CmaCh16G005930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G005930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Rpr2 domain-containing protein
Location	Cma_Chr16: 3062802 .. 3066564 (+)
RNA-Seq Expression	CmaCh16G005930
Synteny	CmaCh16G005930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTTCTTCGCGCCGTTCGCTTCGTCTGGGTTTCCCGTTTCCGCCTTTGTCTCCGATTGTCACTTTTTCAGGCTTTCTTCTTCGCGCCGTTCGCTTCGTCCTTCTCTCTCTCTCACAAGAGTTTGTTCTTCGTCAAGGAATTATGTTGTAAGCTCATAAGTAGATTGAGCTGAATTTCTGTTCTTGACATGGCGAAGAGGAAGGGAAATACGAAGAAAGGAGCGTCTAACCCCACATCCGGTCCGCAAGATTCGATCACTATTAGACAGGAAATCACTGGGAAATTCAAACCCAAAGTCTCTAACAATGTCAAAACTTATTTGAATCATTTGGAAAACCTAGCGACTTGGGCTAGTGGGAAAGCCTCTATACCTTCATTGGCTGCTTTCTTTGGGCAGCGCCTCGCTACTGCAGCGGAGTCCTTGGCGGTCGCTCCCGACGCTTCTTTGTTTACCTGCCAGAGGTCCGTATGTTTTCTGCCGTTTACGTTCGTTTAGCCTTTGTTGTTTTCGTAGTGTTTATACATGGGTAAGTCCATGAAGATTGACTGTATTTGGGATGTGGAGTTTGTGTTTAGATTTTCTGATTAATTCTAAATGGCACTAATCTGATGTAAACGACATTTGAATATCGAGATTTGACGCTCTTTATTCGGGAAATTTTGTTTAACTGCAAATTATGATGTGGAAGGGATAGGGTAAGGTTCTTAGAATTATGGCTATATTGTGAATGACTTTAGGGGTTCTGTTGTGCAATGTACTAGCAGTTTGTGGACGCTTTGGCTCTTCTGGCTTGTTATCACATACTTAGGTTTTCATATTTTGTCCTGGAGTTTGTATTGTAGAAAGGTTGGGGGTGTAAGCTTGTGAATTGTACTATCTTATTTGGGCATATGCCCTTTGGTGACAATCAGATAACCAAAGAGGGGCTTAAGTTTTGGGAACCCATGAAGGAAAAAGTCTTAATCAAGCTTCATAAATGGAGGTAATCATCCAAAGAGGGATGCTAGACTTTGTGTGTCGTAGTCCTAGTAAAATTGCCTACCTTTTTTATGTGCATCCTGTGATGCCGAGGAAAATGAGGAACTTTCTTTGGGATGGTTCTTTTGAGAGAAAGCGGAGCAATCTGGTGAATTGGAAGGCAGTATCCTTACCTTGTTAAATGAAAGATTCAGAATTGGAAACTTGAGACGAGGCAATGAAGCCCTTATCGAAAACTGGGTTTTGTATTGCTAATGGGAACTTGGCTTAATCAAGCACAAAATAGTGCATAGAGTTTGGAGAGGATGCAAGAAGGAGTGAGCCATGCACACACTGGAATATAACGACTAAGAGAAATCGTTTGAATGAAGAATTGAAGAGTTCCATGCTATTTTGAGACTGCTGGAAAACAGGGTTATTGGTGCTGGAGTGGATGAAATAAGCTGGAATTTTTGTAGCTCTGGTGATCTCAGTCAAATCTCTTAGCTTTGTCAGACAGAGTTCATGAGAGGTATAGAAATAGAGCTTTCAGAGGTAGCGTAAAAAAGAACATGCCACAAAAAGATCAAAGCGTTAGAGTGAATAGCCTGCCTAAGTGGTCTTTTTTTTTTTTTTTTTAGGACGTTACAATAAAAACGTCCTATGATGATCTTGAATCTGCATATGCTTATTATCCTAGGAAGAGTATAAAGGAACCCACTTTTCTTCCATTTCTCATTTGGCGATTGAATTGTTATAAAATTTTTGGATACTTCGGGGTTTTTCATTGATCTTTGAAAGCTTACATATCCCTTCTACTAATGGGGTCCGTCTCTGAATGGAAAAACCAGGAATGGCCAATGCAATCAAATCTGTTCTTTGGAGCCTGTGGATTGAGAAGAAAAAAGGAAGCATTTAACATCAAGGCTAAAGACTGGCTTGAGGTGTATGAGTTTGTTTAGTCTCATTGTGTGAAATCCCACATCATGGGAAACAAAACATTTCTTATAAGAGTGTGGAAACTTCTCTCTAGCAGTCTCGTTTTAAAAACCTTGAGGGAAGCCCAAAAGGGAAAGACCAAAGAGGGCAATATTTGCCTAGCGGTGGACTTGTGCTGTTACAAATAGTATCAGAGCTAGATACTGGGAAGTGTGCCAGTGAGGACGCTGGCCCCTGAGGGGGGTGGATTGTTAGATCCCATATTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACACGTTTTAAAAACCTTGAGGGAAGCCCGAAAGAGAAAGACCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGGCTGTTACAAATGATATCAGAGTTAAACACCAAGTCATGTGCCAGCGAGGACGCTGACTTCCAAAGGGGTAGATTGTGAGATCTCACATTGGTTGGGGAGGGGAACAAATATTCCTTATAAGGGTGTGGAAACCTCTACCTAGCATACGTGTTTTAAAAACCTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAGAGGACAATATTTACTAGCGGTGGGCTTGGGCTGTTACACATTCTTATATTTCTTTAGATAGTGGGTTCAACAACTCTATTCCCCTTGTAGCTGATAATAATTGAGAGGTGGGTTTTTGTAGTAACTTCAACTAACACCTTAGCTATGATGACAGAATTCTCTTCTTTCTCCTGTGACCTTCCATGGAACTCATAATCAAAAAATGTTTGCACGTATCTCATTAGACAAGCCTGAGCATTAAAATATGCTCATTGACGCTTATTGTTAAATTATTACCATTACTTGGGAAAAAGAAACCTACTGATGTTTTAATTCAATGAATGGAGCGGGCAATCGACTCGAACAATATAGCAATTTCATGTTAAGGACTATTATCATGTCACATTTGAATGTTGTCTTGGCATCTTACTTGATTCTTCTTTGGCTACAAAGCTAGCCAATCTTACCTGCTCCATTATATTGCATTCAGGTGTGAAACAATACTTCAACCTGGCTCTAACTGCTCTATACGAATAGAGAAGAATAACGCCAAGAGACGTCGGAGACAGAAGAAATGTAGTAATTCGAGACAGAACAATGTGGCGTATTATTGCCACCACTGCTCGTGTAGGAACATAAAGAGAGGAACTCCCAAAGGCCATATGAAAGTGCTTTACGACGCAGCGTTTGAAAGAAGGGTGAAGCCTGTGGATGTCAAGGATGGTAAAGAATGTGAGACATCAGCAGTGGAGAGGCCAACTGAGATTCTTACCATTGATGCTCCTAAAATTCCTGATGCTTCTGCAATTCCTCCAACTGGGGACATCACTGCTCTTGATAACCCTGCAATTCAGCTTCAAACCAAGGGCATTCTTAATATTAATTCTCCAGCAACTCCATCCACCCTGAGCGTAACGACTTTATTGAAATCGCAGAAACGGGAAATGACGACATTATCTGAGAAACATATAGGACATGATATTAGAACAGACGAGGAGAAGAAAACTGGGGCTGTTCCTACTGTTGATGCACCCGCCACCCCTTCCACCTCGACTGGAGTGACTCTGTTGGATTCGAAGAAGAGAAAGAGGAACAAGCCGTCGTCTAAGAATCAAACCGAACCCAGAAGTTGCTCTGCTCCGACAGCAGATGGGGATAGAAGTGAAGGCACATCCAAAAGGAATCGTAAAAGAAAATCATGGACAAGTTTGAAGGAAGTTGCTCGGACGAATGAACAGAGTGGTAAACAAAAAAACATGGCTGAATTGGCAATTCCATTCTCCTTATATTAA

mRNA sequence

ATTTGTTCTTCGCGCCGTTCGCTTCGTCTGGGTTTCCCGTTTCCGCCTTTGTCTCCGATTGTCACTTTTTCAGGCTTTCTTCTTCGCGCCGTTCGCTTCGTCCTTCTCTCTCTCTCACAAGAGTTTGTTCTTCGTCAAGGAATTATGTTGTAAGCTCATAAGTAGATTGAGCTGAATTTCTGTTCTTGACATGGCGAAGAGGAAGGGAAATACGAAGAAAGGAGCGTCTAACCCCACATCCGGTCCGCAAGATTCGATCACTATTAGACAGGAAATCACTGGGAAATTCAAACCCAAAGTCTCTAACAATGTCAAAACTTATTTGAATCATTTGGAAAACCTAGCGACTTGGGCTAGTGGGAAAGCCTCTATACCTTCATTGGCTGCTTTCTTTGGGCAGCGCCTCGCTACTGCAGCGGAGTCCTTGGCGGTCGCTCCCGACGCTTCTTTGTTTACCTGCCAGAGGTGTGAAACAATACTTCAACCTGGCTCTAACTGCTCTATACGAATAGAGAAGAATAACGCCAAGAGACGTCGGAGACAGAAGAAATGTAGTAATTCGAGACAGAACAATGTGGCGTATTATTGCCACCACTGCTCGTGTAGGAACATAAAGAGAGGAACTCCCAAAGGCCATATGAAAGTGCTTTACGACGCAGCGTTTGAAAGAAGGGTGAAGCCTGTGGATGTCAAGGATGGTAAAGAATGTGAGACATCAGCAGTGGAGAGGCCAACTGAGATTCTTACCATTGATGCTCCTAAAATTCCTGATGCTTCTGCAATTCCTCCAACTGGGGACATCACTGCTCTTGATAACCCTGCAATTCAGCTTCAAACCAAGGGCATTCTTAATATTAATTCTCCAGCAACTCCATCCACCCTGAGCGTAACGACTTTATTGAAATCGCAGAAACGGGAAATGACGACATTATCTGAGAAACATATAGGACATGATATTAGAACAGACGAGGAGAAGAAAACTGGGGCTGTTCCTACTGTTGATGCACCCGCCACCCCTTCCACCTCGACTGGAGTGACTCTGTTGGATTCGAAGAAGAGAAAGAGGAACAAGCCGTCGTCTAAGAATCAAACCGAACCCAGAAGTTGCTCTGCTCCGACAGCAGATGGGGATAGAAGTGAAGGCACATCCAAAAGGAATCGTAAAAGAAAATCATGGACAAGTTTGAAGGAAGTTGCTCGGACGAATGAACAGAGTGGTAAACAAAAAAACATGGCTGAATTGGCAATTCCATTCTCCTTATATTAA

Coding sequence (CDS)

ATGGCGAAGAGGAAGGGAAATACGAAGAAAGGAGCGTCTAACCCCACATCCGGTCCGCAAGATTCGATCACTATTAGACAGGAAATCACTGGGAAATTCAAACCCAAAGTCTCTAACAATGTCAAAACTTATTTGAATCATTTGGAAAACCTAGCGACTTGGGCTAGTGGGAAAGCCTCTATACCTTCATTGGCTGCTTTCTTTGGGCAGCGCCTCGCTACTGCAGCGGAGTCCTTGGCGGTCGCTCCCGACGCTTCTTTGTTTACCTGCCAGAGGTGTGAAACAATACTTCAACCTGGCTCTAACTGCTCTATACGAATAGAGAAGAATAACGCCAAGAGACGTCGGAGACAGAAGAAATGTAGTAATTCGAGACAGAACAATGTGGCGTATTATTGCCACCACTGCTCGTGTAGGAACATAAAGAGAGGAACTCCCAAAGGCCATATGAAAGTGCTTTACGACGCAGCGTTTGAAAGAAGGGTGAAGCCTGTGGATGTCAAGGATGGTAAAGAATGTGAGACATCAGCAGTGGAGAGGCCAACTGAGATTCTTACCATTGATGCTCCTAAAATTCCTGATGCTTCTGCAATTCCTCCAACTGGGGACATCACTGCTCTTGATAACCCTGCAATTCAGCTTCAAACCAAGGGCATTCTTAATATTAATTCTCCAGCAACTCCATCCACCCTGAGCGTAACGACTTTATTGAAATCGCAGAAACGGGAAATGACGACATTATCTGAGAAACATATAGGACATGATATTAGAACAGACGAGGAGAAGAAAACTGGGGCTGTTCCTACTGTTGATGCACCCGCCACCCCTTCCACCTCGACTGGAGTGACTCTGTTGGATTCGAAGAAGAGAAAGAGGAACAAGCCGTCGTCTAAGAATCAAACCGAACCCAGAAGTTGCTCTGCTCCGACAGCAGATGGGGATAGAAGTGAAGGCACATCCAAAAGGAATCGTAAAAGAAAATCATGGACAAGTTTGAAGGAAGTTGCTCGGACGAATGAACAGAGTGGTAAACAAAAAAACATGGCTGAATTGGCAATTCCATTCTCCTTATATTAA

Protein sequence

MAKRKGNTKKGASNPTSGPQDSITIRQEITGKFKPKVSNNVKTYLNHLENLATWASGKASIPSLAAFFGQRLATAAESLAVAPDASLFTCQRCETILQPGSNCSIRIEKNNAKRRRRQKKCSNSRQNNVAYYCHHCSCRNIKRGTPKGHMKVLYDAAFERRVKPVDVKDGKECETSAVERPTEILTIDAPKIPDASAIPPTGDITALDNPAIQLQTKGILNINSPATPSTLSVTTLLKSQKREMTTLSEKHIGHDIRTDEEKKTGAVPTVDAPATPSTSTGVTLLDSKKRKRNKPSSKNQTEPRSCSAPTADGDRSEGTSKRNRKRKSWTSLKEVARTNEQSGKQKNMAELAIPFSLY

Homology

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BLAST of CmaCh16G005930 vs. TAIR 10
Match: AT5G41270.1 (CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-26
Identity = 102/326 (31.29%), Postives = 140/326 (42.94%), Query Frame = 0


Query: 40  NVKTYL--NHLENLATWAS-GKASIPSLAAFFGQRLATAAESLAVAPDASLFTCQRCETI 99
           N+K+ L   HL+NLA W+S G   IPSLA+  G+RLA   ES  +  D  L +CQRCETI
Sbjct: 19  NLKSVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTESTGITTDPDLVSCQRCETI 78

Query: 100 LQPGSNCSIRIEKNNAKRRRRQKKCSNSR-----QNNVAYYCHHCSCRNIKRGTPKGHMK 159
           L+PG NC++RIEK +A  ++++ +C  S      QNNV Y+C+ CS RN+KRGT KG MK
Sbjct: 79  LKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHRNLKRGTAKGQMK 138

Query: 160 VLYDAAFERRVKPVDVKDGKECETSAVERPTEILTIDAPKIPDASAIPPTGDITALDNPA 219
            LY        KP   +  +                  PKI     +P       L +P 
Sbjct: 139 ELYP------FKPKTARSSR------------------PKIKKEMTMPQEIQSNMLSSP- 198

Query: 220 IQLQTKGILNINSPATPSTLSVTTLLKSQKREMTTLSEKHIGHDIRTDEEKKTGAVPTVD 279
                                                E+ +   +   EEK  G  P   
Sbjct: 199 -------------------------------------ERSVKDQV---EEKSVGDTP--- 258

Query: 280 APATPSTSTGVTLLDSKKRKRNKPSSKNQTEPRSCSAPTADGDRSEGTSKRNRKRKSWTS 339
                     + L   + R+  KP SK  +EP+S    T  G      S + +++  WTS
Sbjct: 259 --------KPMMLTLERDRRIRKPKSKKPSEPQSVPEKTVGG------SNKRKRKSPWTS 258

Query: 340 LKEVARTNEQSGKQKNMAELAIPFSL 358
           +KE+A TN    K        IPF L
Sbjct: 319 MKEIAETN----KSSKAGNFKIPFLL 258

The following BLAST results are available for this feature:

BLAST of CmaCh16G005930 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G005930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41270.1	1.0e-26	31.29	CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007175	Ribonuclease P subunit, Rpr2/Snm1/Rpp21	PFAM	PF04032	Rpr2	coord: 45..136 e-value: 1.6E-10 score: 41.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..266
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..333
None	No IPR available	PANTHER	PTHR36072	OS01G0541600 PROTEIN	coord: 1..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005930.1	CmaCh16G005930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034470	ncRNA processing
biological_process	GO:0006396	RNA processing
cellular_component	GO:1902494	catalytic complex
cellular_component	GO:1990904	ribonucleoprotein complex