CmaCh16G006710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	UBP1-associated protein 2B-like isoform X2
Location	Cma_Chr16: 3506020 .. 3511647 (-)
RNA-Seq Expression	CmaCh16G006710
Synteny	CmaCh16G006710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAACCAATAAAACCACCAAAAGAAAGCTGGTGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGCTAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTCTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGACACGACCCGAGAAACCCTAATGTCAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGACTAAGGCGTTGAAGGAACCTAGGAAGAAGATTAATAACCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCGGTACCGCCCCCGCAAAGCCATGAGATTGTCTCGCGGAAGATTTATGTCGCTAATGTGCACCATAACGTGGATGCTGAGAGGCTTAGGGCTTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGAGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAAGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGCCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACGCAGGCATCGAAGAGCTTGGGGCAAAGTCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCAATTGTTCGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGAATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCCGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAGGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGTTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGTGGATACACGTCACATTTGTGGTATGAGATGTTTCATATTCTTTTTATTTACTGCACTTTAAGCCTTCTATCATTTGTATGTTTCAACTTTTCATTCAGTGCTTAGCGTTGATTACAGTGATAGGTAGTATGTATAGATTATTAATGAGTGCTGTTAGGACTGCCATCCACAACAGCCTGCGTGTACAATTTTGATTTAGGTAATTGGTATATAAAGTACCTAAGGCTACCATTAGGTGGTAATTCTAAGAATTTAGTATATAAAATACCCAAGGCTACCATTAGGTGGTAATTCTAAGAATTTATAGTATTGTAATCCTCTTATTCACAAGGTGGTTATCAAACTTTAAAATGGTTAAAGATGCCCTTCTCAAGGTCATACCTAGGCAGCTTTATTTAATACTCCCCACATATTATCTATCTATATTCAGGATGCCAGTGGAGCTATCAAAGTAAAGTAGTTGAAACGGAATTGTAGAGACTTCTTTGAAATGAGTTCGTTAAGGAAGGAGGTTTATGAATTGTATCTAGTGAACTAGAGGAGGATAGCTTGATGCTGTCGTGATGCAAGACGTTTTAGGAGGTCTAACGTTTATTGGGTGCAGATAGATGTGACTCCAGTTATGGTAAAATTTTATGCTTAACAGGTCTATCAATTTAAGAATAGTGATGTTGAAATTGACTTATGGAAAACCGAAGTGTGATCAAAATATTAGCTAAATGGACTACCGAGCATAAAAGAACCGAATCAAATTGACCGAATTAACCCAATTTGTATTACCTAACTATTTTCTGCTCATGAAATTGTACCTGCCAATCTGCATTGCTCAATTGGTCCAAATTGACTTGATAGGGTTGGGTTTTTCAATTTTGATTTGGGCTCATAGCCCATTAAAAAGGGTGTAGAAAATATTTACACGTTTTAGATACTCTTAGGCTTTTCTTGTTGGTCCTCATGCAACAAAAGAGCAGCTCTTCACTAAAAGTTGATTGCATTGATGCCTGATGGAGAGAAGGTCCCTGCCCTTGGATCCGAGACCAAACTTTTTCTTAAGAGGATAGATGGAGAAATTTATGTGAACTCTAAGTAGATTCACAATGAACGTACATCTTTGATAGGTATAAAAATAATTCTATTTAAAGCTGCTTTGATAATTTGCATGGCACTCATGGTGCATCTATTTGTGCCAAGGGTCCTAGACTGGATTCTTACCTAGGCAACATTTAGATCTGTCTCACAATTCATTGGAACACCAAAGCGATTAAGATTAACAAGTCTTGGCATTTTCTTATTGATGATAGTCAACTAATTTGAAAGAGGAATCAAGGTAAGGCTTTTGAAACTTTTAAAGATGTTGGGAGTGTTTTGGAGTAATAACGTATCATAGTGAATTACCTTGTTCTTGAGATGTGTGCTAAAACATCATGTGTAAAACTAAACAGCTATTGAAATAAAATTGAAGATAATACTATTGTATCCCCTAACGTCGTACATCTAGCTGAGAGAGTGGGGCTAGAGATAGGTCTTTCGGTTTGCTGTTGTTGGGTGGTGAAGGATCAAGAATGAGAGGGAAGGTGTGCTTGTTAAGTGCAGTGACAGATGGCAATGGCATATGGTCAGGGACAACTGCCAAGTGGATCTCAAGGTGGTGGAGGCAGGTATGGAGGCGATGGGAATGGCTGAACTTGAGACTGCTATAGCTGTGGTGAATCTGGACATTTCACCGGAGAGTATCCACACCGTGTCCATTAATATCATACATTGGTGATTGACAGTTACTTTTCTTGCTTGTTGATGTGCTTGATTAGGTTTCGTTCACTATCTCGGTTTCAATATAATGGGTCTTTAAGCTGGGTCTGTTAGGTGTTTTGAGATAGGATCTAGAAGCTCTCTTTATGGATTTCCCACCCGCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTATGAGAAACCTTTAGATGTATTAAGAAGAACAAAACCTCAAAAATAAACCTAAAGGGCAGAGGAAGAAAGAGCCATTCTCAAATGCTAATCACATAAAAGCCTTCCAATCCTGAAGAATCATGGAAAGCAGGTAAGTACAAAATGATTTGCTGTTTGGCACCAATCTTAACTTGGACTGGTGTTTGAATTAGGGATGTTTTATCAGTGGTCCTTAGGAGGAGATGATTATTGGGAGGAACAAAAGGAAATTTAAGATACGAAGAGTTATTGGTAAGAGGTTCAAAAGGGACTCACATTAATGCTTCTCCCTTGTATTTCTTCTAATAAGTTTTTCAGTCATTTTCCTCCTGTTTTATTTTTTATTTTTACTATCAACAGTTGGAGCGCTTTTTTCTAAATCGTTTTGATGGTCCCTTTTTTGTTGGTTGGCCTTGTTCGCCTTTTCCGTTTTCCTTTTCTTTCCTTTATTATTATTATTATTATTATTGGGGATGTTCGGCTTCTACTTGTTCCTTCCCATTTATTAACGAAAGCCAGTTTCATATATATATATATATGTCGTGTTCGGTTACTTTTTCTGAAAAGTAATTATAATTACACTTTAGCTATCTAAAATCACTTGGATATTCAACTCACAACTGCTATCCCCAAACTTGAAGACAGCTCTACTCTAACTACGCCCCCCACCCGGACCCAAACCCAAACCCAAAAGAAAACTCTTCCTTGGGTCACTTTTGTTCTTAGCGAAATTCTGTCGTAGTTTGATTTATGACATGTTTTTCATTTATTTTCCAACAGAATTTGCCTGTCTTTAGATAATTTGAAAGTTATATCAGGTTGAAGATTTGCGTTCCTTTTGACTTCCATTGACCAGAAAACACTTCATCAATTTTTTTAATTTTATTTTATTTACTTATTATTTATTTCCTTGTGGTCATAAATACTTAAATCAATGCCGTTACATGTTGCTTGTCTTTTCAATTTTGAACAAACTTGGCTCGCTCTTTTTACTGCCCGACTTAGTCACTGGCCATTTTTTACAATTATTTCTTTTGGATTATTTTTTTATAGCACGATTTATTAAACTTGTTTTTATGCTTTCCTTTGATGATCATTCTTTTTCTATTCTTCTTCTGATTGTAACTATTTGGGGAACTGTGGATTTTTTTTTTTTTTTTTTTTTTGGTATTTCAGGCAATAATAATACTGTGAACGTATTTTTGGTTTCTGGTTTTTTTCCTTTTTTTTTTTCCCCCTTTTTTTCCTTCTTTCTTCCTTTGATTTCTTGTTTCATTTTTCTTATTTGAATCTTCAACTTCACTGTTTTGATGGGAGTATTTATTTGACAGGCCAGATTATTAGTTTGCGTTGTCTTATATCTTTTTAGATGCTTGGGAATCCATATTTGCGTTTGAGGTGCTGCTGAACTTGTGGATGAATGATCCTGTACTGTACTTTTGGGAGAGTTTATGTTAAGAGCTTCATTTGGGCTTTGATACCTTTTTCCCACAAACCCCTTTCGTCTCTTTTCACTTTTTTTTCCTTCTTTTTTTCCTTTTCTCCATTCCTCCCCACTTTTTAGTTGTTTTATGTAGTAAGAACCTGCTGCTGGGCAATAGTCATCTTACGTTTTATACTTCACCTTTGTCAATATTATCACTTTTAATATTTTTGAAGTTTTTTTTATACATATATTCTTTTTTTGTTGTAATTTCTTTTTCCTCGAGTATCACCTTCATTTTAATCTTCGGCTTCTGAGTTATAACCTTCCGCCCTATTAATAATAAATGGAAGTCCCTTTTTGTGTCCTGTTGGAGTTAATCAAGTGTTGTTGGAGGCTGCCAAGGATTATTCAGTTCCTTTTAGAGCATGGGTTCAATCTTTAGGAATAACCAAATCTTCTAAGCGAATCCAGCAGTGGTAGGATGATGATTAGTGTTATTTGATTAAGTGTGAAACTATTCTTCGGTCCTATTTAATCTGCTAATTTTTTAGGTTGTGAATATATATAATGCTCTTCTGTTACCGGTTCAGAATTTGCAGTGGAAGAACTTTTGTGATGCAGGTTTATTTCCTTGCTTTGCTTTGCTTTCCTTTCCTTTGGTAGCTGCTCTGCTTCATCGCCTTCATACTCATCATCAGTCTTTGCTCTTCCTTGTTTTCTTCATTTTCATTTTCTTCCTCGTTCGCTGCCCTCGTCGTCGTTGCCCTTCTCCATTTTTTCATACAATTCTCGAGGTCGTGACTAAAATGAACCTCAAATTCTTCATTTTTCATATCCCTGGTTATCAATTGGCTTGGTTTGATTCTCCAAGTTTTTCAGTTGGTAACTCTGAAGGTCGTGCAGAAGGCTGATGATGGGTAG

mRNA sequence

ATGGAGGAAACCAATAAAACCACCAAAAGAAAGCTGGTGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGCTAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTCTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGACACGACCCGAGAAACCCTAATGTCAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGACTAAGGCGTTGAAGGAACCTAGGAAGAAGATTAATAACCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCGGTACCGCCCCCGCAAAGCCATGAGATTGTCTCGCGGAAGATTTATGTCGCTAATGTGCACCATAACGTGGATGCTGAGAGGCTTAGGGCTTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGAGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAAGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGCCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACGCAGGCATCGAAGAGCTTGGGGCAAAGTCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCAATTGTTCGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGAATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCCGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAGGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGTTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGCAATAATAATACTGTGAACTTGGTAACTCTGAAGGTCGTGCAGAAGGCTGATGATGGGTAG

Coding sequence (CDS)

ATGGAGGAAACCAATAAAACCACCAAAAGAAAGCTGGTGAAGAAATCTGAAAACAAGGTAGACAAGAAACCAAAGAAGGAGCTAGATGATCCCGTTCCGCCTCAACCACACGACGACGATTCCGACTCCGATTTGGACGATCTTTCCAAACTCCTCCAGCCTTTCTCCAAGACACAACTAATCGAGCTCATTTGCAGCACTGCTCTTAAAGACCCCAATCTTGAAGCCCAAATTCGAGCGGCTGCCGACCGCGATGTCACTAACCGCAAAATCTTTGTTCATGGCCTCAGTTGGGACACGACCCGAGAAACCCTAATGTCAGTTTTTGAATCTTTTGGTGAAATTGAAGATTGCAATGTGGTTATGGACAAAAATACAGGGAAGGCTAAGGGATACGGGTTTATTTTGTTTAAATCCCGGCAGGGTGCGACTAAGGCGTTGAAGGAACCTAGGAAGAAGATTAATAACCGGATGACTTCGTGTCAATTGGCTTCTTTGGGTTCGGTACCGCCCCCGCAAAGCCATGAGATTGTCTCGCGGAAGATTTATGTCGCTAATGTGCACCATAACGTGGATGCTGAGAGGCTTAGGGCTTTCTTTGCGAAGTTTGGAGAGTTAGAGATGGGTCCGATAGGGTTTGATCCTGAGACAGGGAGATCGAGAGGTTATGCCATTTTTATTTATAGAACGAATGAAGGTGCGAAGAAGGCTCTTGAGGAGCCACACAAAGTGTTCGAAGGGAACAAATTGCACTGCCAGAGGGCGTCTGAGGGGAAGAACAAGAATCAAAATTCGACGCAGGCATCGAAGAGCTTGGGGCAAAGTCAGCCGTCGGTTATGGCGGCCATGGCCGCAGCTCCAAATTTGCAATTGTTCGCTCAACATCCGAGCCTTAATCCTATGTATGGTGGATATGGGAACCCAGCTTTGGGAGGTGGAATGTTGAACCAAGGAGTAGTTCCCATGAGTCAAGTGGGTCCGATTGGTAGTTCTGTTGGGGCTGGCATAGGTTTGAGTGGTTACAGTGGGGGGTCGTATGGCTTAAGCCAATTAGGTGCTGGTGGTTCGTCATTGCTAGGCTCTTATGGCCCTGGTTCGTCATCACTGAAGGGGTTGCCGCACATTTACTCAAGCTCAATGCTTGGTAAGACGGTTTCTGAATCGGGTCAGACGGCTGCTGGTGGATCTTACGGCAATAATAATACTGTGAACTTGGTAACTCTGAAGGTCGTGCAGAAGGCTGATGATGGGTAG

Protein sequence

MEETNKTTKRKLVKKSENKVDKKPKKELDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNRMTSCQLASLGSVPPPQSHEIVSRKIYVANVHHNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQNSTQASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMYGGYGNPALGGGMLNQGVVPMSQVGPIGSSVGAGIGLSGYSGGSYGLSQLGAGGSSLLGSYGPGSSSLKGLPHIYSSSMLGKTVSESGQTAAGGSYGNNNTVNLVTLKVVQKADDG

Homology

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BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot
Match: O80678 (UBP1-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=UBA2B PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.9e-62
Identity = 157/369 (42.55%), Postives = 212/369 (57.45%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           DDD +  ++D   LL+PFSK QL+ L+   A +  ++  +IR  AD D+ +RKIFVHGL 
Sbjct: 80  DDDEEEPIED---LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLG 139

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ++L+  F+ +GEIEDC  V+DK +G++KGYGFILFKSR GA  ALK+P+KKI  R
Sbjct: 140 WDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTR 199

Query: 158 MTSCQLASLGSVP-----PPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKFGELEMG 217
           MT+CQLAS+G V       P  H   E V RKIYV+NV  ++D ++L  FF++FGE+E G
Sbjct: 200 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEG 259

Query: 218 PIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEG----------- 277
           P+G D  TGR +G+A+F+YR+ E AKKALEEPHK FEG+ LHC +A++G           
Sbjct: 260 PLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNH 319

Query: 278 KNKNQNST-QASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY--------GGYG-NP 337
            + NQNS  Q + + G   P       A  N  + A +P++             G G N 
Sbjct: 320 NSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQ 379

Query: 338 ALGGGMLNQ-GVVPMSQVGPIGSSVGAGIGLS-----------GYSGGSYGLSQLGAGGS 366
           A G  +L   G      VG + S  G    +S           GY GG Y   Q G GG+
Sbjct: 380 AFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGG-YQTQQPGQGGA 439

[Close]

BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot
Match: Q9LES2 (UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-59
Identity = 147/348 (42.24%), Postives = 193/348 (55.46%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+KKI +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E AK+ALEEPHK FEG+ LHCQ+A +G    +
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGK 331

Query: 278 NSTQASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                                          H   NP Y      GYG P  G G L  G
Sbjct: 332 QQQHHHN-----------------------PHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VVPMSQVGPIGSSVGAGIG---LSGYSGGSYGLSQLGAGGSSLLGSYG 364
             P    GP    +   IG    +  +    GL+   A G +LLGS G
Sbjct: 392 -NPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411

[Close]

BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot
Match: Q9LJ04 (RNA-binding protein P OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-P PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-57
Identity = 153/391 (39.13%), Postives = 212/391 (54.22%), Query Frame = 0


Query: 13  VKKSENKVDKKPKKELDDPVPPQPHDDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDP 72
           V++ E + + +  ++ D     +  ++ ++ D D +  LL  F K QL+EL+ + AL   
Sbjct: 80  VEEVEVEEEVEVDEDEDGEGEGEEEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHE 139

Query: 73  NLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGY 132
           ++   +  AAD D   RKIFVHGL WD T ETL   F ++GEIED  VV D+ TGK KGY
Sbjct: 140 DVLTAVHRAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGY 199

Query: 133 GFILFKSRQGATKALKEPRKKINNRMTSCQLASLGSVPP--------------------P 192
           GFILF  R GA  AL+EP+KKI NR T+CQLAS+G VPP                    P
Sbjct: 200 GFILFSRRSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALP 259

Query: 193 QSHEIVSRKIYVANVHHNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAIFIYRTNE 252
              E   RKI+V+NV  ++D ++L  FF+K+GE+E GP+G D  TG+ +G+A+F+Y+T +
Sbjct: 260 PVSEYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLD 319

Query: 253 GAKKALEEPHKVFEGNKLHCQRASEGKNKNQNS-----TQASKSLGQSQPSVMAAMAAAP 312
            AKKAL+EPHK FEG  LHCQ+A +G   N+         A  S G+       A + + 
Sbjct: 320 SAKKALQEPHKQFEGVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAHSHSL 379

Query: 313 NLQLFAQHPSLNPMYGGYGNPALGGGMLNQGVVPM--SQVGPIGSSVGAGIGLSGYSGGS 372
                  H   +P+      P + GG    GV P     +  I +S G G+GL+   G  
Sbjct: 380 PGAAVGGHVMPSPVSSLTSLPGVAGG---PGVNPALGQALTAILASQGGGLGLNNILG-- 439

Query: 373 YGLSQLGAGGSSLL---GSYGPGSSSLKGLP 374
                +GA GS L     S G GSS L G+P
Sbjct: 440 -----VGANGSGLPNPGASAGLGSSGLPGMP 460

[Close]

BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot
Match: Q9LKA4 (UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.5e-47
Identity = 136/365 (37.26%), Postives = 197/365 (53.97%), Query Frame = 0


Query: 47  DLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLM 106
           D  K+++ F+  QL++L+    ++ P++   +R  AD D++ RK+F+ GL+ DTT E L 
Sbjct: 33  DARKIIERFTTDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLR 92

Query: 107 SVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNRMTSCQLASL 166
           S+F S+G++E+  V++DK TGK+KGYGF+ F    GA  ALKEP KKI+ R+T  QLA+ 
Sbjct: 93  SLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAAS 152

Query: 167 GSV-PPPQSHEIVSRKIYVANVHHNVDAERLRAFFAKFGELEMGPIGFDPETGRSRGYAI 226
           G+     Q  +I  RKIYVANV  ++ A+RL   F  +G++E GP+GFD  TG+SRG+A+
Sbjct: 153 GNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFAL 212

Query: 227 FIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQNSTQASKSLGQSQPSVMA---- 286
           F+Y+T EGA+ AL +P KV +G  L+C+ A +GK   +     ++  G     V      
Sbjct: 213 FVYKTAEGAQAALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMG 272

Query: 287 -AMAAAPNLQLFAQHPSLNPMYGGYGNPALGGGMLNQGVVPMSQVGPIGSSVGAGIGLSG 346
               A P              YG  G  +  GG    G  P   +    SS+  G+G +G
Sbjct: 273 MVRPAGP--------------YGAAGGISAYGGY--SGGPPAHHMNSTHSSM--GVGSAG 332

Query: 347 YSG--GSYGLSQLGAGGSSLLGSY-----GPGSSSLKGLPHIYSSSMLGKTVSESGQTAA 399
           Y G  G YG    G GG+ + G       GPG+ S  G   +  SSM G      G    
Sbjct: 333 YGGHYGGYG----GPGGTGVYGGLGGGYGGPGTGS--GQYRMPPSSMPG-----GGGYPE 368

[Close]

BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot
Match: Q9SHZ6 (UBP1-associated proteins 1A OS=Arabidopsis thaliana OX=3702 GN=UBA1A PE=1 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-40
Identity = 92/186 (49.46%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 5   NKTTKRKLVKKSENKVDKKPK--KELDDPVPPQPH----------DDDSDSDLD--DLSK 64
           +K+ KRKLVK      DKK K  K+   P    P+          D +SD++ D  +L +
Sbjct: 6   DKSKKRKLVKSKSTNFDKKQKINKQQQQPESSTPYSSSSSSSDSSDSESDNEFDPEELRE 65

Query: 65  LLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLSWDTTRETLMSVFE 124
           LLQP+SK QL++L+CS +    ++ + +  AADRDVT+RKIFV+GL W+TTRETL+ VFE
Sbjct: 66  LLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFE 125

Query: 125 SFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNRMTSCQLASLGSVP 177
            +GEIE+C VV+DK TGKAKG+GF++FK+R+GA +ALKEP+K+I NR  +CQLAS+G   
Sbjct: 126 GYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRILNRTATCQLASMGPAA 185

[Close]

BLAST of CmaCh16G006710 vs. TAIR 10
Match: AT2G41060.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-63
Identity = 157/369 (42.55%), Postives = 212/369 (57.45%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           DDD +  ++D   LL+PFSK QL+ L+   A +  ++  +IR  AD D+ +RKIFVHGL 
Sbjct: 80  DDDEEEPIED---LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLG 139

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ++L+  F+ +GEIEDC  V+DK +G++KGYGFILFKSR GA  ALK+P+KKI  R
Sbjct: 140 WDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTR 199

Query: 158 MTSCQLASLGSVP-----PPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKFGELEMG 217
           MT+CQLAS+G V       P  H   E V RKIYV+NV  ++D ++L  FF++FGE+E G
Sbjct: 200 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEG 259

Query: 218 PIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEG----------- 277
           P+G D  TGR +G+A+F+YR+ E AKKALEEPHK FEG+ LHC +A++G           
Sbjct: 260 PLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNH 319

Query: 278 KNKNQNST-QASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY--------GGYG-NP 337
            + NQNS  Q + + G   P       A  N  + A +P++             G G N 
Sbjct: 320 NSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQ 379

Query: 338 ALGGGMLNQ-GVVPMSQVGPIGSSVGAGIGLS-----------GYSGGSYGLSQLGAGGS 366
           A G  +L   G      VG + S  G    +S           GY GG Y   Q G GG+
Sbjct: 380 AFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGG-YQTQQPGQGGA 439

[Close]

BLAST of CmaCh16G006710 vs. TAIR 10
Match: AT2G41060.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-63
Identity = 157/369 (42.55%), Postives = 212/369 (57.45%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           DDD +  ++D   LL+PFSK QL+ L+   A +  ++  +IR  AD D+ +RKIFVHGL 
Sbjct: 80  DDDEEEPIED---LLEPFSKDQLLILLKEAAERHRDVANRIRIVADEDLVHRKIFVHGLG 139

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ++L+  F+ +GEIEDC  V+DK +G++KGYGFILFKSR GA  ALK+P+KKI  R
Sbjct: 140 WDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTR 199

Query: 158 MTSCQLASLGSVP-----PPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKFGELEMG 217
           MT+CQLAS+G V       P  H   E V RKIYV+NV  ++D ++L  FF++FGE+E G
Sbjct: 200 MTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEG 259

Query: 218 PIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEG----------- 277
           P+G D  TGR +G+A+F+YR+ E AKKALEEPHK FEG+ LHC +A++G           
Sbjct: 260 PLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKANDGPKQVKQHQHNH 319

Query: 278 KNKNQNST-QASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY--------GGYG-NP 337
            + NQNS  Q + + G   P       A  N  + A +P++             G G N 
Sbjct: 320 NSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQ 379

Query: 338 ALGGGMLNQ-GVVPMSQVGPIGSSVGAGIGLS-----------GYSGGSYGLSQLGAGGS 366
           A G  +L   G      VG + S  G    +S           GY GG Y   Q G GG+
Sbjct: 380 AFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPGYGAQAGYQGG-YQTQQPGQGGA 439

[Close]

BLAST of CmaCh16G006710 vs. TAIR 10
Match: AT3G56860.3 (UBP1-associated protein 2A )

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-60
Identity = 147/348 (42.24%), Postives = 193/348 (55.46%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+KKI +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E AK+ALEEPHK FEG+ LHCQ+A +G    +
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGK 331

Query: 278 NSTQASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                                          H   NP Y      GYG P  G G L  G
Sbjct: 332 QQQHHHN-----------------------PHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VVPMSQVGPIGSSVGAGIG---LSGYSGGSYGLSQLGAGGSSLLGSYG 364
             P    GP    +   IG    +  +    GL+   A G +LLGS G
Sbjct: 392 -NPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411

[Close]

BLAST of CmaCh16G006710 vs. TAIR 10
Match: AT3G56860.1 (UBP1-associated protein 2A )

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-60
Identity = 147/348 (42.24%), Postives = 193/348 (55.46%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+KKI +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E AK+ALEEPHK FEG+ LHCQ+A +G    +
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGK 331

Query: 278 NSTQASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                                          H   NP Y      GYG P  G G L  G
Sbjct: 332 QQQHHHN-----------------------PHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VVPMSQVGPIGSSVGAGIG---LSGYSGGSYGLSQLGAGGSSLLGSYG 364
             P    GP    +   IG    +  +    GL+   A G +LLGS G
Sbjct: 392 -NPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411

[Close]

BLAST of CmaCh16G006710 vs. TAIR 10
Match: AT3G56860.2 (UBP1-associated protein 2A )

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-60
Identity = 147/348 (42.24%), Postives = 193/348 (55.46%), Query Frame = 0


Query: 38  DDDSDSDLDDLSKLLQPFSKTQLIELICSTALKDPNLEAQIRAAADRDVTNRKIFVHGLS 97
           +DD D  + D   LL+PFSK Q++ L+   A K  ++  +IR  AD D  +RKIFVHGL 
Sbjct: 92  EDDDDEPIQD---LLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLG 151

Query: 98  WDTTRETLMSVFESFGEIEDCNVVMDKNTGKAKGYGFILFKSRQGATKALKEPRKKINNR 157
           WDT  ETL+  F+ +GEIEDC  V DK +GK+KGYGFIL+KSR GA  ALK+P+KKI +R
Sbjct: 152 WDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSR 211

Query: 158 MTSCQLASLG-----------SVPPPQSH---EIVSRKIYVANVHHNVDAERLRAFFAKF 217
           MT+CQLAS G           +V  P  H   E   +KIYV+NV   +D ++L  FF+KF
Sbjct: 212 MTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKF 271

Query: 218 GELEMGPIGFDPETGRSRGYAIFIYRTNEGAKKALEEPHKVFEGNKLHCQRASEGKNKNQ 277
           GE+E GP+G D  TGR +G+ +F+Y+++E AK+ALEEPHK FEG+ LHCQ+A +G    +
Sbjct: 272 GEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKAIDGPKPGK 331

Query: 278 NSTQASKSLGQSQPSVMAAMAAAPNLQLFAQHPSLNPMY-----GGYGNPALGGGMLNQG 337
                                          H   NP Y      GYG P  G G L  G
Sbjct: 332 QQQHHHN-----------------------PHAYNNPRYQRNDNNGYGPPG-GHGHLMAG 391

Query: 338 VVPMSQVGPIGSSVGAGIG---LSGYSGGSYGLSQLGAGGSSLLGSYG 364
             P    GP    +   IG    +  +    GL+   A G +LLGS G
Sbjct: 392 -NPAGMGGPTAQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLG 411

The following BLAST results are available for this feature:

BLAST of CmaCh16G006710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80678	2.9e-62	42.55	UBP1-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=UBA2B PE=2 SV=1	[more]
Q9LES2	3.0e-59	42.24	UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1	[more]
Q9LJ04	1.6e-57	39.13	RNA-binding protein P OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-P PE=1 SV=...	[more]
Q9LKA4	4.5e-47	37.26	UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1	[more]
Q9SHZ6	1.4e-40	49.46	UBP1-associated proteins 1A OS=Arabidopsis thaliana OX=3702 GN=UBA1A PE=1 SV=2	[more]

BLAST of CmaCh16G006710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41060.1	2.1e-63	42.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G41060.2	2.1e-63	42.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G56860.3	2.1e-60	42.24	UBP1-associated protein 2A	[more]
AT3G56860.1	2.1e-60	42.24	UBP1-associated protein 2A	[more]
AT3G56860.2	2.1e-60	42.24	UBP1-associated protein 2A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..162 e-value: 7.6E-22 score: 88.6 coord: 181..253 e-value: 5.9E-15 score: 65.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..157 e-value: 2.0E-16 score: 59.5 coord: 182..251 e-value: 4.6E-10 score: 39.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..189 score: 16.176081
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 180..257 score: 13.634825
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 176..281 e-value: 2.1E-18 score: 68.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..168 e-value: 3.8E-24 score: 87.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR10352	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	coord: 3..366
None	No IPR available	PANTHER	PTHR10352:SF38	UBP1-ASSOCIATED PROTEIN 2A-LIKE	coord: 3..366
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 89..164 e-value: 6.08137E-31 score: 111.553
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 69..168
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 172..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006710.1	CmaCh16G006710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding