CmaCh16G006320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	bZIP transcription factor 44-like
Location	Cma_Chr16: 3262905 .. 3263273 (+)
RNA-Seq Expression	CmaCh16G006320
Synteny	CmaCh16G006320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATCGAATCGAGAATCTGCTCGCCGATCTAGGATGCGAAAACAGAAGCAGCTCGACGATCTGACGTCTCAGGCCAGCCTACTCAAAACAGAGAATGAGCAAATCGCTGTCAATTTCAATTTCACCACCCAACTTTACCTGAATCTGGAGGCGGAGAACTCGGTTCTCCAAGCCCAGATGGCGGAGCTCCGCCATAGATTGGACTCATTAAACGAAATCATAAGCTTTATAAAGTCGAGTACTAGAAATCTGTATGATTCTGAGGAACATGATGAAGTTTCTGAGATTGATGGGGTTGTTGATTCTTGGGGGATTCCCTTTCTGAACCAGCCAATCATGGCGGCTGGTGATATGTTTATGTGTTGA

mRNA sequence

ATGATATCGAATCGAGAATCTGCTCGCCGATCTAGGATGCGAAAACAGAAGCAGCTCGACGATCTGACGTCTCAGGCCAGCCTACTCAAAACAGAGAATGAGCAAATCGCTGTCAATTTCAATTTCACCACCCAACTTTACCTGAATCTGGAGGCGGAGAACTCGGTTCTCCAAGCCCAGATGGCGGAGCTCCGCCATAGATTGGACTCATTAAACGAAATCATAAGCTTTATAAAGTCGAGTACTAGAAATCTGTATGATTCTGAGGAACATGATGAAGTTTCTGAGATTGATGGGGTTGTTGATTCTTGGGGGATTCCCTTTCTGAACCAGCCAATCATGGCGGCTGGTGATATGTTTATGTGTTGA

Coding sequence (CDS)

ATGATATCGAATCGAGAATCTGCTCGCCGATCTAGGATGCGAAAACAGAAGCAGCTCGACGATCTGACGTCTCAGGCCAGCCTACTCAAAACAGAGAATGAGCAAATCGCTGTCAATTTCAATTTCACCACCCAACTTTACCTGAATCTGGAGGCGGAGAACTCGGTTCTCCAAGCCCAGATGGCGGAGCTCCGCCATAGATTGGACTCATTAAACGAAATCATAAGCTTTATAAAGTCGAGTACTAGAAATCTGTATGATTCTGAGGAACATGATGAAGTTTCTGAGATTGATGGGGTTGTTGATTCTTGGGGGATTCCCTTTCTGAACCAGCCAATCATGGCGGCTGGTGATATGTTTATGTGTTGA

Protein sequence

MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQMAELRHRLDSLNEIISFIKSSTRNLYDSEEHDEVSEIDGVVDSWGIPFLNQPIMAAGDMFMC

Homology

[Close]

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot
Match: C0Z2L5 (bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 3   SNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQMA 62
           SNRESARRSRMRKQK LDDLT+Q + L+ EN QI      TTQ Y+ +EAEN +L+AQ+ 
Sbjct: 48  SNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEAENDILRAQVL 107

Query: 63  ELRHRLDSLNEIISFIKSSTR--NLYDSEEHDEVSEIDGVVDSWGIPFLNQPIMA----A 122
           EL HRL SLNEI+ F++SS+    +   +   +    DGV++   + F NQPIMA    A
Sbjct: 108 ELNHRLQSLNEIVDFVESSSSGFGMETGQGLFDGGLFDGVMNPMNLGFYNQPIMASASTA 167

[Close]

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot
Match: O65683 (bZIP transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=BZIP11 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-21
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           M+SNRESARRSRM+KQK LDDLT+Q + LK EN +I  + + TTQ YL +EAENSVL+AQ
Sbjct: 32  MLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVTSVSITTQHYLTVEAENSVLRAQ 91

Query: 61  MAELRHRLDSLNEIISFIKSSTRNLYD-----SEEHDEVSEIDGVVDSWGIPF-LNQPIM 120
           + EL HRL SLN+II F+ SS  N  +     S     +   D  V+   + + +NQP+M
Sbjct: 92  LDELNHRLQSLNDIIEFLDSSNNNNNNNMGMCSNPLVGLECDDFFVNQMNMSYIMNQPLM 151

Query: 121 AAGDMFM 122
           A+ D  M
Sbjct: 152 ASSDALM 158

[Close]

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot
Match: Q9SI15 (bZIP transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=BZIP2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           M+SNRESARRSRMRKQK +DDLT+Q + L  +N QI  +   T+QLY+ ++AENSVL AQ
Sbjct: 36  MLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQ 95

Query: 61  MAELRHRLDSLNEIISFIKSS---------------TRNLYDSEEHDEVSEIDGVVDSWG 116
           M EL  RL SLNEI+  ++S+                R +     +D+++ +  V    G
Sbjct: 96  MEELSTRLQSLNEIVDLVQSNGAGFGVDQIDGCGFDDRTVGIDGYYDDMNMMSNVNHWGG 155

[Close]

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot
Match: Q9LZP8 (bZIP transcription factor 53 OS=Arabidopsis thaliana OX=3702 GN=BZIP53 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           MISNRESARRSRMRKQKQL DL ++ +LLK +N +I    +  ++ Y+ +E++N+VL+AQ
Sbjct: 30  MISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESKNNVLRAQ 89

Query: 61  MAELRHRLDSLNEIISFIKSSTRNLYDSEEHDEVSEIDGVVDSWGIPFLNQPIMAAGDMF 120
            +EL  RL SLN ++  ++  +    D  E  E      + + W +P   QPI A+ DMF
Sbjct: 90  ASELTDRLRSLNSVLEMVEEISGQALDIPEIPE-----SMQNPWQMPCPMQPIRASADMF 146

Query: 121 MC 123
            C
Sbjct: 150 DC 146

[Close]

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot
Match: P24068 (Ocs element-binding factor 1 OS=Zea mays OX=4577 GN=OBF1 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-11
Identity = 40/107 (37.38%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 2   ISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQM 61
           +SNRESARRSR+RKQ+ LD+L  + + L+ +N ++A         Y  +E EN+VL+A+ 
Sbjct: 32  LSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARA 91

Query: 62  AELRHRLDSLNEIISFIKSSTRNLYDSEEHDEVSEIDGVVDSWGIPF 109
           AEL  RL S+NE++  ++  +    D +E  E+   D ++  W +P+
Sbjct: 92  AELGDRLRSVNEVLRLVEEFSGVAMDIQE--EMPADDPLLRPWQLPY 136

[Close]

BLAST of CmaCh16G006320 vs. TAIR 10
Match: AT1G75390.1 (basic leucine-zipper 44 )

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-24
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 3   SNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQMA 62
           SNRESARRSRMRKQK LDDLT+Q + L+ EN QI      TTQ Y+ +EAEN +L+AQ+ 
Sbjct: 48  SNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEAENDILRAQVL 107

Query: 63  ELRHRLDSLNEIISFIKSSTR--NLYDSEEHDEVSEIDGVVDSWGIPFLNQPIMA----A 122
           EL HRL SLNEI+ F++SS+    +   +   +    DGV++   + F NQPIMA    A
Sbjct: 108 ELNHRLQSLNEIVDFVESSSSGFGMETGQGLFDGGLFDGVMNPMNLGFYNQPIMASASTA 167

[Close]

BLAST of CmaCh16G006320 vs. TAIR 10
Match: AT4G34590.1 (G-box binding factor 6 )

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-22
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           M+SNRESARRSRM+KQK LDDLT+Q + LK EN +I  + + TTQ YL +EAENSVL+AQ
Sbjct: 32  MLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVTSVSITTQHYLTVEAENSVLRAQ 91

Query: 61  MAELRHRLDSLNEIISFIKSSTRNLYD-----SEEHDEVSEIDGVVDSWGIPF-LNQPIM 120
           + EL HRL SLN+II F+ SS  N  +     S     +   D  V+   + + +NQP+M
Sbjct: 92  LDELNHRLQSLNDIIEFLDSSNNNNNNNMGMCSNPLVGLECDDFFVNQMNMSYIMNQPLM 151

Query: 121 AAGDMFM 122
           A+ D  M
Sbjct: 152 ASSDALM 158

[Close]

BLAST of CmaCh16G006320 vs. TAIR 10
Match: AT2G18160.1 (basic leucine-zipper 2 )

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-19
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           M+SNRESARRSRMRKQK +DDLT+Q + L  +N QI  +   T+QLY+ ++AENSVL AQ
Sbjct: 36  MLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQAENSVLTAQ 95

Query: 61  MAELRHRLDSLNEIISFIKSS---------------TRNLYDSEEHDEVSEIDGVVDSWG 116
           M EL  RL SLNEI+  ++S+                R +     +D+++ +  V    G
Sbjct: 96  MEELSTRLQSLNEIVDLVQSNGAGFGVDQIDGCGFDDRTVGIDGYYDDMNMMSNVNHWGG 155

[Close]

BLAST of CmaCh16G006320 vs. TAIR 10
Match: AT3G62420.1 (basic region/leucine zipper motif 53 )

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-18
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 1   MISNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 60
           MISNRESARRSRMRKQKQL DL ++ +LLK +N +I    +  ++ Y+ +E++N+VL+AQ
Sbjct: 30  MISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEMESKNNVLRAQ 89

Query: 61  MAELRHRLDSLNEIISFIKSSTRNLYDSEEHDEVSEIDGVVDSWGIPFLNQPIMAAGDMF 120
            +EL  RL SLN ++  ++  +    D  E  E      + + W +P   QPI A+ DMF
Sbjct: 90  ASELTDRLRSLNSVLEMVEEISGQALDIPEIPE-----SMQNPWQMPCPMQPIRASADMF 146

Query: 121 MC 123
            C
Sbjct: 150 DC 146

[Close]

BLAST of CmaCh16G006320 vs. TAIR 10
Match: AT1G75390.2 (basic leucine-zipper 44 )

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-12
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 3   SNRESARRSRMRKQKQLDDLTSQASLLKTENEQIAVNFNFTTQLYLNLEAENSVLQAQ 61
           SNRESARRSRMRKQK LDDLT+Q + L+ EN QI      TTQ Y+ +EAEN +L+AQ
Sbjct: 48  SNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEAENDILRAQ 105

The following BLAST results are available for this feature:

BLAST of CmaCh16G006320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0Z2L5	1.7e-23	51.59	bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1	[more]
O65683	3.6e-21	50.39	bZIP transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=BZIP11 PE=1 SV=1	[more]
Q9SI15	2.2e-18	44.62	bZIP transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=BZIP2 PE=1 SV=1	[more]
Q9LZP8	1.4e-17	43.44	bZIP transcription factor 53 OS=Arabidopsis thaliana OX=3702 GN=BZIP53 PE=1 SV=1	[more]
P24068	3.4e-11	37.38	Ocs element-binding factor 1 OS=Zea mays OX=4577 GN=OBF1 PE=2 SV=2	[more]

BLAST of CmaCh16G006320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75390.1	1.2e-24	51.59	basic leucine-zipper 44	[more]
AT4G34590.1	2.6e-22	50.39	G-box binding factor 6	[more]
AT2G18160.1	1.5e-19	44.62	basic leucine-zipper 2	[more]
AT3G62420.1	1.0e-18	43.44	basic region/leucine zipper motif 53	[more]
AT1G75390.2	9.1e-12	63.79	basic leucine-zipper 44	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 47..74
None	No IPR available	COILS	Coil	Coil	coord: 5..32
None	No IPR available	GENE3D	1.20.5.170		coord: 1..48 e-value: 1.9E-8 score: 36.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR45764	BZIP TRANSCRIPTION FACTOR 44	coord: 1..121
None	No IPR available	PANTHER	PTHR45764:SF58	BZIP TRANSCRIPTION FACTOR BZIP124	coord: 1..121
None	No IPR available	CDD	cd14702	bZIP_plant_GBF1	coord: 1..47 e-value: 1.38869E-16 score: 66.0182
None	No IPR available	SUPERFAMILY	57959	Leucine zipper domain	coord: 1..49
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 1..56 e-value: 1.6E-5 score: 34.4
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 1..36 e-value: 1.4E-9 score: 37.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006320.1	CmaCh16G006320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding