCACCACCCCCACCCACAAACAACCTTGCTCAAGCAAGGGAGCAGCTTCCACTCCCACCCCCACCTGCACTTCCTGATAAAGTCGACACTCCCATCGTCACATTAGATGACCTCTTCAAGAAAACCAAAGCTACTCCTCGCATCTACTATTTACCTTTATCAGATGAACAGGTGCAGGTAAAACGTGCAGCAGCAGCAAGGGGAAAAGACACCAAGCAGTAA

Protein sequence

MSSKSKYQVLDNRPIDQWRVTELKEELKRRKLTIRGLKEDLVKRLDEALRNEREENAEETDGVDGDPPVTNSDNNQVHASSAKDSNEDAKKILNVEDVEVQVDRNDSTAAGDDGASLNGCPRVEEGSAIHVTSVETKITVTENVASEVALGVEGLQNMESKDNENSKVELEIEKSKPQVDSEDSKSQLDDVKTELEVENENLKSQQADIVHDLSASDSQVSEVSPVLGSQVRTDSISTDSVTINQMIELKENISADHVKLELDVKQEMVEPSSSIIVPDAGESHPMDVEEPSVNKNVEESLANRDVVESPENKDVIEPIVNEDVEEKYDVKDMISEVHEKHDDTGFSEKLNLDRSSGDDSIEDAIETKTVLGNNPKEMGEKNVKSEGLICKEEKVGDIAVRGSTADKKYLDTENEVSSLPAEKRKLHEVIASLLCYVVELIFSPATNLMCCLIGRRENQAVVGNESVKRQCRWNAENLKIPEPQNTAHTSTSNSKDIHQSITPKRNFSRSDSTASEDPSKERVVPPSPKPPTNSLKIDRFLRPFTLKAVQELLGKTGSVSSFWMDHIKTHCYVTYSSVEEAMKTRDAVYNLQWPPNGGRLLIAEFVDPQEVKIRVESPQALKPAAVAPPVSTMPPPMPPEPSPRQPRQHFAPSPSLPPPPPTNNLAQAREQLPLPPPPALPDKVDTPIVTLDDLFKKTKATPRIYYLPLSDEQVQVKRAAAARGKDTKQ

Homology

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BLAST of CmaCh16G006760 vs. ExPASy Swiss-Prot
Match: Q9UKV3 (Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens OX=9606 GN=ACIN1 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-18
Identity = 85/275 (30.91%), Postives = 132/275 (48.00%), Query Frame = 0


Query: 504  KRNFSRSDSTAS---EDPSKERVVPPSPKPP-TNSLKIDRFLRPFTLKAVQELLGKTGSV 563
            +R+ S+  S  S   +DP +   VP  P+   +N + I   +RPFTL  ++ELLG+TG++
Sbjct: 979  RRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGRTGTL 1038

Query: 564  --SSFWMDHIKTHCYVTYSSVEEAMKTRDAVYNLQWPPNGGRLLIAEFVDPQEVK----I 623
               +FW+D IK+HC+VTYS+VEEA+ TR A++ ++WP +  + L A++ +  E+     +
Sbjct: 1039 VEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDELDYHRGL 1098

Query: 624  RVESPQALKPAAVAPPVSTMPPPMPPEPSPRQPR-------------------------- 683
             V+ P   K      P    PPP PP   P+ PR                          
Sbjct: 1099 LVDRPSETKTEEQGIPRPLHPPPPPPVQPPQHPRAEQREQERAVREQWAEREREMERRER 1158

Query: 684  ------------QHFAPSPSLPPPPPTNNLAQAREQLPLPPPPALPDKVDTPIVTLDDLF 730
                        +    S S          A+++E+       A   + + P   LDDLF
Sbjct: 1159 TRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKA---QEEPPAKLLDDLF 1218

[Close]

BLAST of CmaCh16G006760 vs. ExPASy Swiss-Prot
Match: Q9JIX8 (Apoptotic chromatin condensation inducer in the nucleus OS=Mus musculus OX=10090 GN=Acin1 PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-17
Identity = 84/275 (30.55%), Postives = 131/275 (47.64%), Query Frame = 0


Query: 504  KRNFSRSDSTAS---EDPSKERVVPPSPKPP-TNSLKIDRFLRPFTLKAVQELLGKTGSV 563
            +R+ S+  S  S   +DP +   VP  P+   +N + I   +RPFTL  ++ELLG+TG++
Sbjct: 978  RRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGRTGTL 1037

Query: 564  --SSFWMDHIKTHCYVTYSSVEEAMKTRDAVYNLQWPPNGGRLLIAEFVDPQEVK----I 623
               +FW+D IK+HC+VTYS+VEEA+ TR A++ ++WP +  + L A++ +  E+     +
Sbjct: 1038 VEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDELDYHRGL 1097

Query: 624  RVESPQALKPAAVAPPVSTMPPPMPPEPSPRQPR-------------------------- 683
             V+ P   K      P    PPP PP   P  PR                          
Sbjct: 1098 LVDRPSETKAEEQGAPRPLHPPPPPPVQPPPHPRAEQREQERAVREQWAEREREMERRER 1157

Query: 684  ------------QHFAPSPSLPPPPPTNNLAQAREQLPLPPPPALPDKVDTPIVTLDDLF 730
                        +    S S          A+++E+       A   + + P   LDDLF
Sbjct: 1158 TRSEREWDRDKVREGPRSRSRSRDRRRKERAKSKEKKSEKKEKA---QEEPPAKLLDDLF 1217

[Close]

BLAST of CmaCh16G006760 vs. TAIR 10
Match: AT4G39680.1 (SAP domain-containing protein )

HSP 1 Score: 396.0 bits (1016), Expect = 6.7e-110
Identity = 309/737 (41.93%), Postives = 409/737 (55.50%), Query Frame = 0


Query: 3   SKSKYQVLDNRPIDQWRVTELKEELKRRKLTIRGLKEDLVKRLDEALRNEREEN------ 62
           S S + VLDNRPID+W+VTELKEELKRR+LT RGLKE+LV+RLDEALR E+EE+      
Sbjct: 2   SSSPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQEESERINSA 61

Query: 63  ----AEETDGVDGDPPVTNSDNNQVHASSAKDSNEDAKKILNVEDVEVQVDRNDSTAAGD 122
               AE+ +      PVT  D NQ    +  ++    +      +   +  +   T    
Sbjct: 62  TVAAAEKANQEPQMFPVTVGDRNQTTPVTPVEAAFSTETTPVTAEKTPEPTQTKITTEAS 121

Query: 123 DGASLNGCPRVEEGSAIHVTSVETKITVTENVASEVALGVEGLQNMESKDNENSKVELEI 182
            G      P   E        V      ++    E    V  +  ++S         +++
Sbjct: 122 AGVETTPAPVFSE------PEVNAVPFASDEDEKEKVDDVRDIAGLDSSVVARDAAVVQV 181

Query: 183 EKSKPQVDSEDSKSQLDDVKTELEVENENLKSQQADIVHDLSASDSQVSEVSPVLGSQVR 242
             S+ + ++ +  S LD           + K+Q ++ V + SA  +QVSEV PV G +V+
Sbjct: 182 ASSEHKSENNEPFSGLD---------GGDSKAQPSEAVLEKSAMYNQVSEVIPVTGFEVK 241

Query: 243 TDSISTDSVTINQMIELKENISADHVKLELDVKQEMVEPSSSIIVPDAGESHPMDVEEP- 302
           +D ISTDSV+ N+ IELK+N  AD+VKLE +V  +  EPS+ +     GESHPMDVEEP 
Sbjct: 242 SDCISTDSVSNNEKIELKDNKIADNVKLEQNV-NKFQEPSTVV-----GESHPMDVEEPL 301

Query: 303 ----SVNKNVEESLANRDVVESPENKDVIEPIVNEDVEEKYDVKDMISEVHEKHDDTGFS 362
               SV    + + AN D+++  EN  +                           D G S
Sbjct: 302 EQKTSVGGGDDSNAANADMIK--ENNII---------------------------DAGDS 361

Query: 363 EKLNLDRSSGDDSIEDAIETKTVLGNNPKEMGEKNVKSEGLICKEEKVGDI-AVRGSTAD 422
           EKLNLDRSSGD+S+ED  ETK    +      +K+ K E ++ KEE   D+ A +G + +
Sbjct: 362 EKLNLDRSSGDESMEDEPETKQ---SESITSDDKSAKIE-MLSKEESRADMDAGKGKSPE 421

Query: 423 KKYLDTENEVSSLPAEKRKLHEVIASLLCYVVELIFSPATNLMCCLIGRRENQAVVGNES 482
            K          + ++KRKL                 PA           + +AV  NE 
Sbjct: 422 NK------SHPLVASDKRKL-----------------PA----------NDQEAVGNNEP 481

Query: 483 VKRQCRWNAENLKIPEPQNTAHTSTSNSKDIHQSITPKRNFSRSDSTASEDPSKERVVPP 542
            KR+ RWN+ ++K+PE Q T   + + +    +S   KR+FSRSDS+ SED  KERVVPP
Sbjct: 482 AKRR-RWNSNSIKVPEAQITNSATPTTTP---RSTGLKRDFSRSDSSVSEDGPKERVVPP 541

Query: 543 SPKPPTNSLKIDRFLRPFTLKAVQELLGKTGSVSSFWMDHIKTHCYVTYSSVEEAMKTRD 602
           SPK PTNSL+IDRFLRPFTLKAVQELLGKTG+V+SFWMDHIKTHCYV+Y SVEEA  TR+
Sbjct: 542 SPKEPTNSLRIDRFLRPFTLKAVQELLGKTGNVTSFWMDHIKTHCYVSYPSVEEAAATRE 601

Query: 603 AVYNLQWPPNGGRLLIAEFVDPQEVKIRVESPQALKPAAVAPPVSTMPPPMPPEPSPRQP 662
           AVYNLQWPPNGGR LIAEFV  +EVK ++E+                  P+PP+P  +  
Sbjct: 602 AVYNLQWPPNGGRHLIAEFVRAEEVKEKLEA------------------PLPPQPQHQPQ 629

Query: 663 RQHFA--PSPSLPPPPPTNNLAQAREQLPLPPPPAL-PDKVDTPIVTLDDLFKKTKATPR 721
            Q  +  P  +LPPPPP        E+LPLPPPP + P++ + PIVTLDDLFKKTKA PR
Sbjct: 662 AQTLSRPPPTALPPPPPLAKPPHVVERLPLPPPPPIAPEEQEPPIVTLDDLFKKTKAIPR 629

[Close]

BLAST of CmaCh16G006760 vs. TAIR 10
Match: AT4G39680.2 (SAP domain-containing protein )

HSP 1 Score: 396.0 bits (1016), Expect = 6.7e-110
Identity = 309/737 (41.93%), Postives = 409/737 (55.50%), Query Frame = 0


Query: 3   SKSKYQVLDNRPIDQWRVTELKEELKRRKLTIRGLKEDLVKRLDEALRNEREEN------ 62
           S S + VLDNRPID+W+VTELKEELKRR+LT RGLKE+LV+RLDEALR E+EE+      
Sbjct: 2   SSSPFPVLDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRAEQEESERINSA 61

Query: 63  ----AEETDGVDGDPPVTNSDNNQVHASSAKDSNEDAKKILNVEDVEVQVDRNDSTAAGD 122
               AE+ +      PVT  D NQ    +  ++    +      +   +  +   T    
Sbjct: 62  TVAAAEKANQEPQMFPVTVGDRNQTTPVTPVEAAFSTETTPVTAEKTPEPTQTKITTEAS 121

Query: 123 DGASLNGCPRVEEGSAIHVTSVETKITVTENVASEVALGVEGLQNMESKDNENSKVELEI 182
            G      P   E        V      ++    E    V  +  ++S         +++
Sbjct: 122 AGVETTPAPVFSE------PEVNAVPFASDEDEKEKVDDVRDIAGLDSSVVARDAAVVQV 181

Query: 183 EKSKPQVDSEDSKSQLDDVKTELEVENENLKSQQADIVHDLSASDSQVSEVSPVLGSQVR 242
             S+ + ++ +  S LD           + K+Q ++ V + SA  +QVSEV PV G +V+
Sbjct: 182 ASSEHKSENNEPFSGLD---------GGDSKAQPSEAVLEKSAMYNQVSEVIPVTGFEVK 241

Query: 243 TDSISTDSVTINQMIELKENISADHVKLELDVKQEMVEPSSSIIVPDAGESHPMDVEEP- 302
           +D ISTDSV+ N+ IELK+N  AD+VKLE +V  +  EPS+ +     GESHPMDVEEP 
Sbjct: 242 SDCISTDSVSNNEKIELKDNKIADNVKLEQNV-NKFQEPSTVV-----GESHPMDVEEPL 301

Query: 303 ----SVNKNVEESLANRDVVESPENKDVIEPIVNEDVEEKYDVKDMISEVHEKHDDTGFS 362
               SV    + + AN D+++  EN  +                           D G S
Sbjct: 302 EQKTSVGGGDDSNAANADMIK--ENNII---------------------------DAGDS 361

Query: 363 EKLNLDRSSGDDSIEDAIETKTVLGNNPKEMGEKNVKSEGLICKEEKVGDI-AVRGSTAD 422
           EKLNLDRSSGD+S+ED  ETK    +      +K+ K E ++ KEE   D+ A +G + +
Sbjct: 362 EKLNLDRSSGDESMEDEPETKQ---SESITSDDKSAKIE-MLSKEESRADMDAGKGKSPE 421

Query: 423 KKYLDTENEVSSLPAEKRKLHEVIASLLCYVVELIFSPATNLMCCLIGRRENQAVVGNES 482
            K          + ++KRKL                 PA           + +AV  NE 
Sbjct: 422 NK------SHPLVASDKRKL-----------------PA----------NDQEAVGNNEP 481

Query: 483 VKRQCRWNAENLKIPEPQNTAHTSTSNSKDIHQSITPKRNFSRSDSTASEDPSKERVVPP 542
            KR+ RWN+ ++K+PE Q T   + + +    +S   KR+FSRSDS+ SED  KERVVPP
Sbjct: 482 AKRR-RWNSNSIKVPEAQITNSATPTTTP---RSTGLKRDFSRSDSSVSEDGPKERVVPP 541

Query: 543 SPKPPTNSLKIDRFLRPFTLKAVQELLGKTGSVSSFWMDHIKTHCYVTYSSVEEAMKTRD 602
           SPK PTNSL+IDRFLRPFTLKAVQELLGKTG+V+SFWMDHIKTHCYV+Y SVEEA  TR+
Sbjct: 542 SPKEPTNSLRIDRFLRPFTLKAVQELLGKTGNVTSFWMDHIKTHCYVSYPSVEEAAATRE 601

Query: 603 AVYNLQWPPNGGRLLIAEFVDPQEVKIRVESPQALKPAAVAPPVSTMPPPMPPEPSPRQP 662
           AVYNLQWPPNGGR LIAEFV  +EVK ++E+                  P+PP+P  +  
Sbjct: 602 AVYNLQWPPNGGRHLIAEFVRAEEVKEKLEA------------------PLPPQPQHQPQ 629

Query: 663 RQHFA--PSPSLPPPPPTNNLAQAREQLPLPPPPAL-PDKVDTPIVTLDDLFKKTKATPR 721
            Q  +  P  +LPPPPP        E+LPLPPPP + P++ + PIVTLDDLFKKTKA PR
Sbjct: 662 AQTLSRPPPTALPPPPPLAKPPHVVERLPLPPPPPIAPEEQEPPIVTLDDLFKKTKAIPR 629

The following BLAST results are available for this feature:

BLAST of CmaCh16G006760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UKV3	2.6e-18	30.91	Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens OX=9606 ...	[more]
Q9JIX8	1.0e-17	30.55	Apoptotic chromatin condensation inducer in the nucleus OS=Mus musculus OX=10090...	[more]

BLAST of CmaCh16G006760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39680.1	6.7e-110	41.93	SAP domain-containing protein	[more]
AT4G39680.2	6.7e-110	41.93	SAP domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 181..208
None	No IPR available	COILS	Coil	Coil	coord: 20..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 482..536
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 482..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 624..685
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 628..664
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..82
None	No IPR available	PANTHER	PTHR47031	SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 4..428 coord: 457..724
None	No IPR available	PANTHER	PTHR47031:SF3	SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 457..724
None	No IPR available	PANTHER	PTHR47031:SF3	SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN	coord: 4..428
IPR003034	SAP domain	SMART	SM00513	sap_9	coord: 15..49 e-value: 2.0E-8 score: 44.0
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 17..49 e-value: 4.2E-9 score: 36.0
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 15..49 score: 9.286949
IPR036361	SAP domain superfamily	GENE3D	1.10.720.30	SAP domain	coord: 2..61 e-value: 5.2E-10 score: 40.8
IPR036361	SAP domain superfamily	SUPERFAMILY	68906	SAP domain	coord: 15..52
IPR032552	Acin1, RNSP1-SAP18 binding (RSB) motif	PFAM	PF16294	RSB_motif	coord: 685..720 e-value: 3.4E-13 score: 49.7
IPR034257	Acinus, RNA recognition motif	CDD	cd12432	RRM_ACINU	coord: 532..619 e-value: 5.45571E-37 score: 131.571
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 525..614

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006760.1	CmaCh16G006760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity