CmaCh16G006540 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiontransmembrane protein 97-like
LocationCma_Chr16: 3404581 .. 3405656 (-)
RNA-Seq ExpressionCmaCh16G006540
SyntenyCmaCh16G006540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAGTCAACGTCTCTCCCAGATCTGTGTAAGGTGAAGCAATGGGGGTTCTTCTGAAGCTCTTCGATTCAGTTCTATTTGTGTCCTTATTTGTACATGCCATGGCGCCGCCGCTCATCGGCGCCCAGTTATTGCTCCCCGGAGCCCTTTTCCCCGATGTTCTTGTTGATTTCAAGGAGCTGTACGTTCGACTGTCGGGAGACTATCTGATGGCCGAGGCGCCTCCCTTTTTCGTCGGCCTGCTTTGGCTGGAGCTTCTCCTTCAATGGCCGCTCACGGTTTTCAACCTCTACGCCATCTGGGCTGCAAAGTCATGGCTGCACACCACCTGTTTGATCTATGGCGTCTCCCTTTTCACTGCTATGGTATATTCTACTTCTCTCCTACCATCATGTGATTGATGAATTTCTATAATTGCCCACATATTCTCCTTCTCCAACTTTCTCTTTTCCTAACCGGGAATTCCGATGTGGGATCCACAATCCACTCCTTTTGGAGTCAACGTCCTAACTGGTACTCGTTCTTTTTGGAACCCAACGTCCTATTCTGGCACATCACCTTGTGTTCACCCCTGCCACTTATTTCTTTCTCTAATCAACGTGAGACTCCCAATCCACTCCCTTTCGGAGTGATACACCACCTTGTGTCCACCCTTTTCGGGGCTCAGCCTCCCCACTGGCACATCCTCCGTGTTTGCCTCTGATATCACTTGCAACCGCTCAAGCCCGCCATTAACAAATAATATCTTCTTTGAATTTTTCTTTTTGAATTTTTTCTCAAATTTTAAAAATGTATTTACTAGGGAAAGGTTTTCAGGCTCCTAAATAAATGTTTGTTTTCCTCTCCAACGGATGGTTGTAAATGAATAAGCCTATTTTAGGTTCTTTTTTCAGGTTGCTATAGCAGCTGAATTGATAGGGTCACAGAGGGCATCTGGACTGCTGTTGAAACTGTATCTCCCTTTCTTGGGTTTGGGAGTTTTAGCCACGCTACGTGGGCTGCTGCCGCGTTGCAGCAAGGCTACGCCCACCGGCCACGACGTTGGACCATCAATTGCCGGCAAAAAGAAGGTTTGA

mRNA sequence

GAGAAGTCAACGTCTCTCCCAGATCTGTGTAAGGTGAAGCAATGGGGGTTCTTCTGAAGCTCTTCGATTCAGTTCTATTTGTGTCCTTATTTGTACATGCCATGGCGCCGCCGCTCATCGGCGCCCAGTTATTGCTCCCCGGAGCCCTTTTCCCCGATGTTCTTGTTGATTTCAAGGAGCTGTACGTTCGACTGTCGGGAGACTATCTGATGGCCGAGGCGCCTCCCTTTTTCGTCGGCCTGCTTTGGCTGGAGCTTCTCCTTCAATGGCCGCTCACGGTTTTCAACCTCTACGCCATCTGGGCTGCAAAGTCATGGCTGCACACCACCTGTTTGATCTATGGCGTCTCCCTTTTCACTGCTATGAGGGCATCTGGACTGCTGTTGAAACTGTATCTCCCTTTCTTGGGTTTGGGAGTTTTAGCCACGCTACGTGGGCTGCTGCCGCGTTGCAGCAAGGCTACGCCCACCGGCCACGACGTTGGACCATCAATTGCCGGCAAAAAGAAGGTTTGA

Coding sequence (CDS)

ATGGGGGTTCTTCTGAAGCTCTTCGATTCAGTTCTATTTGTGTCCTTATTTGTACATGCCATGGCGCCGCCGCTCATCGGCGCCCAGTTATTGCTCCCCGGAGCCCTTTTCCCCGATGTTCTTGTTGATTTCAAGGAGCTGTACGTTCGACTGTCGGGAGACTATCTGATGGCCGAGGCGCCTCCCTTTTTCGTCGGCCTGCTTTGGCTGGAGCTTCTCCTTCAATGGCCGCTCACGGTTTTCAACCTCTACGCCATCTGGGCTGCAAAGTCATGGCTGCACACCACCTGTTTGATCTATGGCGTCTCCCTTTTCACTGCTATGAGGGCATCTGGACTGCTGTTGAAACTGTATCTCCCTTTCTTGGGTTTGGGAGTTTTAGCCACGCTACGTGGGCTGCTGCCGCGTTGCAGCAAGGCTACGCCCACCGGCCACGACGTTGGACCATCAATTGCCGGCAAAAAGAAGGTTTGA

Protein sequence

MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEAPPFFVGLLWLELLLQWPLTVFNLYAIWAAKSWLHTTCLIYGVSLFTAMRASGLLLKLYLPFLGLGVLATLRGLLPRCSKATPTGHDVGPSIAGKKKV
Homology
BLAST of CmaCh16G006540 vs. ExPASy Swiss-Prot
Match: Q6DFQ5 (Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 32/111 (28.83%), Postives = 52/111 (46.85%), Query Frame = 0

Query: 1   MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEA 60
           M V  +L + + F   F H     L+  Q +LP +L+P  L+D  + Y     D+LMA  
Sbjct: 1   MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANP 60

Query: 61  PPFFVGLLWLELLLQWPLTVFNLYAIW-AAKSWLHTTCLIYGVSLFTAMRA 111
           PP+F   ++ E +LQ P      YA +     W+    ++Y   + T + A
Sbjct: 61  PPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIA 111

BLAST of CmaCh16G006540 vs. TAIR 10
Match: AT2G32380.1 (Transmembrane protein 97, predicted )

HSP 1 Score: 131.0 bits (328), Expect = 8.6e-31
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 0

Query: 1   MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEA 60
           MG   KL D+VLF+   + A+  PLI  Q  LPG +FP  +VD    Y+   GDYL+ E 
Sbjct: 1   MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEK 60

Query: 61  PPFFVGLLWLELLLQWPLTVFNLYAIWAAKSWLHTTCLIYGVSLFTAM-----------R 120
           P F VGL+W ELLL WPL++ N+YAI A KSW  TT ++YG S+ T+M           +
Sbjct: 61  PHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGK 120

Query: 121 ASGLLLKLYLPFLGLGVLATLRGLLPRCSKATPTGHDVG--PSIAGKKK 157
           AS  LL +Y+PF+G+G+LA LRGLL   S++  +G  VG  P+I  ++K
Sbjct: 121 ASEKLLMMYVPFMGVGILALLRGLL---SQSNKSGGAVGKRPAILARRK 166

BLAST of CmaCh16G006540 vs. TAIR 10
Match: AT1G05210.1 (Transmembrane protein 97, predicted )

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-30
Identity = 74/152 (48.68%), Postives = 92/152 (60.53%), Query Frame = 0

Query: 1   MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEA 60
           MG L KL D  LFV     A+  PLI  Q  LP  ++P  L D K  Y+   GDYL+ E 
Sbjct: 1   MGALGKLIDVALFVYFVSMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEK 60

Query: 61  PPFFVGLLWLELLLQWPLTVFNLYAIWAAKSWLHTTCLIYGVSLFTAM-----------R 120
           P F VGL+W ELL  WPL++ N+YAI A KSW  TTCL+YG SL T+M           +
Sbjct: 61  PHFLVGLVWHELLFLWPLSIANVYAILAGKSWFGTTCLLYGASLVTSMAAILGDMIGSGK 120

Query: 121 ASGLLLKLYLPFLGLGVLATLRGLLPRCSKAT 142
           AS  LL +Y+PF+G G+LA LRGL+ R +K T
Sbjct: 121 ASDRLLMMYVPFMGFGILAVLRGLVYRSTKNT 152

BLAST of CmaCh16G006540 vs. TAIR 10
Match: AT1G05220.1 (Transmembrane protein 97, predicted )

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-23
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEA 60
           MG L KL +  LF    + A+  PL+  Q+L PG ++P +L D K+ Y     DYL  E 
Sbjct: 1   MGALGKLINISLFFFFALMAINVPLLNGQILFPG-IYPKLLTDLKDWYSSEFNDYLFIEK 60

Query: 61  PPFFVGLLWLELLLQWPLTVFNLYAIWAAKSWLHTTCLIYGVSLFTAMRA---------- 120
           P FFVGL+W E++   PL++ N+YAI  +KSW  TT L+YG S  T+M A          
Sbjct: 61  PLFFVGLVWHEIIFLLPLSIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEK 120

Query: 121 -SGLLLKLYLPFLGLGVLATLRGLLPRCSK 140
            +  LL  YLPF+GL +LA LRGL+   +K
Sbjct: 121 VTNKLLLAYLPFVGLAILAMLRGLVTCSTK 149

BLAST of CmaCh16G006540 vs. TAIR 10
Match: AT1G05220.2 (Transmembrane protein 97, predicted )

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-23
Identity = 64/150 (42.67%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MGVLLKLFDSVLFVSLFVHAMAPPLIGAQLLLPGALFPDVLVDFKELYVRLSGDYLMAEA 60
           MG L KL +  LF    + A+  PL+  Q+L PG ++P +L D K+ Y     DYL  E 
Sbjct: 1   MGALGKLINISLFFFFALMAINVPLLNGQILFPG-IYPKLLTDLKDWYSSEFNDYLFIEK 60

Query: 61  PPFFVGLLWLELLLQWPLTVFNLYAIWAAKSWLHTTCLIYGVSLFTAMRA---------- 120
           P FFVGL+W E++   PL++ N+YAI  +KSW  TT L+YG S  T+M A          
Sbjct: 61  PLFFVGLVWHEIIFLLPLSIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEK 120

Query: 121 -SGLLLKLYLPFLGLGVLATLRGLLPRCSK 140
            +  LL  YLPF+GL +LA LRGL+   +K
Sbjct: 121 VTNKLLLAYLPFVGLAILAMLRGLVTCSTK 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6DFQ51.2e-0528.83Sigma intracellular receptor 2 OS=Xenopus tropicalis OX=8364 GN=tmem97 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G32380.18.6e-3145.56Transmembrane protein 97, predicted [more]
AT1G05210.11.5e-3048.68Transmembrane protein 97, predicted [more]
AT1G05220.16.6e-2342.67Transmembrane protein 97, predicted [more]
AT1G05220.26.6e-2342.67Transmembrane protein 97, predicted [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016964Sigma intracellular receptor 2PIRSFPIRSF031032TMP_97coord: 1..111
e-value: 5.9E-19
score: 66.2
coord: 107..143
e-value: 0.36
score: 8.3
NoneNo IPR availablePFAMPF05241EBPcoord: 41..108
e-value: 9.0E-11
score: 42.2
NoneNo IPR availablePANTHERPTHR31204SIGMA INTRACELLULAR RECEPTOR 2coord: 1..156
NoneNo IPR availablePANTHERPTHR31204:SF6SUBFAMILY NOT NAMEDcoord: 1..156
IPR033118EXPERA domainPROSITEPS51751EXPERAcoord: 8..129
score: 12.522221

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006540.1CmaCh16G006540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane