CmaCh16G006020 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G006020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionAT-rich interactive domain-containing protein 2
LocationCma_Chr16: 3107263 .. 3108848 (-)
RNA-Seq ExpressionCmaCh16G006020
SyntenyCmaCh16G006020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTAGAACTTGCAGACTTAGCTTCAAACCAAAACCCTCAGGCCCTAACCATCTTCATCCAAGAGCCCCTAATTGGTGTTCGTTTCGTTGAGTCGCCCCCAACTTCAATCATTTATAATCCGATCAAGTTCCGGCCGTCGTGTATTTGACTGTCCCACGCCACTGCCACCCCTTTTGTCTTGGTTCCATCTTCATCGCTGCTATCTTCGTCTTCATAATGGGTTGCAGGAAGAAAGGAGTCCCAGATTCCCAAAACGAGGTAGAGCCTTTTGAATTTTCATAGCAAAGGGTTAATCTATCTTTTGCGTTAATCTTGGAGGTTTCTGTTTGTTTCGTATGTATTTTTTAACAAGAAAGAAGAGTTCCGTGCGAATTTGCTTTGATTTTAAAGTGGGTTTGTGTTCATGGGGAGATGGCATGTTTCATCTAATGCTTCCATTTTAGATTGCAATAAAGATGTAGATCCTAATCCTAGTAATGGCTGTTGCATTGCTTCGGATTGTTTGGTAGAGGGGACTTATGCAAATGTTGATTATGATGATTGCAAGGCGAGAATTAGATGCTATTTTGAGAAAATTCTTTGGGTTTTTTTAAAGGAAATTGGTCGTAGAGGATTTGTTAGGCCACTGCCTGCGTTAATAGGTGAAGGGGGAGCTTTGGATTTGTTTGAATTGTTCTTGGTAGTAAGAGATAAAGGAGGTTCTCAAGTGGTTTCAGAGAAGAAACTATGGTCTTCAGTGGTTGTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCGGTGAAATTGATTTATTCCAAGTACTTAAGTGATCTAGAGAAATGGCTTATGGTGAGATGTGGAGACACAAAACTGGAAAATGGGAGCTCTGATTATTGCTACAAGAAAAGTTCTCCATTTTTGTCGGAACTCGGGGCAAAGATTAACGGTATGTTGTATGGTGTGCCGAGACAAAATAGCATATATGATGAATGTTTTGGATTCAAATCTAACAAACAGAATGGGAACGTTAATGTTGCTGCCGCTGCAGTGGAGAAGGAAATAAAATTCTCTGAAATAAAGAAGAAAGAACACGATCTCCATGGGGATGTTACACCAATTCAACAAGATTGTACAGAGACGCATCCAATCCATGTTATTGAAGATGGTCAAAGTTTGGATGCTGTTAATGTTGAAGCTGAAATAGAATCTCTTGGGAAATATCGAGAATCGTTATTACGAATGCTGAAGTGGGTGAGAAAGACTGCGAAGCATCCTGAAGATCCATTAAATGGTACAATACTGGGGGCATCAAGGTGGAAAGGTTACTCGAGCGATGATGCATTATGGCTTCAAGTAATCAGTGCAAAGGATGCTCTTCTAATTAGGAAGGGTGTTGACAAAATCGCTGAGAAACGTCTTTTAATACAGGTAGATTTCACCCACTTATTCTGATTGTAAGCCAGTTCTCTCTCTCTCTCCCCCTTCCCCTTTTTTCCTTGACCGATCGACATACTTGCTTTCTTGCTTTGGACTGCAATTATGCGCAAACTGACGTGTGCAGGTATTACGATCTTTGGCTTTCTTTTTCAGGATAGAGTCTTCTGA

mRNA sequence

TCTTAGAACTTGCAGACTTAGCTTCAAACCAAAACCCTCAGGCCCTAACCATCTTCATCCAAGAGCCCCTAATTGGTGTTCGTTTCGTTGAGTCGCCCCCAACTTCAATCATTTATAATCCGATCAAGTTCCGGCCGTCGTGTATTTGACTGTCCCACGCCACTGCCACCCCTTTTGTCTTGGTTCCATCTTCATCGCTGCTATCTTCGTCTTCATAATGGGTTGCAGGAAGAAAGGAGTCCCAGATTCCCAAAACGAGGTAGAGCCTTTTGAATTTTCATAGCAAAGGGTTAATCTATCTTTTGCGTTAATCTTGGAGGTTTCTGTTTGTTTCGTATGTATTTTTTAACAAGAAAGAAGAGTTCCGTGCGAATTTGCTTTGATTTTAAAGTGGGTTTGTGTTCATGGGGAGATGGCATGTTTCATCTAATGCTTCCATTTTAGATTGCAATAAAGATGTAGATCCTAATCCTAGTAATGGCTGTTGCATTGCTTCGGATTGTTTGGTAGAGGGGACTTATGCAAATGTTGATTATGATGATTGCAAGGCGAGAATTAGATGCTATTTTGAGAAAATTCTTTGGGTTTTTTTAAAGGAAATTGGTCGTAGAGGATTTGTTAGGCCACTGCCTGCGTTAATAGGTGAAGGGGGAGCTTTGGATTTGTTTGAATTGTTCTTGGTAGTAAGAGATAAAGGAGGTTCTCAAGTGGTTTCAGAGAAGAAACTATGGTCTTCAGTGGTTGTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCGGTGAAATTGATTTATTCCAAGTACTTAAGTGATCTAGAGAAATGGCTTATGGTGAGATGTGGAGACACAAAACTGGAAAATGGGAGCTCTGATTATTGCTACAAGAAAAGTTCTCCATTTTTGTCGGAACTCGGGGCAAAGATTAACGGTATGTTGTATGGTGTGCCGAGACAAAATAGCATATATGATGAATGTTTTGGATTCAAATCTAACAAACAGAATGGGAACGTTAATGTTGCTGCCGCTGCAGTGGAGAAGGAAATAAAATTCTCTGAAATAAAGAAGAAAGAACACGATCTCCATGGGGATGTTACACCAATTCAACAAGATTGTACAGAGACGCATCCAATCCATGTTATTGAAGATGGTCAAAGTTTGGATGCTGTTAATGTTGAAGCTGAAATAGAATCTCTTGGGAAATATCGAGAATCGTTATTACGAATGCTGAAGTGGGTGAGAAAGACTGCGAAGCATCCTGAAGATCCATTAAATGGTACAATACTGGGGGCATCAAGGTGGAAAGGTTACTCGAGCGATGATGCATTATGGCTTCAAGTAATCAGTGCAAAGGATGCTCTTCTAATTAGGAAGGGTGTTGACAAAATCGCTGAGAAACGTCTTTTAATACAGGATAGAGTCTTCTGA

Coding sequence (CDS)

ATGGGGAGATGGCATGTTTCATCTAATGCTTCCATTTTAGATTGCAATAAAGATGTAGATCCTAATCCTAGTAATGGCTGTTGCATTGCTTCGGATTGTTTGGTAGAGGGGACTTATGCAAATGTTGATTATGATGATTGCAAGGCGAGAATTAGATGCTATTTTGAGAAAATTCTTTGGGTTTTTTTAAAGGAAATTGGTCGTAGAGGATTTGTTAGGCCACTGCCTGCGTTAATAGGTGAAGGGGGAGCTTTGGATTTGTTTGAATTGTTCTTGGTAGTAAGAGATAAAGGAGGTTCTCAAGTGGTTTCAGAGAAGAAACTATGGTCTTCAGTGGTTGTGGAATTAGGTTTGGATCTTGGGCTTTCGGCTTCGGTGAAATTGATTTATTCCAAGTACTTAAGTGATCTAGAGAAATGGCTTATGGTGAGATGTGGAGACACAAAACTGGAAAATGGGAGCTCTGATTATTGCTACAAGAAAAGTTCTCCATTTTTGTCGGAACTCGGGGCAAAGATTAACGGTATGTTGTATGGTGTGCCGAGACAAAATAGCATATATGATGAATGTTTTGGATTCAAATCTAACAAACAGAATGGGAACGTTAATGTTGCTGCCGCTGCAGTGGAGAAGGAAATAAAATTCTCTGAAATAAAGAAGAAAGAACACGATCTCCATGGGGATGTTACACCAATTCAACAAGATTGTACAGAGACGCATCCAATCCATGTTATTGAAGATGGTCAAAGTTTGGATGCTGTTAATGTTGAAGCTGAAATAGAATCTCTTGGGAAATATCGAGAATCGTTATTACGAATGCTGAAGTGGGTGAGAAAGACTGCGAAGCATCCTGAAGATCCATTAAATGGTACAATACTGGGGGCATCAAGGTGGAAAGGTTACTCGAGCGATGATGCATTATGGCTTCAAGTAATCAGTGCAAAGGATGCTCTTCTAATTAGGAAGGGTGTTGACAAAATCGCTGAGAAACGTCTTTTAATACAGGATAGAGTCTTCTGA

Protein sequence

MGRWHVSSNASILDCNKDVDPNPSNGCCIASDCLVEGTYANVDYDDCKARIRCYFEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVSEKKLWSSVVVELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDYCYKKSSPFLSELGAKINGMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAVEKEIKFSEIKKKEHDLHGDVTPIQQDCTETHPIHVIEDGQSLDAVNVEAEIESLGKYRESLLRMLKWVRKTAKHPEDPLNGTILGASRWKGYSSDDALWLQVISAKDALLIRKGVDKIAEKRLLIQDRVF
Homology
BLAST of CmaCh16G006020 vs. ExPASy Swiss-Prot
Match: Q9LDD4 (AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=ARID2 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-29
Identity = 98/281 (34.88%), Postives = 144/281 (51.25%), Query Frame = 0

Query: 45  DDCKARIRCYFEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVS 104
           D+C+ R+R  F++ L VFL+E    G ++PLPA+IG+G  +DLF+LF++VR++ G   VS
Sbjct: 20  DECEERLRRLFDQALLVFLEE---EGSIKPLPAVIGDGKNVDLFKLFVLVREREGFDTVS 79

Query: 105 EKKLWSSVVVELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDY--CYKKS 164
            K+LW  V  +LG D  L  S+ LIY KYL+ +EKW +        +N  S+   CY   
Sbjct: 80  RKRLWEVVAEKLGFDCSLVPSLILIYLKYLNRMEKWAVEESRIVNWDNKDSEKKGCY--- 139

Query: 165 SPFLSELGAKINGMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAVEKEI-KFSEIKKK 224
           S  L ELG   NG         S+ D     K  K+N  V      +E+   +F   +K+
Sbjct: 140 SGMLHELG---NGF-------KSLLD---NGKCQKRNRAVAFGCNHMEESCSEFDRSRKR 199

Query: 225 EHDLHGDVTPIQQDCTETHPIHVIEDGQSLDAVNVEAEIESLGKYRESLLRMLKWVRKTA 284
             +   D   +           VI +   + AV       SL K R+ L  MLKW+   A
Sbjct: 200 FRESDDDDKGVGLSSV------VIREETVVCAVEEGLSDFSLEK-RDDLPGMLKWLALVA 259

Query: 285 KHPEDPLNGTILGASRWKGYSSDDALWLQVISAKDALLIRK 323
             P DP  G I  +S+WK Y+ +   WLQV  AK++LL+++
Sbjct: 260 TSPHDPAIGVIPHSSKWKQYNGNKC-WLQVARAKNSLLVQR 273

BLAST of CmaCh16G006020 vs. ExPASy Swiss-Prot
Match: Q84JT7 (AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=ARID1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-20
Identity = 88/264 (33.33%), Postives = 115/264 (43.56%), Query Frame = 0

Query: 55  FEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVSEKKLWSSVVV 114
           F  +L  FL E        PLPA+ GEG  +DLF LFL V  KGG   VSE   W  VV 
Sbjct: 49  FRPLLDSFLAEFCSADGFLPLPAMTGEGRTVDLFNLFLNVTHKGGFDAVSENGSWDEVVQ 108

Query: 115 ELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDYCYKKSSPFLSELGAKIN 174
           E GL+   SAS KLIY KYL    +WL       ++  G +D    + S     L A++N
Sbjct: 109 ESGLESYDSASAKLIYVKYLDAFGRWL------NRVVAGDTDVSSVELSGISDALVARLN 168

Query: 175 GMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAVEKEIK-FSEIKKKEHDLH--GDVTP 234
           G L  V +           K   + G     A  +  E+K F    K+ +D H  G  + 
Sbjct: 169 GFLSEVKK-----------KYELRKGR---PAKELGAELKWFISKTKRRYDKHHVGKESA 228

Query: 235 IQQDCTETHPIHVIED--GQSLDAVNVEAEIESLGK-YRESLLRMLKWVRKTAKHPEDPL 294
                 E     + E    Q +   +V  E  S GK  RE  L  LKW+   AK P DP 
Sbjct: 229 SNDAVKEFQGSKLAERRLEQIMILESVTQECSSPGKRKRECPLETLKWLSDVAKDPCDPS 288

Query: 295 NGTILGASRWKGYSSDDALWLQVI 313
            G +   S W  Y S++  W Q++
Sbjct: 289 LGIVPDRSEWVSYGSEEP-WKQLL 291

BLAST of CmaCh16G006020 vs. TAIR 10
Match: AT4G11400.1 (ARID/BRIGHT DNA-binding domain;ELM2 domain protein )

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-30
Identity = 98/281 (34.88%), Postives = 144/281 (51.25%), Query Frame = 0

Query: 45  DDCKARIRCYFEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVS 104
           D+C+ R+R  F++ L VFL+E    G ++PLPA+IG+G  +DLF+LF++VR++ G   VS
Sbjct: 20  DECEERLRRLFDQALLVFLEE---EGSIKPLPAVIGDGKNVDLFKLFVLVREREGFDTVS 79

Query: 105 EKKLWSSVVVELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDY--CYKKS 164
            K+LW  V  +LG D  L  S+ LIY KYL+ +EKW +        +N  S+   CY   
Sbjct: 80  RKRLWEVVAEKLGFDCSLVPSLILIYLKYLNRMEKWAVEESRIVNWDNKDSEKKGCY--- 139

Query: 165 SPFLSELGAKINGMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAVEKEI-KFSEIKKK 224
           S  L ELG   NG         S+ D     K  K+N  V      +E+   +F   +K+
Sbjct: 140 SGMLHELG---NGF-------KSLLD---NGKCQKRNRAVAFGCNHMEESCSEFDRSRKR 199

Query: 225 EHDLHGDVTPIQQDCTETHPIHVIEDGQSLDAVNVEAEIESLGKYRESLLRMLKWVRKTA 284
             +   D   +           VI +   + AV       SL K R+ L  MLKW+   A
Sbjct: 200 FRESDDDDKGVGLSSV------VIREETVVCAVEEGLSDFSLEK-RDDLPGMLKWLALVA 259

Query: 285 KHPEDPLNGTILGASRWKGYSSDDALWLQVISAKDALLIRK 323
             P DP  G I  +S+WK Y+ +   WLQV  AK++LL+++
Sbjct: 260 TSPHDPAIGVIPHSSKWKQYNGNKC-WLQVARAKNSLLVQR 273

BLAST of CmaCh16G006020 vs. TAIR 10
Match: AT2G46040.1 (ARID/BRIGHT DNA-binding domain;ELM2 domain protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-21
Identity = 88/264 (33.33%), Postives = 115/264 (43.56%), Query Frame = 0

Query: 55  FEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVSEKKLWSSVVV 114
           F  +L  FL E        PLPA+ GEG  +DLF LFL V  KGG   VSE   W  VV 
Sbjct: 49  FRPLLDSFLAEFCSADGFLPLPAMTGEGRTVDLFNLFLNVTHKGGFDAVSENGSWDEVVQ 108

Query: 115 ELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDYCYKKSSPFLSELGAKIN 174
           E GL+   SAS KLIY KYL    +WL       ++  G +D    + S     L A++N
Sbjct: 109 ESGLESYDSASAKLIYVKYLDAFGRWL------NRVVAGDTDVSSVELSGISDALVARLN 168

Query: 175 GMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAVEKEIK-FSEIKKKEHDLH--GDVTP 234
           G L  V +           K   + G     A  +  E+K F    K+ +D H  G  + 
Sbjct: 169 GFLSEVKK-----------KYELRKGR---PAKELGAELKWFISKTKRRYDKHHVGKESA 228

Query: 235 IQQDCTETHPIHVIED--GQSLDAVNVEAEIESLGK-YRESLLRMLKWVRKTAKHPEDPL 294
                 E     + E    Q +   +V  E  S GK  RE  L  LKW+   AK P DP 
Sbjct: 229 SNDAVKEFQGSKLAERRLEQIMILESVTQECSSPGKRKRECPLETLKWLSDVAKDPCDPS 288

Query: 295 NGTILGASRWKGYSSDDALWLQVI 313
            G +   S W  Y S++  W Q++
Sbjct: 289 LGIVPDRSEWVSYGSEEP-WKQLL 291

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LDD42.0e-2934.88AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 ... [more]
Q84JT73.8e-2033.33AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
AT4G11400.11.4e-3034.88ARID/BRIGHT DNA-binding domain;ELM2 domain protein [more]
AT2G46040.12.7e-2133.33ARID/BRIGHT DNA-binding domain;ELM2 domain protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01014ARID_2coord: 46..138
e-value: 3.1E-6
score: 36.7
NoneNo IPR availablePANTHERPTHR46410:SF2AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2coord: 1..325
NoneNo IPR availablePANTHERPTHR46410AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2coord: 1..325
NoneNo IPR availableCDDcd16100ARIDcoord: 55..138
e-value: 9.86073E-15
score: 66.9976
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 49..143
e-value: 2.2E-11
score: 53.9
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 69..138
e-value: 3.4E-8
score: 34.1
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 49..142
score: 17.33604
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 44..149
e-value: 9.6E-14
score: 52.8
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 50..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006020.1CmaCh16G006020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding