CmaCh16G006440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GATA transcription factor
Location	Cma_Chr16: 3349745 .. 3351028 (+)
RNA-Seq Expression	CmaCh16G006440
Synteny	CmaCh16G006440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACAGGCTTATCGGACCATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAACTCTGTTTTCGTGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTCGTCGACCAACTCCTCGATTTCTCCAATGATGACCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCATGACGACTCTGTTTCTCTTTCCGGTCAAGAAATTCATCCGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGTTGTTTTTGTTTCCTTTCCCCTGTTTTTTGAACAGAGTTGCGGGGGTTATTTTAATTTCTGTAACATTGATGAAGGCTTTGCTATTTTTAACAGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGCAACCGGGCAACGGTGGTTCTATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAAGCAAACGAACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAGCGTCGGAGCTCAGCCTCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAGCATACCGTAGTTGAGGCGGGCCACCGGAGGAGGAGGAAGAGAAGAGTAAAGTTTAGGTAAGGAACCGGATTTATCGAACCCGGTTCAATTAATCCGAGTTAGTATACATTTTCCGCCCTCCTCGGTGCGCCGTAGGTTTGTAGCAATGTACGTACGTAACCGTCTAGAGAAAAAAAAAA

mRNA sequence

TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACAGGCTTATCGGACCATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAACTCTGTTTTCGTGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTCGTCGACCAACTCCTCGATTTCTCCAATGATGACCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCATGACGACTCTGTTTCTCTTTCCGGTCAAGAAATTCATCCGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGCAACCGGGCAACGGTGGTTCTATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAAGCAAACGAACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAGCGTCGGAGCTCAGCCTCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAGCATACCGTAGTTGAGGCGGGCCACCGGAGGAGGAGGAAGAGAAGAGTAAAGTTTAGGTAAGGAACCGGATTTATCGAACCCGGTTCAATTAATCCGAGTTAGTATACATTTTCCGCCCTCCTCGGTGCGCCGTAGGTTTGTAGCAATGTACGTACGTAACCGTCTAGAGAAAAAAAAAA

Coding sequence (CDS)

ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAACTCTGTTTTCGTGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTCGTCGACCAACTCCTCGATTTCTCCAATGATGACCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCATGACGACTCTGTTTCTCTTTCCGGTCAAGAAATTCATCCGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGCAACCGGGCAACGGTGGTTCTATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAAGCAAACGAACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAGCGTCGGAGCTCAGCCTCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG

Protein sequence

MECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK

Homology

[Close]

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot
Match: Q9FH57 (GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-64
Identity = 150/292 (51.37%), Postives = 187/292 (64.04%), Query Frame = 0


Query: 28  QNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHD----HDDSVSLSGQEIHPNSIVS-- 87
           QN  + DDF VD LLD SNDD F  ++T  + +H+      +  +  G  +  +S  S  
Sbjct: 33  QNGFSVDDFSVDDLLDLSNDDVFADEETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGC 92

Query: 88  -DHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQ 147
            D  SLP+ EL++P DDLA+LEWLSHFVEDSF+ +S      G +     ++  A +   
Sbjct: 93  DDFGSLPTSELSLPADDLANLEWLSHFVEDSFTEYS------GPNLTGTPTEKPAWLTGD 152

Query: 148 PGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPAS 207
             +  +    E CFK+P+P KARSKR R G +VW L S S +  SSS +T SSSSS P+S
Sbjct: 153 RKHPVTAVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGST-SSSSSGPSS 212

Query: 208 PWLILPDRFEPEI-------PKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTG 267
           PW    +  EP +       PKK  +R + S         QP R+CSHCGVQKTPQWR G
Sbjct: 213 PWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAG 272

Query: 268 PLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKE 306
           P+GAKT+CNACGVR+KSGRLLPEYRPACSPTFSSELHSNHHRKV+EMRRKKE
Sbjct: 273 PMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317

[Close]

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot
Match: Q9SD38 (GATA transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=GATA6 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.4e-55
Identity = 146/289 (50.52%), Postives = 180/289 (62.28%), Query Frame = 0


Query: 34  DDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQE-IHPNSIVSDHPSLPSGELT 93
           DDF VD LLDFS +++       DE E        +S +  +H ++  S      SG L+
Sbjct: 26  DDFSVDDLLDFSKEEEDDDVLVEDEAELKVQRKRGVSDENTLHRSNDFSTADFHTSG-LS 85

Query: 94  VPVDDLADLEWLSHFVED-SFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPPE 153
           VP+DD+A+LEWLS+FV+D SF+ +SA  P+     L  + +      K+          E
Sbjct: 86  VPMDDIAELEWLSNFVDDSSFTPYSA--PTNKPVWLTGNRRHLVQPVKE----------E 145

Query: 154 NCFKTPIP-VKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASP-WLILPDRF 213
            CFK+  P VK R KR RTG RVW   S SLT+SSSSSTTSSSSS  P+SP WL      
Sbjct: 146 TCFKSQHPAVKTRPKRARTGVRVWSHGSQSLTDSSSSSTTSSSSSPRPSSPLWLASGQFL 205

Query: 214 EPEIPKKKPRRKSLSEKPKTSVGAQ-PPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRF 273
           +  + K + ++K      +T    Q   R+C HCGVQKTPQWR GPLGAKT+CNACGVR+
Sbjct: 206 DEPMTKTQKKKKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRY 265

Query: 274 KSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQ 318
           KSGRLLPEYRPACSPTFSSELHSNHH KV+EMRRKKE +  AE   L Q
Sbjct: 266 KSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKETSDGAEETGLNQ 301

[Close]

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot
Match: O65515 (GATA transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=GATA7 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-42
Identity = 123/282 (43.62%), Postives = 152/282 (53.90%), Query Frame = 0


Query: 35  DFFVDQLLDFSNDDQFVQDQTPD--EDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSGELT 94
           DF VD LLD SN D  ++  +    EDE + +   S S Q    ++ +S    L S    
Sbjct: 10  DFSVDDLLDLSNADTSLESSSSQRKEDEQEREKFKSFSDQ----STRLSPPEDLLSFPGD 69

Query: 95  VPVDDLADLEWLSHFVEDSFSG--FSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPP 154
            PV DL DLEWLS+FVEDSFS    S+ FP   ++                    S+   
Sbjct: 70  APVGDLEDLEWLSNFVEDSFSESYISSDFPVNPVA--------------------SVEVR 129

Query: 155 ENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFE 214
             C    +PVK RSKR RT GR+W + SPS   S++ +                      
Sbjct: 130 RQC----VPVKPRSKRRRTNGRIWSMESPSPLLSTAVARR-------------------- 189

Query: 215 PEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKS 274
               KK+ R+K  +         Q  R CSHCGVQKTPQWR GPLGAKT+CNACGVRFKS
Sbjct: 190 ----KKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKS 238

Query: 275 GRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAEL 313
           GRLLPEYRPACSPTF++E+HSN HRKVLE+R  K +A PA +
Sbjct: 250 GRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK-VADPARV 238

[Close]

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot
Match: P69781 (GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-36
Identity = 123/287 (42.86%), Postives = 155/287 (54.01%), Query Frame = 0


Query: 33  SDDFFVDQLL-DFSNDDQFVQDQTPDEDEHDH-DDSVSLSGQEIHP-NSIVSDHPSLPSG 92
           + DF VD LL DFSNDD    D   D        DS + S  ++   +  V D  S  SG
Sbjct: 11  TSDFAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSF-SG 70

Query: 93  ELTVPVDDLAD-LEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSIS 152
           +L +P DDLAD LEWLS+ V++S S          + S  KS  D  +    P N  S S
Sbjct: 71  DLCIPSDDLADELEWLSNIVDESLS--PEDVHKLELISGFKSRPDPKSDTGSPENPNSSS 130

Query: 153 PPENCFKT--PIPVKARSKRTRTGGRVWC---LASPSLTESSSSSTTSSSSS---SSPAS 212
           P    F T   +P KARSKR+R     W    L   +  +S  +  T  SS    S P S
Sbjct: 131 P---IFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTS 190

Query: 213 PWLILPDRFEPEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTV 272
           P L++    + +      RRK     P++  G    RRC HC   KTPQWRTGP+G KT+
Sbjct: 191 PPLLMAPLGKKQAVDGGHRRKKDVSSPES--GGAEERRCLHCATDKTPQWRTGPMGPKTL 250

Query: 273 CNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIA 308
           CNACGVR+KSGRL+PEYRPA SPTF    HSN HRKV+E+RR+KE++
Sbjct: 251 CNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMS 289

[Close]

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot
Match: O82632 (GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.0e-36
Identity = 117/288 (40.62%), Postives = 152/288 (52.78%), Query Frame = 0


Query: 34  DDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSG--EL 93
           D F VD LLDFSNDD  V     D+  +   DS +LS   +  +S  S   +  +G  +L
Sbjct: 16  DSFVVDDLLDFSNDDGEV-----DDGLNTLPDSSTLSTGTLTDSSNSSSLFTDGTGFSDL 75

Query: 94  TVPVDDLADLEWLSHFVEDSFSG--------FSA-SFPSAGISSLVKSSKDSAAVDKQPG 153
            +P DD+A+LEWLS+FVE+SF+G        FS    P    S+L    K    +D Q  
Sbjct: 76  YIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLTHLIKPEPELDHQ-- 135

Query: 154 NGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPW 213
               I   E+     +P KARSKR+R+    W     SL +S  ++              
Sbjct: 136 ---FIDIDES--NVAVPAKARSKRSRSAASTWASRLLSLADSDETN-------------- 195

Query: 214 LILPDRFEPEIPKKKPRR---KSLSEKPKTSVG-AQPPRRCSHCGVQKTPQWRTGPLGAK 273
                      PKKK RR   +  +       G +   RRC HC  +KTPQWRTGP+G K
Sbjct: 196 -----------PKKKQRRVKEQDFAGDMDVDCGESGGGRRCLHCATEKTPQWRTGPMGPK 255

Query: 274 TVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEI 307
           T+CNACGVR+KSGRL+PEYRPA SPTF    HSN HRKV+E+RR+KE+
Sbjct: 256 TLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM 266

[Close]

BLAST of CmaCh16G006440 vs. TAIR 10
Match: AT5G66320.1 (GATA transcription factor 5 )

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-65
Identity = 150/292 (51.37%), Postives = 187/292 (64.04%), Query Frame = 0


Query: 28  QNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHD----HDDSVSLSGQEIHPNSIVS-- 87
           QN  + DDF VD LLD SNDD F  ++T  + +H+      +  +  G  +  +S  S  
Sbjct: 33  QNGFSVDDFSVDDLLDLSNDDVFADEETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGC 92

Query: 88  -DHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQ 147
            D  SLP+ EL++P DDLA+LEWLSHFVEDSF+ +S      G +     ++  A +   
Sbjct: 93  DDFGSLPTSELSLPADDLANLEWLSHFVEDSFTEYS------GPNLTGTPTEKPAWLTGD 152

Query: 148 PGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPAS 207
             +  +    E CFK+P+P KARSKR R G +VW L S S +  SSS +T SSSSS P+S
Sbjct: 153 RKHPVTAVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGST-SSSSSGPSS 212

Query: 208 PWLILPDRFEPEI-------PKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTG 267
           PW    +  EP +       PKK  +R + S         QP R+CSHCGVQKTPQWR G
Sbjct: 213 PWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAG 272

Query: 268 PLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKE 306
           P+GAKT+CNACGVR+KSGRLLPEYRPACSPTFSSELHSNHHRKV+EMRRKKE
Sbjct: 273 PMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317

[Close]

BLAST of CmaCh16G006440 vs. TAIR 10
Match: AT5G66320.2 (GATA transcription factor 5 )

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-65
Identity = 150/292 (51.37%), Postives = 187/292 (64.04%), Query Frame = 0


Query: 28  QNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHD----HDDSVSLSGQEIHPNSIVS-- 87
           QN  + DDF VD LLD SNDD F  ++T  + +H+      +  +  G  +  +S  S  
Sbjct: 33  QNGFSVDDFSVDDLLDLSNDDVFADEETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGC 92

Query: 88  -DHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQ 147
            D  SLP+ EL++P DDLA+LEWLSHFVEDSF+ +S      G +     ++  A +   
Sbjct: 93  DDFGSLPTSELSLPADDLANLEWLSHFVEDSFTEYS------GPNLTGTPTEKPAWLTGD 152

Query: 148 PGNGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPAS 207
             +  +    E CFK+P+P KARSKR R G +VW L S S +  SSS +T SSSSS P+S
Sbjct: 153 RKHPVTAVTEETCFKSPVPAKARSKRNRNGLKVWSLGSSSSSGPSSSGST-SSSSSGPSS 212

Query: 208 PWLILPDRFEPEI-------PKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTG 267
           PW    +  EP +       PKK  +R + S         QP R+CSHCGVQKTPQWR G
Sbjct: 213 PWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAG 272

Query: 268 PLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKE 306
           P+GAKT+CNACGVR+KSGRLLPEYRPACSPTFSSELHSNHHRKV+EMRRKKE
Sbjct: 273 PMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317

[Close]

BLAST of CmaCh16G006440 vs. TAIR 10
Match: AT3G51080.1 (GATA transcription factor 6 )

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-56
Identity = 146/289 (50.52%), Postives = 180/289 (62.28%), Query Frame = 0


Query: 34  DDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGQE-IHPNSIVSDHPSLPSGELT 93
           DDF VD LLDFS +++       DE E        +S +  +H ++  S      SG L+
Sbjct: 26  DDFSVDDLLDFSKEEEDDDVLVEDEAELKVQRKRGVSDENTLHRSNDFSTADFHTSG-LS 85

Query: 94  VPVDDLADLEWLSHFVED-SFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPPE 153
           VP+DD+A+LEWLS+FV+D SF+ +SA  P+     L  + +      K+          E
Sbjct: 86  VPMDDIAELEWLSNFVDDSSFTPYSA--PTNKPVWLTGNRRHLVQPVKE----------E 145

Query: 154 NCFKTPIP-VKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASP-WLILPDRF 213
            CFK+  P VK R KR RTG RVW   S SLT+SSSSSTTSSSSS  P+SP WL      
Sbjct: 146 TCFKSQHPAVKTRPKRARTGVRVWSHGSQSLTDSSSSSTTSSSSSPRPSSPLWLASGQFL 205

Query: 214 EPEIPKKKPRRKSLSEKPKTSVGAQ-PPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRF 273
           +  + K + ++K      +T    Q   R+C HCGVQKTPQWR GPLGAKT+CNACGVR+
Sbjct: 206 DEPMTKTQKKKKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRY 265

Query: 274 KSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQ 318
           KSGRLLPEYRPACSPTFSSELHSNHH KV+EMRRKKE +  AE   L Q
Sbjct: 266 KSGRLLPEYRPACSPTFSSELHSNHHSKVIEMRRKKETSDGAEETGLNQ 301

[Close]

BLAST of CmaCh16G006440 vs. TAIR 10
Match: AT4G36240.1 (GATA transcription factor 7 )

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-43
Identity = 123/282 (43.62%), Postives = 152/282 (53.90%), Query Frame = 0


Query: 35  DFFVDQLLDFSNDDQFVQDQTPD--EDEHDHDDSVSLSGQEIHPNSIVSDHPSLPSGELT 94
           DF VD LLD SN D  ++  +    EDE + +   S S Q    ++ +S    L S    
Sbjct: 10  DFSVDDLLDLSNADTSLESSSSQRKEDEQEREKFKSFSDQ----STRLSPPEDLLSFPGD 69

Query: 95  VPVDDLADLEWLSHFVEDSFSG--FSASFPSAGISSLVKSSKDSAAVDKQPGNGGSISPP 154
            PV DL DLEWLS+FVEDSFS    S+ FP   ++                    S+   
Sbjct: 70  APVGDLEDLEWLSNFVEDSFSESYISSDFPVNPVA--------------------SVEVR 129

Query: 155 ENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFE 214
             C    +PVK RSKR RT GR+W + SPS   S++ +                      
Sbjct: 130 RQC----VPVKPRSKRRRTNGRIWSMESPSPLLSTAVARR-------------------- 189

Query: 215 PEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKS 274
               KK+ R+K  +         Q  R CSHCGVQKTPQWR GPLGAKT+CNACGVRFKS
Sbjct: 190 ----KKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKS 238

Query: 275 GRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAEL 313
           GRLLPEYRPACSPTF++E+HSN HRKVLE+R  K +A PA +
Sbjct: 250 GRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK-VADPARV 238

[Close]

BLAST of CmaCh16G006440 vs. TAIR 10
Match: AT5G25830.1 (GATA transcription factor 12 )

HSP 1 Score: 155.2 bits (391), Expect = 8.7e-38
Identity = 123/287 (42.86%), Postives = 155/287 (54.01%), Query Frame = 0


Query: 33  SDDFFVDQLL-DFSNDDQFVQDQTPDEDEHDH-DDSVSLSGQEIHP-NSIVSDHPSLPSG 92
           + DF VD LL DFSNDD    D   D        DS + S  ++   +  V D  S  SG
Sbjct: 11  TSDFAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGTSF-SG 70

Query: 93  ELTVPVDDLAD-LEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKQPGNGGSIS 152
           +L +P DDLAD LEWLS+ V++S S          + S  KS  D  +    P N  S S
Sbjct: 71  DLCIPSDDLADELEWLSNIVDESLS--PEDVHKLELISGFKSRPDPKSDTGSPENPNSSS 130

Query: 153 PPENCFKT--PIPVKARSKRTRTGGRVWC---LASPSLTESSSSSTTSSSSS---SSPAS 212
           P    F T   +P KARSKR+R     W    L   +  +S  +  T  SS    S P S
Sbjct: 131 P---IFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYDSPFTGETILSSQQHLSPPTS 190

Query: 213 PWLILPDRFEPEIPKKKPRRKSLSEKPKTSVGAQPPRRCSHCGVQKTPQWRTGPLGAKTV 272
           P L++    + +      RRK     P++  G    RRC HC   KTPQWRTGP+G KT+
Sbjct: 191 PPLLMAPLGKKQAVDGGHRRKKDVSSPES--GGAEERRCLHCATDKTPQWRTGPMGPKTL 250

Query: 273 CNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIA 308
           CNACGVR+KSGRL+PEYRPA SPTF    HSN HRKV+E+RR+KE++
Sbjct: 251 CNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKEMS 289

The following BLAST results are available for this feature:

BLAST of CmaCh16G006440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH57	3.1e-64	51.37	GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1	[more]
Q9SD38	3.4e-55	50.52	GATA transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=GATA6 PE=2 SV=1	[more]
O65515	2.5e-42	43.62	GATA transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=GATA7 PE=2 SV=1	[more]
P69781	1.2e-36	42.86	GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1	[more]
O82632	6.0e-36	40.63	GATA transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=GATA9 PE=2 SV=1	[more]

BLAST of CmaCh16G006440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66320.1	2.2e-65	51.37	GATA transcription factor 5	[more]
AT5G66320.2	2.2e-65	51.37	GATA transcription factor 5	[more]
AT3G51080.1	2.4e-56	50.52	GATA transcription factor 6	[more]
AT4G36240.1	1.8e-43	43.62	GATA transcription factor 7	[more]
AT5G25830.1	8.7e-38	42.86	GATA transcription factor 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 233..287 e-value: 6.8E-16 score: 68.8
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 239..273 e-value: 1.4E-15 score: 56.6
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 239..264
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 233..269 score: 11.648429
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 238..286 e-value: 1.63857E-13 score: 62.3902
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 231..306 e-value: 2.3E-15 score: 58.0
IPR016679	Transcription factor, GATA, plant	PIRSF	PIRSF016992	Txn_fac_GATA_plant	coord: 8..318 e-value: 4.9E-85 score: 283.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..246
None	No IPR available	PANTHER	PTHR45658:SF88	GATA TRANSCRIPTION FACTOR	coord: 1..307
None	No IPR available	PANTHER	PTHR45658	GATA TRANSCRIPTION FACTOR	coord: 1..307
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 233..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006440.1	CmaCh16G006440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding