CmaCh16G006520 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	Cma_Chr16: 3391124 .. 3401627 (+)
RNA-Seq Expression	CmaCh16G006520
Synteny	CmaCh16G006520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAACGTGATTTCTTGTTGATCCTTCCTTTGCAAATATTGGAAAAGGATAAGAAGGCCAAATGCAAAGTGTTCCTTTAATTCAAATGAATTGCATTCAATTTTGAAAACGACACAAAGGGAAAAGGAAATAATCTTTGATTTTGAGTGTTCTCGTCGTGGGTCGGGTCTCACTTTGTTTCTCTTTTTCTCCCTCTCTTATCTGACCGTTCAGTTCCAGACCTTCATACCTGTTTAATGAAAAAACAGACTGGTTCTGACTATCCCCGAATCATGTTGTATGCATGAACAAACATGAAGTGTCGAAATTTTTTTTATTTTGATTCATATATTTGTCAACATTTTGTTTTTAAAATATAAATGTTAAAAATATGTAGGTTAAGAAGATTTTACCATTCTTTTTAGTTAAAATTAGTGAGAATGAATCCAAGGTAAAAAATCAAAATTATAAAAAATACTTTTTAGTAACTTAATTAAAATAATTTAAAATCAAAATTATAAAAATACTTTTTAGTAAATAAAAAAATTAATGGTATATATATTTTTTAAATTTGGAATTATTATATTGTATTTTAAATTATTCAATTTTAAATGGAAATATTTAAATCGTGTTTACCTATAGTATGTCATAATTTGAAAAAAGATATCTCAATAAATATATTATATTTTTATTTTCAAAATATCAAAAAAAATTTATTCATAAACCACACTATTTTAAAATAAAGAATTATCGGTTTATTTAATTGTCGATACAAAAAAAAAATTATAATTATATCTGGTATAAATTTTTATAATAATATTTTTAATTAATTCGAACTAAGATGATTTAAATAATATTAGTGGTAAATTTAAATATGATATGAATCTATATAATTCTCAATTTGAAAATTTATTTTATTAATAAAGTTAAAAAATCAATATGTATGAAATAAATAAAAAAAATTAAAAACACATTTTATTGTTAATTTTTTAAGAAATACATTAAAAAACTGAAATAAACCTAGAGTTTAGGGAAAAATTAGGGGGTAGAAGACGAAGTTATTGTTCATCGCCGGAGCAGTTGCTGGAGAGCCTGATTGATTGCATATTACAAGAAAAAACCTGACCTTCATCGGTTTTTATCGAGTTTGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGTAGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAAACGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTCCGGAGCCGGAAGTTGCAGAGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGATGATGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGGGAAATCGACGTTCTGTTTACTCCTTCTCTTGATATCAATACGAAAGTTAGTCTTCGTTTCTTGCTTATTCATACTATGTACCATTGTTTTTTTCCCTCTTTACATTTAATTAGTTTTGAAATTTGAACTCGACTGTCATCTATTTCCAGTTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTGAGCATTTTCTTTGATTCCTTTTTGTTCTTGAAGAATTTGAACCATACCCTTTTAATTTCAATAGGTAAGAGTTAAACCCACCACTGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGGTATCTTCTCTTATGGTTCTATTGATACTGGTAGTTCACTTTTATCAGATTTAACTTGAAAAAGAATGCTAGATTCGTAGGATTTTCCAAAAGGTGAAAAGGTGCAAGTTTTATTAAACTGAATTCGGCAACAGTTTCTAGCTGCATCTTAGTTCTTTTCGTTCTTTCTTTCCCCCTGTCGTATTAGTCTCGAGTTTCATCTCACTTGATGAACTGTTTTTCTTATCACATGATGTACTACGTTTCATCTGGTAGTAGAGTTATTTCTTTCGTGTACTATATACAAATGAGGATTGAGTTATTGGTGCTGTATTTTAGTGGATACCAACAAAAGCTTGTTTCTGGTTCAGACTTTGAAATCTTCATGGCAACCGCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGGTTGTTTCCCTATCTCGCATCTTCTGAACTTTATTCTTTTCTTATCATTGATTGTAGATGATGGGCCTTTTTTTTTATTTGTTTCTCTGGTACTTGGTTCATCTTTTAATTTTGAAACAACAAAGGTTGACCTAGTGGTTAGTAAGAGTTAAAGGGCTTAGAGAGAATAGATTCGAGCTATGGCAGTCCTACCTAGAATTTAATATTCTATGAGTCTTATTGGTATCAAAATATAGTAGGATTTGGCACGTGTCATGTGAGAATAGATGAGGTGCGCAAATTGGCCTAGAACGGTACTTGAAAGTTACATAGCCATAACTCCATCAATAAACTAAACCACCCAAAGTAACAAAATTAATATTGTAAGAGGAATAGTTACAAAACACTTATACGCAGCACAATAAGAAGCCACATTTAGCTCAACAATATCAGTTTTATCTTCCAAAGGAGCTTGTTTGCTTTAAAAAATGTCCCCACAAAATTGGCTTGACCATATATATCCTTAAATTTTTTGTCTTCTCTTAAAACTATGATTGTAAAGGAGTTGGAAAAGATATAAATCTTGGGTTCTGTTGCCATTTTTTCGATAGGGAAACAACAAATATTTTGGTCCTGTTCCTGCTGCGAGGTTTTCTTTCAAATCCTTTTTTTGTTGTTTAGTGGACCCTTTCCTTTCCTTTCCCTTCCCAGCTGCCTCACTTTTTTTGTCGCTATGAAAGACTAAAATTTCCAAGAAGGTTAATTTTTTTTTGTTTGGCAAGTGCTTCACAGTAGAGTTTGCACATTAGATTGCATTATGAGGAAACATCCTTTAGTTAGGCTACTGTTTTATTCTTTGTAGAAAAGCAGCAGGAATATTGATCACCTCATTTGAAGTTGTCTGTTTGCTTCCTTGGCTGGGGACTTTTTATAAATATTTTTGGAGATTGTTTAGCTCGATCTATTGTGGAGGAGGTGATTCGATAACCCACCCTTTTTGGAAATGGTTGTTTTCTTTTGTTGGCCAACTTTTGTGCAATTGTATTAGAATTTTTGGTGCTTAAGAGAAACAATAGAATTTTTAGAGGTCTTAGAGTTTTTGGGAGGGGTCTCTGGGCCTTGGTGTATAAGAACTTTTGTAATTACTTTTTAAGTCTTATTTTGTTTCATTGGAGCTTTTTTTTTAGTCGACTCCTCTTCTTTGTGGGTTGTTTTTGTGTATTTTCTTTTATTCTTTCTTTCTTACTCAATAATAGTTGTATTCTTTCATGATGCCTTACATTGATATCTATACCTTGGATGAACATCACACCATTTTTTGAGTCTAACGTTGTATTAAAAATGGAAACTTATGCTTGGATGTGAATTGGGTCTGTTCCTATGATAGTATCCTGTGGGCTGAGAACACAAACTAAACTTTTATTTTGTATGGGTGAATTAAGAATGTTGCACTGCTTGGATGTGAATTGGGTCTGTTCCTACGATAGTATCCTGTGGGCTGAGAACACAAACTAAACTTTTATTTTGTATGGGTGAATTAAGAATGTTGCACCCTGCAGGATCTTGTACTATTGCATTCGTAATTGATTGAATGGGAAACCTAAATTTTGTACTTTGTAAAATTGATTTTTTTTTTCTTTTCTAACTAATTAGAATGAATGCAAGAATATTATAGGTTCCTATGTATTCCCCTAATTTATATTATGATGGTTGCCAAGACATTTGTCAAATTCTAGCATAAGGACTTGTTTGTTTCTATTTCCTTTAAAAAATAAATAACTATTGCTAGTGTTTCCATGGGTTATATTGCAGCTACACCTGAATCCTGTACATACAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCTGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCTATACTAAATTACTACTGAAATATTCTCAACACAGATTTTATATTTATTTTGGTTACTGTAAAGTTATCAGTCTTTTTCTTTATAGGAAACAATTTCATTTTATTGATAAAATAAAATCATGAAATGATGAAATCCCATCCATTGGATTATAAAAAACTATTCCAATGGGCCACAAGGGTAGATAAATTATACTACAAAGGGAGCTCAATTTACAGCATGAAAGAAATAGATAAGTAATTATGAGAGATGTGATTGGAGATCTTGTTCCTTGGCTGAGAAGATGCGAGAGTTATTCTATAACCAAATAGACAGACAAAAAAACTTGGATAAAGTTGAGCCATTTTCTTTCATGAAGGAATGCCCAGTGAATATGAGAGAAGGGAGGACCCAAATATCATAAGGAAAGGCAATCTGCCACCCAAATGTCTCTAGGTTGTGATCTCAAACAAATCTAGCCAGTTTGCTCCAAATGAAAAGGCAACTGTGTCATTCCTCTTCACTTTTGCACAATATGCAGCAGCTATGAGAGATGGCAATCCTAGGAGATATTCTTTGCAGCTTTTCGTGAGTATTGAGGCATGAATGACTAAGTTCTCATATAAAAAAACTTAACCTGTTTAGGATATTTTCCATTCCAAATGGAAAGGTAAAGATCTCTTTTAAACTGCATCAATACTCATGACAGATTACTGAGAATTTGCAATGGCTGGCTCTTTCCCCCTCTATGTTTAGTTTGTGTATGGAAAGAGAGGAGAGTATAGACCATCTTTTCCTCCATCGTTATTTCCCTAAAAAGGCTGGAATTTTCTGTTTCGTACTTTTGGGCTTTATGCATGCACACTTACAATCAATTCTTTTTTAATTACCCAATTGCGTTTATTTTCAACTTTTTTTTAATTAGCTCCTTGGGCGGGGGTTCTCTCTTCCCCTGCCCCTAAGTTGTTCTTCTACTGTTTTGTCTAATACATATGTTTCTTATAAAAAGAAGATAAAGATCTCTCTTACGATGATTGCTGGCTGAGGATAAGAACTTGACAGAGATATTGTAGAGAAAACCTTATCCTTTAGACATTATCCATGGGATGGGCATATTGCACTAGCAAATATATTTGGGTAGAAAGAGATATTTCAGCGCTATGCAACATTATTATGATCGTTGATCAAGAGCTCTTAAGTACCAATTCAAATGTGCGCTGCTGTAGGTAATATATATATAGACATATATATTATTCTCCACATTTTACATCCCTTAGCAGCTGTTTAGCAATTTGAGCCCAGACATGGTAGTTTGTTGCTTCGCCAGTCAGAAGTAGCATAAAGGGAGAAGGCTATTTGGCAGAGATAACCGTATTGGAGGACTATTTATTTATTTGCAGCATACCTTATTTCTTTGAATACCACGTTTCTTAACTTTTTTTTCATAAGCTAACTTGCTGACCCTATCATTATATTGCATTAGTTCACATCTGAGGTTTCATATGTGTTCTGGTATTTATGGACTTCTCTCTTGTTTTCTTGAAACAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGGAGATGAAGAGGTAACACCATTGAACTTGAGTGCTCAATTACTACTAGTGGGCTTAAGATAGTTTTTGAGAAAAGAAAAGTATTTTTCCTCTTGAACTTTTGGAAGAGCCACTTAATTAAGTGATGCTTCTAGTAGTAGTTTAGTGCTATAAATATTCTTAGGATTTTCGAAATCATTTTTTAAATGTGTTTGGATTAAAAAAAAAGCATTTCACCTCTACATAAGTCACCTCAACCTTAGAATAGAAGTGCCTTACTATTGAATCCATCATTTTATAGTTGTCTAATTGTTTGGTTCACTTATTTTCTCTAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTTTCAATGAGCCCGTATGTGTTTTTTGCTCGTTGATGCATAAAATCTTTAATACGGTAAATTCATCGATTTAATAATATTTATTTTGAGCATTTGATTTGGTTCTACTTATTTCAGGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTAAACACATTTGCACGCTCCGGCTGTTTAATATATGTTACCGAACATTTAACTAGTCAGGCAAGTAATTTGGGAGACTTCAAATATTTACTGATGTCTTAATCCTACTGATGGACATTTCAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGTTTGTTTGTAAGATGAATACTTGTGATTTTTTTTTCCTGATTGCCATAAGAAGATATCAGTGCATGTGCACATCTACTCTATCGTCTAACTTTTATTCAGTATTAGCTGGCTGTATATTCCATGTCCATTTATGCATTCATCAACCATTTGTTATTATCATGAGATCATATTTTCAAATTGTGCTCTCTCAATTAATCAAGGGATTTTTTTTTGTCAAATATGCTTATTTATTTTTTTAGTATCTGGGTTTTTGGTCAAGATACGCCCACCTCGGCTAATCTCATAAGACAATTGCTTAACCCTACTACATTTAGTTGTCAATGAAACTCATTGTTTATTTAATCTTAAGTAGGCGGTGACCATAGTTTGAACTCATTTCTTCTATGTTTTTTACATTTTTCATTGTTCCTATGACCACAATGTCAAACCATAGTGATTATTGTCATTGCTATTTAAAAATATATAATATAACTTTTATTAAGCAGCATCACCAGAAGCATATCACGAAAAATGATTGTATTGAGCATATAAAAAAAAAAGTTGTCCAAAGTATGATGAACGAGACCAATCAATTTCAATTGCTTAAAGTGAACAGAGAGGACTGTCTAAAGCCTAAGGTTAAAATTAACCTCCACAGCTTTAAAGCATCACATCCGCTAAATAAAATCCATCCCACATTTTCATTTTGTTTTTTATTTTTTTATATGAAGTTAAAAAATATTGCAAATCCTTTACAAATTTGCAATTGGGTGATATTTACCTCCTTGCCCTCTCGATCAAAGTACAGTTTGGAATTGAAAGGGGAAGTGGGGGGAGGTGCTAATGCTTATAAGGAAGTGCATTATCTTTTTATCAGTCTTTATATCATGCTGATTCATTGTTGATGACTTATTCCGTGTTTGTTTTGTGAATAATCTTTTTCCTCCTTTCTAATAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAAAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCGCCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGGTTTGCAGGTAGGGGCCGGTTTTCTTCTTGCTTGTGCTTATCATTATGAGAGTTTTCTTGGTTGGAAAGGACTGCTACTTTCTTGAATAGTATGGCGTGGAATTTTGATGAGATTTAGGATATCATTGCCTTTTAACGTCTTTTTGTCATGCTCTTTCTATCATTTATTAACTTCAATAAATGATAGGTTTCTTTTAGATGGGAAAACATGTATTCATCTGTTCGGTACGTGTTTATAAGCACTTGTATTGTTCCTTTGAGCTGTTTTTTGGGGAAGTCTTCATTTTGTAATAGCCTCGAGTTATCTATCATGTGACATCGTAATCTATTCTTCCCGTGGTGTCATGGAGAAGATGAATCTTCATGTAGCAAAGCTGATGCGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGTTGCTGGTGAATTATATTCATGGTCAAAGTCTTTTATGTGAAAAACGATGTTTGCATTATTTTTCCATGTAAGAACACGATAAATTGGCATCTTTGTTTTTAACTTCATGCTGCACTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTTAGCCACCATGTTATTCAATCTCTCACTCATTTGAATTTCTTCCTGCATGGATAGGAAACCTTTTTAATAGATTTTGGTTCTTATGCTACCGAAATATTCTGGTTGAGGATCTTTATTGTTCAGTGATTATTTTTCTTTTGACGTGAAACATTATTGTTCAGCTTGAAATCTCTTGCATTTTCTAAAAGCGCCGTCAATCAGGATTGATTTTATGCACTTTCTAGTGACGATCTTTTATCCCAGGATTGGCTCGTACAATCATTATGAATTAAATAAATGTTTCGGCCTTCTTCACTGGTGTCAAGATATATGATTCTGCTCTTACCCTGTTGCCTTTTGTGCAGGTTATGAACGAAATTTGTGTGTCCCATGGTTCTTCTTGGGCCTTGAAGAGTGGCGATGGAAATTCGAGATGACTAGGTTCCTCTCGTGAAATTCTGAGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTATAACTTTCTTTACTCTTACTAGAAAGTATATCAAATTACCAAAAGCATAGAGAGAAAGAGAGAAGTTGTTGGTTTTCTTTGCTCTGATTGATAAAATATGCATTTTGCAAATAAATTGAATGCCATTTCCCGTGGCCCTCCATCATTTGATCCACATCCAAATTTTGACTCATAGTTATAATCCTCCATTTATCAATGATGCAAAAGCCCATCTGAGCTAATAAGATTTCAAATTATAGTAACTTTTAGAAAGAGTAAACAGTGTGAAACTGTTCATTTCGCTGTTTGATGCCAAATTACTCTACTTTCTTTATCATCAGGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATGTCGTTGTGCAACACAAAAATTTTGAAATGTACAGACAAAGGTAAATACTATCCCTCTTATAATAAGATTCAGCAGCAGCTTATGTAATGCAAACTCAAACCACTGCACAATATTAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAACATTAGTTTGACGACGCTTTTGTTTTCTTGTAGGTTAAAAGATGAAGTTAGTCTTTGAACATTGTTTATTTAGTGTTCAAATTTCAAAAAGCTTAGACTATGTTCTTAAATTTATCATGTACGCTTCATTAGATACAATTTTGATGATGATGATGATGGTGTTCGATCTGTTGTCACCAAATTCTTAGTACCTTGTTGAAGAACCAGGCTGATATAGAGACATAATAAGTTTACTCTTTTAGACCCAACCATGTAACACTCTAATTTTCTTAACCTAAAAACCATTATGCGGGTGTTTTGGGTCAATTTGATTCTAAAGATTGACGTTTACTTGAGTTTTCGG

mRNA sequence

ATGAATCAACGTGATTTCTTGTTGATCCTTCCTTTGCAAATATTGGAAAAGGATAAGAAGGCCAAATGCAAAAAAAAACCTGACCTTCATCGGTTTTTATCGAGTTTGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGTAGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAAACGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTCCGGAGCCGGAAGTTGCAGAGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGATGATGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGGGAAATCGACGTTCTGTTTACTCCTTCTCTTGATATCAATACGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTAAGAGTTAAACCCACCACTGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGACTTTGAAATCTTCATGGCAACCGCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGCTACACCTGAATCCTGTACATACAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCTGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTTTCAATGAGCCCGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAAAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCGCCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTTATGAACGAAATTTGTGTGTCCCATGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATGTCGTTGTGCAACACAAAAATTTTGAAATGTACAGACAAAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAACATTAGTTTGACGACGCTTTTGTTTTCTTGTAGGTTAAAAGATGAAGTTAGTCTTTGAACATTGTTTATTTAGTGTTCAAATTTCAAAAAGCTTAGACTATGTTCTTAAATTTATCATGTACGCTTCATTAGATACAATTTTGATGATGATGATGATGGTGTTCGATCTGTTGTCACCAAATTCTTAGTACCTTGTTGAAGAACCAGGCTGATATAGAGACATAATAAGTTTACTCTTTTAGACCCAACCATGTAACACTCTAATTTTCTTAACCTAAAAACCATTATGCGGGTGTTTTGGGTCAATTTGATTCTAAAGATTGACGTTTACTTGAGTTTTCGG

Coding sequence (CDS)

ATGAATCAACGTGATTTCTTGTTGATCCTTCCTTTGCAAATATTGGAAAAGGATAAGAAGGCCAAATGCAAAAAAAAACCTGACCTTCATCGGTTTTTATCGAGTTTGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGTAGAAACCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCACGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAAACGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTCCGGAGCCGGAAGTTGCAGAGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGATGATGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGGGAAATCGACGTTCTGTTTACTCCTTCTCTTGATATCAATACGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAGGGGCGATGTGACGAGGTAAGAGTTAAACCCACCACTGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGACTTTGAAATCTTCATGGCAACCGCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGCTACACCTGAATCCTGTACATACAGTCGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCTGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGGAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTTTCAATGAGCCCGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAAAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCGCCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGGTTTGCAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTTATGAACGAAATTTGTGTGTCCCATGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATGTCGTTGTGCAACACAAAAATTTTGAAATGTACAGACAAAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAA

Protein sequence

MNQRDFLLILPLQILEKDKKAKCKKKPDLHRFLSSLRTSTVAEASRCSFTPREERVETFRMDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVAEPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVDDDDDPMEEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHAQLKRFKAKPATRSPHSAVPNSSAGNLLWQTEHSLMSLCNTKILKCTDKGDPLSVGNELRASGVVLCFGGVFY

Homology

[Close]

BLAST of CmaCh16G006520 vs. ExPASy Swiss-Prot
Match: Q9CZT4 (DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-30
Identity = 137/504 (27.18%), Postives = 218/504 (43.25%), Query Frame = 0


Query: 165 MVDDDDDPMEEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVR 224
           M +++DDP         V++EIDV    SL    KLY+ QYP+RP    Y+        +
Sbjct: 1   MANEEDDP---------VIQEIDVYLAKSL--AEKLYLFQYPVRPASMTYDDIPHL-SAK 60

Query: 225 VKPTTGEVEVDLNVDIESNNY------------------DSKADANLQMKKQTLKSSWQP 284
           +KP   +VE+++ +D  + NY                  ++   ++  M KQT  SS   
Sbjct: 61  IKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTT 120

Query: 285 PMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLNSGGPK---RKINVRADPNVKSEEHT 344
                YA  L    +LHL P+H ++QLRPSF +L+    K   R+    A  + + E   
Sbjct: 121 SNTARYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEE 180

Query: 345 DVN------SAGGSRKQKKQTGPSTE--PKTGDEECWIPLKYYGLESDLSTRHLRSMVAQ 404
           DV       S   S + +++   S E   K   EE W+ L YYG+    S    + ++ Q
Sbjct: 181 DVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQ 240

Query: 405 KNSPM---QFSMSPHDYVDSLC-PGASSSRNKPKGPSKRF----LLSLSLEERIKKLLTE 464
            +S +   +   SP +Y+  L  P     ++KP  PS       L +L L ++IK L+  
Sbjct: 241 GSSGVENTELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKN 300

Query: 465 GPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSG--------- 524
              +   + +    P  +    +  +Q+ A  VQG WV KS  L P+D S          
Sbjct: 301 VKVMPFANLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEV 360

Query: 525 RC-ARDFVLSLFSKNP-VVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRL 584
            C  RDFV+  F+++  VV      V K   + VK FL    V R   K W F    D  
Sbjct: 361 LCRGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVR-INKGWEFLLPYDLE 420

Query: 585 FLNNYVDIVQKQEKVWRSVE---EGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHD 618
           F+  + D+VQ+Q  +W  ++   E + N  + ++       +APV    +   E++V   
Sbjct: 421 FIKKHPDVVQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVG---LVSGEQRVQTA 480

[Close]

BLAST of CmaCh16G006520 vs. ExPASy Swiss-Prot
Match: Q9NVU0 (DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-29
Identity = 132/491 (26.88%), Postives = 212/491 (43.18%), Query Frame = 0


Query: 165 MVDDDDDPMEEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVR 224
           M +++DDP         VV+EIDV    SL    KLY+ QYP+RP    Y+        +
Sbjct: 1   MANEEDDP---------VVQEIDVYLAKSL--AEKLYLFQYPVRPASMTYDDIPHL-SAK 60

Query: 225 VKPTTGEVEVDLNVDIESNNY------------------DSKADANLQMKKQTLKSSWQP 284
           +KP   +VE+++ +D  + NY                  ++   ++  M KQT  SS   
Sbjct: 61  IKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTT 120

Query: 285 PMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLNSGGPK---RKINVRADPNVKSEEHT 344
              + YA  L    +LHL P+H ++QLRPSF +L+    K   R+    A  + + E   
Sbjct: 121 SNTSRYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAED 180

Query: 345 DVN------SAGGSRKQKKQTGPSTE--PKTGDEECWIPLKYYGLESDLSTRHLRSMVAQ 404
           DV       S   S + +++   S E   K   EE W+ L YYGL    S    + ++  
Sbjct: 181 DVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCP 240

Query: 405 KNSPM---QFSMSPHDYVDSLC-PGASSSRNKPKGPSKRF----LLSLSLEERIKKLLTE 464
            +S +   +   SP +Y+  L  P     ++KP  PS       L +L L ++IK L+  
Sbjct: 241 GSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKN 300

Query: 465 GPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSG--------- 524
              +   + +    P  +    +  +Q+ A  VQG WV KS  L P+D S          
Sbjct: 301 VKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEV 360

Query: 525 RC-ARDFVLSLFSKNP-VVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRL 584
            C  RDFV+  F+++  VV      V K   + VK FL    V R   K W F    D  
Sbjct: 361 LCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFILPYDGE 420

Query: 585 FLNNYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKAS 608
           F+  + D+VQ+Q  +W  ++  +   +    + M     A   P  +   ++++   K  
Sbjct: 421 FIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTK 478

[Close]

BLAST of CmaCh16G006520 vs. ExPASy Swiss-Prot
Match: O74883 (DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc37 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-10
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 174 EEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPY-EFEGRCD-EVRVKPTTGE 233
           +E   +D VVR   V F+P L  N  L + Q+PLRP+ R Y +  G    +VRVKP TG 
Sbjct: 17  DETEEQDPVVRTYPVFFSPGLRNN--LLLNQFPLRPKNRTYSDANGEAPIDVRVKPKTGW 76

Query: 234 VEVDLNVDIESNNYDSKA----DANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPV 293
           +EVD+ +       + KA    +    ++ QTL    Q P  T+  VGL+   + H+ P+
Sbjct: 77  MEVDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKP-RTNLMVGLIRDGQFHIVPL 136

Query: 294 HTVVQLRPSFEHLNSGGPKRK 309
             + QLRPS +H+N    K K
Sbjct: 137 RGLTQLRPSMKHVNEYTQKLK 154

[Close]

BLAST of CmaCh16G006520 vs. TAIR 10
Match: AT5G49530.1 (SIN-like family protein )

HSP 1 Score: 530.0 bits (1364), Expect = 3.4e-150
Identity = 318/710 (44.79%), Postives = 434/710 (61.13%), Query Frame = 0


Query: 61  MDLDDLDEPSQVPSRTSRFAP-KTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVA 120
           MD DD D+P +V ++T RFAP +  K KPKPK E          PT  +P  P P+ +  
Sbjct: 1   MDFDDDDKPKEV-TKTRRFAPGRAGKSKPKPKPE----------PTADKPVQPPPQSQTE 60

Query: 121 EPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLE-----VEEETMVDDDDDPM- 180
                + + + + +   V  KVE  + NG  KM++++K++     +E E M +D   P+ 
Sbjct: 61  S----VSKTEHDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQ 120

Query: 181 ----EEDASEDMVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTT 240
               EE+  +D+VVREIDV F PS+D NT+LYVLQYPLRP WRPYE + RC+EVRV P+T
Sbjct: 121 EEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPST 180

Query: 241 GEVEVDLNVDIESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHT 300
            +VE+DL++D+ S NYDS  +  L M KQTLK++W+ P    YAVG+L GDKLHLNPVH 
Sbjct: 181 SQVEIDLSMDVHSKNYDS--NFGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHA 240

Query: 301 VVQLRPSFEHLNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQT-GPSTEPKTGD 360
           V QLRPS + L+S           D   K EE T+  S G S+KQ K     ST+ K  +
Sbjct: 241 VAQLRPSMQSLSS-----------DKKKKQEESTE-ESVGTSKKQNKGVQQASTDQKPIN 300

Query: 361 EECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPS 420
           EE W+ LKY+GL+S+  +R+L  M+A  NS + F+MSP  Y++ LC G SS  ++ K   
Sbjct: 301 EETWVSLKYHGLQSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETL 360

Query: 421 KRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKS 480
           KR LLSL L+ER++KLL EG P+ R+S LKHYAP++  ++F+ ALQ+Y + VQGLW  K+
Sbjct: 361 KRVLLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKT 420

Query: 481 SFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVP-KSLRDKVKHFLNWFGVERPAFKDW 540
             LL  DG    ARD+VLSLFS+N  +  S++      ++  ++  L  F  ER   KDW
Sbjct: 421 R-LLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDW 480

Query: 541 RFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFR---GSVKNMSHANAAPVKPEMVP 600
           +FKE TD  F+ +Y +IV++Q+  W    E + +      G  +     N       +  
Sbjct: 481 KFKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTV 540

Query: 601 KPE-KQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRD 660
           KPE    + DK  +  +         M +E ++ALPKAL+K+FQTHKVC ++ ICQGLRD
Sbjct: 541 KPEVPTTLSDKGGSSKNTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRD 600

Query: 661 LAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLR 720
           LAVS S  PKAD+ MAV  A  VDA   EL+ +I  VAT IHG YV  SSP+HPEYD LR
Sbjct: 601 LAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLR 660

Query: 721 KVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHA 754
           +VVI LL G  P   L KA+V  A + +L R I +NEY KVM+EIC +++
Sbjct: 661 EVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEICETNS 680

The following BLAST results are available for this feature:

BLAST of CmaCh16G006520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CZT4	7.5e-30	27.18	DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e ...	[more]
Q9NVU0	4.9e-29	26.88	DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E P...	[more]
O74883	3.0e-10	36.17	DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of CmaCh16G006520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49530.1	3.4e-150	44.79	SIN-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 179..559 e-value: 1.0E-88 score: 298.5
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 174..552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 591..612
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..329

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006520.1	CmaCh16G006520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity