CmaCh16G006200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G006200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	late embryogenesis abundant protein D-29-like
Location	Cma_Chr16: 3202210 .. 3203177 (+)
RNA-Seq Expression	CmaCh16G006200
Synteny	CmaCh16G006200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGTAATTTTACGTATTATTAAAATCTCCGAAGCAACAAGGTTTTTTGTTTTGTTAATAATGGTGGCGTTATATTTGTTTGGTCAGGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGCCCTTTATTTTAAATAAATCGAGATTTTGATTTTGATTTTTTTTTTTCCTTTTTAGATTGTGTTGAATAAAATATTCCCTTTGTGATTTTGATTTTAATTTGTGGGCTTGTGAGTGTTATCCATCTTGATTTAAAGTGATACTAAAATGGAAATGGAAAGCATTGGTTACTTAACGTCGAGATGCTTTCGATGATTAGTGC

mRNA sequence

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGCCCTTTATTTTAAATAAATCGAGATTTTGATTTTGATTTTTTTTTTTCCTTTTTAGATTGTGTTGAATAAAATATTCCCTTTGTGATTTTGATTTTAATTTGTGGGCTTGTGAGTGTTATCCATCTTGATTTAAAGTGATACTAAAATGGAAATGGAAAGCATTGGTTACTTAACGTCGAGATGCTTTCGATGATTAGTGC

Coding sequence (CDS)

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

Protein sequence

MARRMKSLAAVLWVVVILLVAEKSRGWAEETKDNVAEAASNAKDNVAEAASSAKESVAEAAEKAKLGEKAEAVKEGASEAYSNTKESVAEAAEKAKLGEKAEAVKKGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKETAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPAEKEKTTEL

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh16G006200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G006200 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 20..156 e-value: 7.7E-7 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..75
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 24..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006200.1	CmaCh16G006200.1	mRNA