CmaCh16G005810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G005810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location	Cma_Chr16: 3002703 .. 3006411 (+)
RNA-Seq Expression	CmaCh16G005810
Synteny	CmaCh16G005810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCATGTAATAAGGCGTCGATGGGACCCCGTACGGCCGTCCCTATGCACCTCGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGTTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCCCAGAAGAAATCTGTGTTGTTTTTTTGTCCTCTTCGCTGCCTTTCGTCTGTGTTGATCCGGACATGATCTTCACAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCTGATGGTAATTTCTTTGGTTCTTGGTTGTTCTTCTCTTTTTTGTTCTTGTTGGTTGCTCTGCTGCTGAAGAAATCGGGAAATTTTTACCAAATTAGTTGTGTGTATTTTTTTGCTTTGAGTTTTGTTGTTGATTTAGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTGGGGTGCTTTGAGGCTTCCTGATCTTTCCAAGTTCAGATCCAAATGGAAGTGTGCTCCATCATCTGTTTTTATTAAAGAAGCTGTAAGTGGTTATGTATGTGGTAGCAAATTCTTGCGCACTTACCAAATTTTGCTTTGTTTATATATGAATCATGTCCTCTTTGACTTCACTTATTTAAATCGAGCCACTTGGTACACTGTACAGATGATCTATATGCTTCAATACTTGATGTCACGATATCTTTTATGCTTGCATATGGCTCTTTTTAGGGAGTCCCTCAATAGCATAGTGGAAAAACCAAGACACGTACTCTTTTCTGTTTGTTTTCTCAACTTTATTGGTTTATTTGATATGTATATGTCACATAAGAGTACTATTAAATTTATTAAAGAGATTTTATGAGGGTCATGTGATTCATGTCGAGTTCTTCCTCAGGAGTGAAATAGTGCTTGTGTCAAATTGTATGCATCTCAAGAAATTGAGTACATTCATTATTATTTTTTTTTTTGTTTCCTGTTGATACTGTGAGATCACATATTGGTTGGAGAGGGGAATGAATCATTCCTTATAAGGGTGTAGAAACTTGACTCATTTTAAAACCTTGTGGGGAAGCCTAAAATGGAAAGTCCAAAGAGGACAATATCTACTGTGGTGGGTTTGGGCTGTTACAAAGGGTGTTAGAGTTAGACATCGGGCGATGTGCCAGCAAGGACGTTGTCTCCCAAGGGGGTGGATTGTAAGATCCCACATTGGTTGGAGAGGGGAATGAAATATTCCTTATAAGAGTGTGGAAACCCCTCCCTGGTGGACGCGTTTCAAGGTTTCAAAATCTTGAGGGGAATCCCACAAGGGAAAAAGCCCAAACGAAATATTTCTTATAAGAGCGTGGAAACCCCTCCTTGGTGGACGCGTTTCAAGGTTTTAAAATCTTGAGGGGAATCCCACAAGGGAAAGCCCATGCGTTTCAAAATCTTGAGGGGAATCCCATAAGGGAAAACCCAAACGAAATATTCCTTACAAGCGTGTGGAATGGTGGGCTTGGACAATATTCCTTATAAGCGTGTGAAAACCTCTCCTTAGAGGACGCATTTTAAAATCTTGAGGAGAAGCCCAGAAGCCCGCGGTGGGCTTGGACTGTTACAAATGGTATTAGTGTCAGACACCGAGCAGTGTGTTAGCGAGGATGCTGGGCCCCAAGGGAGTGGGTTATGGGGAACAAAACATTCCTTATAAGGGTGTCGAATCCTCGCTCTTACAGGTACGTTCATTGTATTATTAAAAGAAAGTTCCGAGCCTACTAAGTGGACCTTAGATATAGGTCTCATAACCAACTTCAATTGTACTGCATTAACTTGAACTGACCGTTCACTTGCATCTTCGTTCAAACCCTTTTGTTCCATTATACCATTTTATGATTCCTCAGTATAGCTTAATCTTCTAATTATATAGAGAGGATAAGATTGTGCAACTAGTCATGTAGCTGATGAAGTGATGTTGGTTGGGGGTGGGAGAGTTAAGACGTATGTCAGTAATGGAAGAATCAGTTTATAATAGAATTAGGCACTATAGATTTTTGGATTCATATTAAACATATTCTTACCTGAGACATAGATGCTTGGCCACAACCAGTGTGCCCCTGCTTTCTAGATTGGCCTTCACTCAAATGCCAGGATAAGTAACTTGATCCACTGTTTCGTTTTGCAAATGCTTAGACAATGCATGGAGGTTGTTAATCAAAGAATACTATCTCCATTGGTATGAGGCCTTTTGGGAAATCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCTAACATGGTATCAGAGCTATGCCCTAAACTTAGCCATATCAATAGAATCCACAAATGTCGAACAAAGGGCTCCAAAAGAAAAAGGAGTCGAGCCTCAATTAAGGGGAGGCGTACTTTGTTCGAGGGGAGGTGTTGGATGAAAGTCTCATATCGGCTAATTTAGGGAATAATCATGGGTTTATAATCAATGAATACTCTCTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAACTTATGCTCAAAGTAGATAATATCATACCATTGTAGAGAGTCGTGTTCATCCAACATGGTATCAGAGCTATGCCCTAAACTTAGTCATGTCATTAGAATCCTCAAATGTCGAACAAAGGACTCCAAAAGAAAAAGGAGTCGAACCTCGATTTAGGAGAGACGTACTTTGTTCGAGAGGAGGTGTTGGATGAAAGTCTCATATCGGCTAATTTAGGGAATGATCATGGGTTTATAATTAATGAATACTCTCTCATTGGTGTGAGGCCTTTTGGGAAAGCCCAAAGCAAATCCATGAGAACTTATGTTCAAAGTAGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAATAGAGGTTATAATATATGACCCTCGTGTAACTTATACAAATCACAAACTCTTAAGGGGATGAATTCAAATCATGATGGTCATCTACTTAAGATTTAATATCCTGAAGTTATCTCAGTAACTAAATGTAGTAGGTTTAGGGCAGCTATCATGTAAGAGTTATTGAGGTGCATGCAAGGTGGTCTAGACATTGTGAGATAACGTTCTTAAAGAGTCCTAAGGAAAGGGTAATGCCCCATGCTTTGTAGTTCTTCAATATTCGTTAAATTAAAAGTTGAAGTTGGTGGGTTATGACGAAGTTCTTCACGTTTCCTTAAATATCAACCCGTGGTCAAATAATGTGAAATGAGAATAGAACAATAGGGGGCATGAACTTTTGGACTTTCTGCTTGATACCATATTAAAGCATCAGTAAATTTGAAAATTTGTGCCTCTCCCATGAAAATATGAGGCAGTTGAATCCATCTAGTTAACCGAAGTCTAAACGAATAGTTCGAATTCAGTACATTTTAGATTCAAAGTTCGATTATCTGATTGGTGACGTGACATGTTTGGTGTTATTTTTTATTGGTTCCTGGTGAGACTGATTTATGAAACTTGGATGCCACATTGAAACTTCAAAGGCCAAAGCTTAGCCCACACAAGGGAAGCTATCAGAACAAACCTCTCTGAGCTGCTGGGAGCTGACTCGTAAAGCGAAAACGCTCGAGAAGGTCGGCTACCTCGGTGAAAACAGAAGCATTGCTGCTCATACAGAAGCCCAGCCCTGCTATTCCTCCCATAACTGCTGCGGTGTAAGTGTAATATAA

mRNA sequence

ATGAATGCATGTAATAAGGCGTCGATGGGACCCCGTACGGCCGTCCCTATGCACCTCGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGTTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCCCAGAAGAAATCTGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTGGGGTGCTTTGAGGCTTCCTGATCTTTCCAAGTTCAGATCCAAATGGAAGTGTGCTCCATCATCTGTTTTTATTAAAGAAGCTGTAAGTGGTTATCCCACACAAGGGAAGCTATCAGAACAAACCTCTCTGAGCTGCTGGGAGCTGACTCGTAAAGCGAAAACGCTCGAGAAGGTCGGCTACCTCGGTGAAAACAGAAGCATTGCTGCTCATACAGAAGCCCAGCCCTGCTATTCCTCCCATAACTGCTGCGGTGTAAGTGTAATATAA

Coding sequence (CDS)

ATGAATGCATGTAATAAGGCGTCGATGGGACCCCGTACGGCCGTCCCTATGCACCTCGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGTTGTCCCCGCCCTCTTCTTCGTCTCTCCCACCGATCCCTTTTTCTTTCCCAGAAGAAATCTGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTGGGGTGCTTTGAGGCTTCCTGATCTTTCCAAGTTCAGATCCAAATGGAAGTGTGCTCCATCATCTGTTTTTATTAAAGAAGCTGTAAGTGGTTATCCCACACAAGGGAAGCTATCAGAACAAACCTCTCTGAGCTGCTGGGAGCTGACTCGTAAAGCGAAAACGCTCGAGAAGGTCGGCTACCTCGGTGAAAACAGAAGCATTGCTGCTCATACAGAAGCCCAGCCCTGCTATTCCTCCCATAACTGCTGCGGTGTAAGTGTAATATAA

Protein sequence

MNACNKASMGPRTAVPMHLDGANSTTNLSLSASFPLSMVVPALFFVSPTDPFFFPRRNLAVFFFTVWLIDAIWGALRLPDLSKFRSKWKCAPSSVFIKEAVSGYPTQGKLSEQTSLSCWELTRKAKTLEKVGYLGENRSIAAHTEAQPCYSSHNCCGVSVI

Homology

[Close]

BLAST of CmaCh16G005810 vs. ExPASy Swiss-Prot
Match: Q9M4W3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=ISPF PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-08
Identity = 46/107 (42.99%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 68  LIDAIWGALRLPDLSKF----RSKWKCAPSSVFIKEAV-----SGY-------------P 127
           ++DAI GAL LPD+ +       KWK APSSVFIKEAV     +GY             P
Sbjct: 123 VVDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRP 182

Query: 128 TQGKLSEQTSLSCWEL--------TRKAKTLEKVGYLGENRSIAAHT 145
                 E    +  +L          KAKT EKV  LGENRSIAAHT
Sbjct: 183 KVSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHT 229

[Close]

BLAST of CmaCh16G005810 vs. ExPASy Swiss-Prot
Match: Q9CAK8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPF PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 44/107 (41.12%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 68  LIDAIWGALRLPDLSKF----RSKWKCAPSSVFIKEAV-----SGY-------------- 127
           ++DAI GAL LPD+ +       KWK A SSVFIKEAV     +GY              
Sbjct: 118 VVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRP 177

Query: 128 -------PTQGKLSEQTSLSCWELTRKAKTLEKVGYLGENRSIAAHT 145
                    +  LS+        +  KAKT EKV  LGENRSIAAHT
Sbjct: 178 KISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHT 224

[Close]

BLAST of CmaCh16G005810 vs. ExPASy Swiss-Prot
Match: Q6EPN6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPF PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-06
Identity = 42/107 (39.25%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 68  LIDAIWGALRLPDLSKF----RSKWKCAPSSVFIKEAV-----SGY-------------P 127
           ++DAI GAL LPD+ +       +WK A SSVF++EAV     +GY             P
Sbjct: 109 VVDAILGALGLPDIGQIFPDSDPRWKGADSSVFMREAVKLMHEAGYELGNLDATLILQKP 168

Query: 128 TQGKLSEQTSLSCWEL--------TRKAKTLEKVGYLGENRSIAAHT 145
                 E    +  +L          KAKT EKV  LGENRSIAAHT
Sbjct: 169 KISPFKETIRSNLCDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHT 215

[Close]

BLAST of CmaCh16G005810 vs. TAIR 10
Match: AT1G63970.1 (isoprenoid F )

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 44/107 (41.12%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 68  LIDAIWGALRLPDLSKF----RSKWKCAPSSVFIKEAV-----SGY-------------- 127
           ++DAI GAL LPD+ +       KWK A SSVFIKEAV     +GY              
Sbjct: 118 VVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRP 177

Query: 128 -------PTQGKLSEQTSLSCWELTRKAKTLEKVGYLGENRSIAAHT 145
                    +  LS+        +  KAKT EKV  LGENRSIAAHT
Sbjct: 178 KISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHT 224

[Close]

BLAST of CmaCh16G005810 vs. TAIR 10
Match: AT1G63970.2 (isoprenoid F )

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 44/106 (41.51%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 69  IDAIWGALRLPDLSKF----RSKWKCAPSSVFIKEAV-----SGY--------------- 128
           +DAI GAL LPD+ +       KWK A SSVFIKEAV     +GY               
Sbjct: 111 VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPK 170

Query: 129 ------PTQGKLSEQTSLSCWELTRKAKTLEKVGYLGENRSIAAHT 145
                   +  LS+        +  KAKT EKV  LGENRSIAAHT
Sbjct: 171 ISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHT 216

The following BLAST results are available for this feature:

BLAST of CmaCh16G005810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4W3	6.0e-08	42.99	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan...	[more]
Q9CAK8	1.7e-07	41.12	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop...	[more]
Q6EPN6	3.3e-06	39.25	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa...	[more]

BLAST of CmaCh16G005810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63970.1	1.2e-08	41.12	isoprenoid F	[more]
AT1G63970.2	1.2e-08	41.51	isoprenoid F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	SUPERFAMILY	69765	IpsF-like	coord: 68..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005810.1	CmaCh16G005810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016114	terpenoid biosynthetic process
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity