CmaCh16G006670 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006670
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMitochondrial transcription termination factor family protein
LocationCma_Chr16: 3479784 .. 3482314 (+)
RNA-Seq ExpressionCmaCh16G006670
SyntenyCmaCh16G006670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTAGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA

mRNA sequence

ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA

Coding sequence (CDS)

ATGTACGCGCTGAGATCATCGTTCTCTATTTCCTCTCGCCATAATCCTCCCTCCTTGCTCCGAATTGATCCTCTCTTGTACTGTTTCTTCTCTTCTTCTTCCCACAGCCAAGCCTCTGCTTCATATGGAATCGTCGTTCAATACCTTATTGATACCTTTGAACTCTCCCCCGCCAGAGCGGTGTCGATTATGAGCAGCCGTAGAGGCATTGCATCAACGGAAAAGCCTCAATCCGTTTACAAATATCTTTCAGAGCTCGGATTCTCCGAAGCTCACATTCAATCGACGATTCGCCTTGCGCCGCAGATCGCGTTTTCCAACATCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGNCGAAAAGACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGTTTGGAAAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATCTCCTACAAGTTTTGCGGCGATGTTCTGATATGCTTATGCGATCTCCGTATACAAGGTTGCCTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATCTTGTTTCTATGGTTGTAGAGACGGGTTTTTCTACAAATACTAGAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGTCTAGAATTCTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCACTCTGAAGCCGAAGATCGAGTTCTTCCAGAATCTTGGCTTGGTCGGCTCCGATTTGGGTTGGTTCATTTCCAAGCATTCTACGCTTTTGACTATTAGTTTGGAGAAGAGATTGATGCCTAGTGTTGAGATTCTTAAGAGTGTTTTCCCCAAGGATGAGTGTAATAGCGATTTCCTGCAAGTTATGCGGCGATGTTCTGATATGCTTAAGCGATCTCCGTATACAAGGTTGCTTGTCAATATTAATTACTTACAAAGTTGTGGGATTGTTGGTTCTCAACTCTCTATGTTACTGAAGAGGCAACCTGCACTTTTTGGTATGCGTGAATCTCAAGTTAGAGATATTGTTTCTATGGTTGTAGAGACTGGTTTTTCTACAAATACTAAAATGTTTGTTCATGGACTTCATGCTATCAGTAGTGTAAGTAATGCGACCTTCAAGAAGAAAGTGGAATTGATTTGCAGCTTTGGAATAACTGAGAAGGAATGTATGAGAATGTTTACTTCTGCTCCTGTTTTGATAAGAACCTCCGTTGGTAAACTTAAACGAGGCCTAGAATTTTTTATGAATGAGGCAGAAGTCAGCAGATCAGATATTGTTCGTAAACCTACTTGTTTGATGCACGCCATGCAGGGGAGGGTGCTCCCTCGGTATAGAGTTCTTCAGGTCGTAAACTCGAAGAGGCTATCGAAGAAACACCTGCAATTGATCGATATATTGGGGATGTCTGATGAGAATTTCTTGGATAAATTCGTGCACAGGTTTCCTGATCATGTGACAGAATTGTTGGCGGCCTTTAGAGGTCAATGTATGGATGAATTGCAGCCTAAGGAGTTGGAAACATGA

Protein sequence

MYALRSSFSISSRHNPPSLLRIDPLLYCFFSSSSHSQASASYGIVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRRKDSEAEDRVLPESWLGRLRFGLEKRLMPSVEILKSVFPKDECNSDLLQVLRRCSDMLMRSPYTRLPVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDLVSMVVETGFSTNTRMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDILGMSDENFLDKFVHRFPDHVTELLAAFRGQCMDELQPKELET
Homology
[Close]
BLAST of CmaCh16G006670 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-07
Identity = 43/161 (26.71%), Postives = 80/161 (49.69%), Query Frame = 0 

Query: 75  KPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFIS 134
           K + V ++L +LG  ++ I + +   PQI   ++   LKP + F + LG+  +     IS
Sbjct: 231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290

Query: 135 KHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYL 194
           +   +LT S +K L  +VE L      +E      +++ RC +++  S   +L   + Y 
Sbjct: 291 RFPAILTYSRQK-LTSTVEFLSQTGLTEE---QIGRILTRCPNIMSYSVEDKLRPTMEYF 350

Query: 195 QSCGIVGSQLSMLLKRQPALFGMR-ESQVRDIVSMVVETGF 235
           +S  +    +++LL R P  FG+  ES ++ +    +E GF
Sbjct: 351 RSLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGF 384

[Close]
BLAST of CmaCh16G006670 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-06
Identity = 51/210 (24.29%), Postives = 92/210 (43.81%), Query Frame = 0 

Query: 69  GIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSD 128
           G +  E+ + + KY   LG  +  ++  + + P +   ++EKT+ PK+ F Q +G+    
Sbjct: 381 GCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEA 440

Query: 129 LGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLL 188
           +G  + K  +LLT SL K++ P V  L  +        D  +V+     +L  S  T+L 
Sbjct: 441 IGNMLVKFPSLLTNSLYKKIRPVVIFL--LTRAGVTQKDIGKVIAMDPALLGCSIGTKLE 500

Query: 189 VNINYLQSCGIVGSQLSMLLKRQPALFG------------MRESQVRDIVSMV-VETGFS 248
            N+ Y  S GI   QL  ++   P L              +R + +R +  ++     FS
Sbjct: 501 PNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLRPKYRYLRRTMIRPLQDLIEFPRFFS 560

Query: 249 TNTKMFVHGLHAISSVSNATFKKKVELICS 266
            + +  +   H I   +   FK +  L C+
Sbjct: 561 YSLERRIIPRHTIMVENRVNFKLRYMLACT 588

[Close]
BLAST of CmaCh16G006670 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 8.3e-05
Identity = 41/147 (27.89%), Postives = 72/147 (48.98%), Query Frame = 0 

Query: 15  NPPSLLRIDPLLYCFFSSSSHSQASASYGIVVQYLIDTFELSPARAVSIMSSRRGIASTE 74
           +P   LR++P L           A  S  + V+ L+ +  LS      I+     +  T 
Sbjct: 46  DPHKALRVNPSL---------RSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL-TS 105

Query: 75  KPQS----VYKYLS-ELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDL 134
            P+S    V ++LS E+  SE  I  +I   P++  S+++  L+P + F + LG VG D 
Sbjct: 106 DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDT 165

Query: 135 GWFISKHSTLLTISLEKRLMPSVEILK 157
               S+++ LL  ++E+ L+P +E L+
Sbjct: 166 --ITSRNTVLLVSNVERTLIPKIEYLE 180

[Close]
BLAST of CmaCh16G006670 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-04
Identity = 37/151 (24.50%), Postives = 67/151 (44.37%), Query Frame = 0 

Query: 81  KYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLL 140
           ++L  +G     I   I   P +    +E  +KP IE     G+    L + ++++  +L
Sbjct: 257 EHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDIL 316

Query: 141 TISLEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIV 200
            I L  +L     + +S       + DF +V+ R    +     T +L ++N+L SCG +
Sbjct: 317 GIELRDKLATQQSLFESSILVS--SEDFGRVIERMPQAISLG-RTAVLKHVNFLTSCGFL 376

Query: 201 GSQLSMLLKRQPALFGMRESQVRDIVSMVVE 232
            SQ+S ++   P L  +      DI+ M  E
Sbjct: 377 LSQVSKMVVACPQLLALN----MDIMKMSFE 400

[Close]
BLAST of CmaCh16G006670 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 214.9 bits (546), Expect = 2.4e-55
Identity = 124/311 (39.87%), Postives = 192/311 (61.74%), Query Frame = 0 

Query: 21  RIDPLLYCFFSSSSHSQASASYGIVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVY 80
           R D  L     SS+ + AS S    V++L D     P  A++I      + S E+P+SV 
Sbjct: 17  RWDRALSLHHFSSNATPASISNPAFVEFLRDNGFQKPL-AIAIAMRYPNLKSLEQPRSVI 76

Query: 81  KYLSELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLL 140
           + L    FS+  IQ +IR+ P++ F N+EK L+PK+ FF+++G  GS LG F+S++S+++
Sbjct: 77  QMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVV 136

Query: 141 TISLEKRLMPSVEILKS-VFPKDECNSDFLQVMRRCS-DMLKRSPYTRLLVNINYLQSCG 200
            +SL K+L+P+VEILKS V PK E   D   ++ RC   +L R P   LL NI+YL++CG
Sbjct: 137 GVSLVKKLIPTVEILKSIVAPKHE---DLPVILSRCGWLLLSRDPNLFLLPNISYLETCG 196

Query: 201 IVGSQLSMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKK 260
           IVGSQL+ LL+RQP +F + E ++R  VS  ++ GF+ N++M VH + ++SS+S  TF +
Sbjct: 197 IVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDR 256

Query: 261 KVELICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMH 320
           KV+L  + G +E E   +   +P LIR S  KL  G EF++    + R  + ++P  L +
Sbjct: 257 KVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSY 316

Query: 321 AMQGRVLPRRK 330
            ++ RV+PR K
Sbjct: 317 NLEKRVIPRLK 323

[Close]
BLAST of CmaCh16G006670 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 118.2 bits (295), Expect = 3.0e-26
Identity = 77/268 (28.73%), Postives = 133/268 (49.63%), Query Frame = 0 

Query: 541 LKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDFLQV 600
           L PK+ FF ++G+  S L   ++   T+LT SL  +L+PS   LKSV   DE     +  
Sbjct: 137 LLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDE---KIVAA 196

Query: 601 MRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDIVSMVVE 660
           +RR + +        L+ NINY+   G+    + +LL   P     +  + + I     E
Sbjct: 197 LRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQE 256

Query: 661 TGFSTNTKMFVHGLHAISSVSN-ATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGK 720
            GF+     FV  +HA+S   N + + K  E+   +G +E + M  F   P  +  S  K
Sbjct: 257 MGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERK 316

Query: 721 LKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDIL 780
           + R +E+F+NE  ++   I + P  L  +++ R++PR  V +V+ S  L K+   L  +L
Sbjct: 317 INRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLL 376

Query: 781 GMSDENFLDKFVHRFPDHVTELLAAFRG 808
              ++ FL+K V ++ + + EL+  + G
Sbjct: 377 VPVEKVFLEKLVIKYEEELPELMNLYLG 401

[Close]
BLAST of CmaCh16G006670 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-26
Identity = 84/299 (28.09%), Postives = 140/299 (46.82%), Query Frame = 0 

Query: 31  SSSSHSQASASYGIVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVYKYLSELGFSE 90
           S +   Q        V YL+D+  LS   A S  S    + S++KP SV     + GF+ 
Sbjct: 44  SENLEKQKPCLESFTVSYLVDSCGLSLESAKS-NSRFVKLVSSKKPDSVLALFKDHGFTN 103

Query: 91  AHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTISLEKRLMP 150
             I S I+  P++   + E  + PK+ FF ++G   SD    IS    +L+ SL KRL+P
Sbjct: 104 DQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIP 163

Query: 151 SVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQLSMLLKR 210
             + LKS+  ++E     L+   RC   LK +    L V+I   +  G+    +  L++ 
Sbjct: 164 CYDSLKSILVEEESVVKCLKRGIRCFS-LKITHCVSLRVSI--CRELGVPDKSIKWLVQA 223

Query: 211 QPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVELICSFGITE 270
            P  F  RE +  ++++ V   GF      FVH + A    S +  ++K +L   FG ++
Sbjct: 224 SPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSK 283

Query: 271 KECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRRK 330
           ++ +      P  +  S  K+   LE+ +N   +   DIV +P  L  +M+ R+ PR +
Sbjct: 284 EDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQ 338

[Close]
BLAST of CmaCh16G006670 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-18
Identity = 85/360 (23.61%), Postives = 154/360 (42.78%), Query Frame = 0 

Query: 29  FFSSSSHSQASASYG-----IVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVYKYL 88
           FFSS+S +  S   G       V YL+D+  L+   A SI S +        P SV   L
Sbjct: 33  FFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESI-SRKVSFEDKNNPDSVLNLL 92

Query: 89  SELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTIS 148
           +  GF+ + I + IR  PQ+  ++ EK+L PK++F Q+ G   S++   +S    +L   
Sbjct: 93  TSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKK 152

Query: 149 LEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQ 208
             K +    + +K    +    ++      +    L +      + N++ L+  G+    
Sbjct: 153 GHKTISVYYDFIKDTLLEKSSKNE------KLCHSLPQGNLENKIRNVSVLRELGMPHKL 212

Query: 209 L-SMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVEL 268
           L S+L+     + G  + +  + +  VVE GF   T  FV  L  I  ++  T ++KV L
Sbjct: 213 LFSLLISDSQPVCG--KEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHL 272

Query: 269 ICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRK----PTCLMH 328
             S G    +    F   P+ +R S  K+   +E F+     SR +  +     P C+  
Sbjct: 273 YKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLG-LGFSRDEFAKMVKHFPPCI-- 332

Query: 329 AMQGRVLPRRKDSEAEDRVLP----ESWLGRLRFGLEKRLMPSVEILKSVFPKDECNSDL 375
            +    + ++ +   +    P     S      + LEKR++P   ++K++  K    ++L
Sbjct: 333 GLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNEL 380

[Close]
BLAST of CmaCh16G006670 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 90.5 bits (223), Expect = 6.7e-18
Identity = 85/360 (23.61%), Postives = 154/360 (42.78%), Query Frame = 0 

Query: 29  FFSSSSHSQASASYG-----IVVQYLIDTFELSPARAVSIMSSRRGIASTEKPQSVYKYL 88
           FFSS+S +  S   G       V YL+D+  L+   A SI S +        P SV   L
Sbjct: 33  FFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESI-SRKVSFEDKNNPDSVLNLL 92

Query: 89  SELGFSEAHIQSTIRLAPQIAFSNIEKTLKPKIEFFQNLGLVGSDLGWFISKHSTLLTIS 148
           +  GF+ + I + IR  PQ+  ++ EK+L PK++F Q+ G   S++   +S    +L   
Sbjct: 93  TSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKK 152

Query: 149 LEKRLMPSVEILKSVFPKDECNSDFLQVMRRCSDMLKRSPYTRLLVNINYLQSCGIVGSQ 208
             K +    + +K    +    ++      +    L +      + N++ L+  G+    
Sbjct: 153 GHKTISVYYDFIKDTLLEKSSKNE------KLCHSLPQGNLENKIRNVSVLRELGMPHKL 212

Query: 209 L-SMLLKRQPALFGMRESQVRDIVSMVVETGFSTNTKMFVHGLHAISSVSNATFKKKVEL 268
           L S+L+     + G  + +  + +  VVE GF   T  FV  L  I  ++  T ++KV L
Sbjct: 213 LFSLLISDSQPVCG--KEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHL 272

Query: 269 ICSFGITEKECMRMFTSAPVLIRTSVGKLKRGLEFFMNEAEVSRSDIVRK----PTCLMH 328
             S G    +    F   P+ +R S  K+   +E F+     SR +  +     P C+  
Sbjct: 273 YKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLG-LGFSRDEFAKMVKHFPPCI-- 332

Query: 329 AMQGRVLPRRKDSEAEDRVLP----ESWLGRLRFGLEKRLMPSVEILKSVFPKDECNSDL 375
            +    + ++ +   +    P     S      + LEKR++P   ++K++  K    ++L
Sbjct: 333 GLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNEL 380

The following BLAST results are available for this feature:
BLAST of CmaCh16G006670 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JVI32.3e-0726.71Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O... [more]
F4IHL34.4e-0624.29Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O... [more]
Q84X538.3e-0527.89Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX... [more]
Q6AUK64.1e-0424.50Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja... [more]
BLAST of CmaCh16G006670 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64950.12.4e-5539.87Mitochondrial transcription termination factor family protein [more]
AT5G07900.13.0e-2628.73Mitochondrial transcription termination factor family protein [more]
AT1G21150.13.9e-2628.09Mitochondrial transcription termination factor family protein [more]
AT1G61970.16.7e-1823.61Mitochondrial transcription termination factor family protein [more]
AT1G61970.26.7e-1823.61Mitochondrial transcription termination factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 480..511
e-value: 9.4
score: 15.2
coord: 559..591
e-value: 260.0
score: 8.5
coord: 735..766
e-value: 490.0
score: 6.3
coord: 274..305
e-value: 9.4
score: 15.2
coord: 668..698
e-value: 910.0
score: 4.2
coord: 634..664
e-value: 3.6
score: 16.6
coord: 94..125
e-value: 0.12
score: 21.5
coord: 445..475
e-value: 750.0
score: 4.8
coord: 205..235
e-value: 3.6
score: 16.6
coord: 239..269
e-value: 910.0
score: 4.2
coord: 130..162
e-value: 260.0
score: 8.5
coord: 703..734
e-value: 9.4
score: 15.2
coord: 375..406
e-value: 190.0
score: 9.5
coord: 411..441
e-value: 2.2
score: 17.3
coord: 512..554
e-value: 260.0
score: 8.4
coord: 598..629
e-value: 130.0
score: 10.7
coord: 169..200
e-value: 130.0
score: 10.7
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 456..538
e-value: 9.9E-12
score: 44.4
coord: 540..691
e-value: 1.5E-11
score: 43.8
coord: 351..469
e-value: 1.5E-7
score: 30.7
coord: 169..262
e-value: 1.0E-6
score: 27.9
coord: 81..237
e-value: 9.1E-16
score: 57.7
coord: 679..787
e-value: 6.3E-15
score: 54.9
coord: 250..329
e-value: 1.9E-10
score: 40.2
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 31..329
coord: 349..539
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 540..807
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 333..540
e-value: 2.4E-31
score: 110.8
coord: 167..332
e-value: 1.8E-27
score: 98.1
coord: 541..593
e-value: 2.8E-6
score: 28.6
coord: 594..799
e-value: 4.6E-38
score: 132.9
coord: 58..166
e-value: 1.1E-17
score: 66.1
NoneNo IPR availablePANTHERPTHR13068:SF173EMB|CAB62602.1coord: 349..539
NoneNo IPR availablePANTHERPTHR13068:SF173EMB|CAB62602.1coord: 540..807
coord: 31..329

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006670.1CmaCh16G006670.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding