Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTCACGTCGTCTCCTCATCACTTGGTGTCGCCACTGCCGCCGCCGCCGCCTCCTCCAAGCGGTCCTGCGCCGATTTCTACACTGTTGTTGTTACTGGTATTCCCCCGATCTGCATATGTCTTTCTTCTCACTTGGAAAACACAAATTAAGACTGGTCTAATGAAAGAATGGAGGAGTTGTTTAATTTATATATCGTCAATAAGAAAAGACGACTGGCAACGAAGAAAAAATCCTTTTGGTTATGGGGGCGTGGGTGTACCGCCGTTTTGATTTGCTGCAATTGAGGCTTTGATCGCTGTGCTCAGCTGGAAGTTGCCTTTTCTCCGCGATCATGAATTTTACAGCATCTCCCTTCTACTTTATTTTTCAGAGGATCATTCGAAGTAGTCTATCGCACTATCTGATTCGCTTTTTAATTTCTAGGTTGTAGGAGTTATTTTAATTGACCAATATCAACCATATTTATATTTGTAGACTGCAGTTGGAGAGAAGACAATGTGTGTGTTTCTTTTGATAAATTTGAAACTCTCTTGGATTGACCAATAGAATAACCATTGATTCTTTAAATTAACCAGAAATAAGAGCCGTATATATATGCTTTGAATTTCATTTACTTGATTTAAGAAGCCTTAGATACTGTTCAGGGTAGATTAGACATACCTTAAACCTTTTGGATGAAATATTTGTGTTACGCCTTTTGATGTCTAATATCTTCTTGTTAACAGCAAGGATATTACGTCTGGGTTATGTTCTGATCTGTGTGTTTCTTTACCTTCTAGCTTAATGAGTGGCATTGAGCAACTTACGCCTTTTGTTTATGATTTCATCCAGGTTGCATCTAGATCCTGTAAGTTTCACGTGGGTATTCAGAATCCTCATTGATCCGATTGCCTCAAAGTTACAATGGTTGATTCCACGTGAGCTCACTCTTTTCCTTGCTTGCTAAGTTTCATATGTCCCCCCGGAAAATGGAAAAGTATGTTATTTTCTAAAAGAAATTTGATTAAGAATTTTCTGCATAACAGGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGTATTTTTCATATCCCATTCTTGATTCGTTTTAATGTCTCTGCCTTTGGTTGTGTCATTTTGATTCTTACAGGATATCATAAGGATTTTACTTCATAAATTTTGGTTACAGTTGCTATTTTCTTCTTAATTTTTTTTTTTCAAGGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGGTCTGTAGTACTCTTTGGCCTTGTATCAGTTTTTCTATTTCTTGTTATTTTACATTATTGGTGATGTTTCATATTTTTGCTTTTGGTCCGGGGAAGTTTTCTGCTTGTGATCTTTTGTTACTATAAAAATTTGAACTCTACACTCCAACCATATAGTACCAAAACATCAAATGATTGATGATTAGCACTAATCACAATACTATTCAAACACAATACAAGGAAGATGTGATTTTTTTCCGGAAATTACAGGATGTAACCTATTTTGCTTTCTTCTGATTATGCTTGCTATTCTTCTTGAGAACATTATTATGTATGTTTCGGGCTGTTTGTTCATTCATTAGCTTCAAGTGCTCAAACAAGAGGTGGAAAGTATATGTATTAGTTGGAGTTATAATGTTATTGTAATGAAGGTATGCTCTTAGTGGAATTTAAGGGATAGTGGAAAACTAAAGGGTTTAGGATCATGAGAGTTCAGAAGCATCTCATATCAAACACATTAGATTTGTTAATGGTTCCATGGGTTTAGTGATTCAGTCTTTTATTTGAATCCTAAATCCTAACACCTTTTGATTCTTCTAGGATGTATCAAACCTTAGTTTACCTGTTTCTACAATTATTGCTAATGAAGTGTCATTTCGCATTTGTGTGGGCATTTGTTTAAGGAGAAGACTATATCACTTTAGTTATTTGGATTACATATAGGAAAAACTACTATTTGTTGGATGGAGAGGAATAGAAGTATCTTTGAAGAAAAGAATTTTAGTTTTCGTAGACCTTTGGGACCTTATCAAATGCCTAGCTTCTATTTGGTGTAACTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTACTTTTTGACAATTGGTTGCCTTTCAAGCCCTGTGATGGCTAGGATGGCTTATCTTCCTCTTTTGTTTTGATCTTTCAGTGATGTCTATTTCGGTTTCAATTTGAGAAAAGAAAGTGATTATACAAGAAGGTTTCATATCTTTTCTTTGATCGGAGTTGTTTTGCAATGGCAATGCCTGGTCATTTTGCAAAGTATGTTGACTAAGTATTCTGTGTATGAGATCTTTAGTTGGAATCATATCTTTGATAAGGTTGAATTGTTTTGCTTGTGTAAAGATAATCAATTAGAGTGCATAGGTAGTGAAGAAAGTTCCCTGAGCCCTCAGGATATGAAGATACATATGTTGACTTGATTATTACTAAACCCTACTTTTCTTTTCTCAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACGTAATAATCTTTTCTGCAATTGTTCAACTGTGCCAATTCTTTGTTTTTGTTTAAATTTTATTCATGCAAATTTGCTGTAAATAGAGGGATTTTAAAAATATGTTTTTTGAACTTTTATCATCAGCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGTAACCGATTGGTGAATGAAAATGTTTTACTCGAGTCATTGTTCCTATTTATCTTTGTTTGTCTTGACATATTGTATTTCTTGTGGATTTAATGGCTAAGTCGAGGATGTATAGTTAAACCCAACCTCCTTCTAGGTTGTTGGATTGGTCTAATGTTAGAGATCTATGGGAAAAAGTTGAAGATTGAAATTATTAAGGTTTTATAGCGATTTTCCTCTTCTTTCGTGCTCTCTTTTGAACTTCAGATTTTTACTTCAAATAAAATAACAGCAGTATGCTTCTCTATGTTGTCACTTCTTGTACATCCTTGAAACGATTGGACCTATTAACAAAAATTTTCAATTATATTTTAACTGAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGTAAGTTCCATTAGCGTATGCTCTCTGTGACTGGACTGCCCAATTTTGAATGCTATTGCTATTTTCTTTCCGCCCCACTCTAATCAATATGTTTAATGGTGAATGTTGCTCACTCAACAGGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTATGACATAACCTAGTCTATTACTTTTTTCCACTTGCTTATATATATATTTTTTCGTAAAAGAAAAAGTACAAGATGAATATGGTGACTGGTCGTTTGCTGTCCATACAAAAGCCATTGCATGAGTGAAATAAGAGTAGGGGACATTTTCTAAGCATTGTAGAAAGAAGACTGTTTGACTGTACTTTTAGTTTTAAGTTTTTTTTTTTAAAATATCTTTAAAAAATGTTTTTTATTTTTTGTATCCTTAAAAATTTATTTGGTTGCACTACATTCAAATTTGATTCAATTACTTACAATTTTTTTTTTTTTTTTTGTTCTTACATAGTTTGAAGATTTCCTGTCAATCACTTTAAAGTCAGAGTTTTAAAATTAATCCAATTTTTTAAAATGCTTTTATTTGTTATGATTTTAAAATAACACTTAATATAATCTAAATAATCTAAAATCACTCAAAATGCTGTATTAAACCCACTTTAAATGAGTACTTTTTCAAAGGTACTTTTTGAAAAAGTGTTTATTATTATTATTATTATTATTTTTTTTTGTCAAAAGCTGTTTCAGGGCACTGTTAGAATGATAACAATGTATGAAATATAATAATGTTTTCTACCACCCTCATTTTTGTAAATAATAAATTTCTGTTGTGAGCTTGTTGTCACGTACCTTGATGTCTTCTTTTATCTGTAGGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTAATTCTTGTTATATATATATATATATAAATTAATATATCATAGATTTGATAATTTGTCTAAACACTTGCGTGATTAATCTTACAATAAATGGTTTCATCTACGCCCACCAATTATAATTTATTCAAGATTGACTTTTATCAGCTAGATTGATTAAAGCACCATTCAGTATTGGTGGCGCAGATAAAATCTTTTAACTGTTTATGATAAACTTTATGGACTTACTCAATTCCATCTATTGTCGTCTAACCTTTGCTCTGCTTTATTCTGGATTCAGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGTGAGCTCATTCTCTTTTCTTATATGTTTGAGAACAACTTTGGTACTTTGTGGCATATGCTTAATGGAGTTACGTTTTACCATGCAGACATCATAGGTTGAAGTATAACTATCATGCTAAAAGTACTGTAGTTATTTGAATTATGACATCTTTATCTACTATACGGAAATAGAGTGGTTGCAGTATAATTAACGATGAGTTGGTGTATCTTCCAGAAAAGATATTTCTTAATTTGTCTTATCCCGTAAGAGTTTTTTTTTTGTGTAACATGGATGGGGAAGGTGTTGTGTATTACTCATTTTCTGCCTCTTTGTTAGCAATGACTTTATGTTAGTATGGATAGTGAATAGCGTGGTATTTTAAATTTAGTTTTACCTTCTATTAACATTTTCATCTGTTGAACATTGATTTTTAATGCTTGAATATTCCACTGCTCTGTTTTTAGTTTTACCTTTTGTTATTTATTTGTTTTGAGTGTCCCGTGTTTCACTTCGATCAAAAGCTTTGTTGCATTCAACATGGAGTGTGCCTTGTGCATTGAAATGCTATCTTGTGCAGTTTATTTGAGTCAAGTGTTTGGCGAAATTTAATCTTGATGCACAAATGCTAGTGCTACCTTTAATCTTTGCCTTCACTTTGAGAATATTGTATTTGGTTATATTGTTTTCAAATTATTTTGAAATTTGAAATATAGTTTTACCTCTCTTATTATTGATGTGAGCATGTGGGGAGAGTTATTATTTTATTTATTTTTGCCAACAAGAGCATATCTCAATTGGTTTAAGTATTATATCTTTTATCAAAAGGCTAGAGGTTTGAATTCCCACCCCATATATTGCCAAGGAAATTTGAAAAAAATAGTTGGGTTTTTTCCCCTAAAAGTAATGGTTCTTTCATTTTGGCATTATACTAGGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGGTTTGTTTTGATGAACCTTTCTCTTGTCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCTTTTTGTTGCTTTTATACATTGTGATGGTTGATGGTGTCGTCCTTTTGTCACTTGCGTTGGAAAATCGATGATCACACTGTGTTCTATCTGGTTGTCGATGAAGAGAACATGCATTGTTAACTCATGGTGGATGACCCCCTCTTAGGAAATTATAGTCTAGGATGACGCATCTCAGGCAATAGTATTTCACTTTATTGCTGATCTTGTATTATAAATGCCGGAGAGTATGCTCCCTCCTTGTATCTGTGCACATACCGATGATGCTGTCAGAGCACGTTAACAAGTAGGTCAATGGTACCTCTCTCTCTTTCACATGTTGTCCATAAATGGCTATTACTGTCAGCTGCAATTTTGGGGTGCATTTGAAATCGTTTTTTGAGCTCTCATTTGCTCATTTGGGTAGAAGCAAACGTCAGAATCATATTGCTAAGTCAAAATCTTGGTTTAATCTTTTTGGATCTTGTATCATTAACATTCTTAATCAGAGGCACTTTGCTCAAAATTCTCGAGGCCTTTTGTTCGACACTCCTCTTAGGCAAATGCCTGTGTTGTTGTCCCTTGGTCATAATGTGGTTGGCTGCTCCTAATACATATTTCCTATAATAAATAAACAAAAAGAAAGAAAGATGACGCAACCATACATTTTGCATGGATATGGAGATACATGGTAGATACATGCATATGGAGATTATTCAGCTTATTCTTTTACGAGTCTTTGTATAGTTATCCGGTAGAACTGTATGTATCCACGAATCAACTACTTTTGCATTTTGCATGTTGCAACCATACATTTTCTTTAATTTTTTGAATGTGGGAGCGTAGTTATCTTGTTTATCCAGTCTATTTACTTGCTTTTACCTTTGTCCTATTTTCTTCAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTATACCTTGATCTCCGCAATTCATTTTGTTGATCTCGAGAAGTTCAATGTTCCTTAGCTTTATTTCTTGACTGCCAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGTGATTATCCTTTCAATTCAATTTTTTTACATTGCATATCAGTTTAGGAATAAATTAGATTTCTTAATTCCTTTCTTTGCATCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGGTGATCGCTTCTCTTTGTTAATAATTCAGTATTTTTTTACTCGTTGAAAGTAATATTTGTGAGTTTTAGTCTACTTGGAGATGCTGTCAAAAATTTTAAGATCAATATGAGTTTAAGGCTATTAACCTATAGGGATGAGAGCGTGCTACTGCTGCCTCGATAATATTTTCATACGAAGATTCGTATCATTCAAGTTGAAATCTAATATTTTCCCCTTGGAGAGGTTTTCAAACCGTTATATTACACCTACAGTTATTAAAGCACCAATATCCTGTTGTGAGTTTGGTACAATTTTTGGGTCACTTCGTCCAGAATTTCATTAAAATCACTTAAAAAGCACCTGTAAAGTATGTTTTAGGAAAAAAAAAACCATATAACTATTGCTTCTTCAAAAGACTAGTTGGAATGCTTCTCTTAGAAAGATTTTATTTAAAGCCATCCCAAAGTCAACCTAGAAATTGTCACTATTCTTTTGTTTAGGAAAATGAACTTTGTACCTCTAGTTGGTTCTATCCACAAAGATTTTGGATTCTTTCACGAGGATTGAATTATAGCAATTTATATGAGGTCATGTATCCATTTCTGCAGTCAATTCTTTTGCTCTGCTTAATATCTATCTTTTCTCAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTAAGTCTTGAACTCACCTTGTGAATCAACTGCCTTACTTTTTACCTCATGTGATGCTCGAGTTACAGTAGAGTGTAGAACCCTGACCGATGACGCGTTTCTTATGGTTTTTCTTAATACAACTATCAGGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAAATCATATATAAGGTTCGTGGTAGTTTGGATGATTATATATGATCAATTTTGTATTTGCTTATTAGTTGTATCATATGTTGTTTTGTTCAATGGGAGCTGCTTCCCTCATACTGTATATGAACACACGCACACAGTTCAGGTCATTACATA
mRNA sequence
CTTCTTCACGTCGTCTCCTCATCACTTGGTGTCGCCACTGCCGCCGCCGCCGCCTCCTCCAAGCGGTCCTGCGCCGATTTCTACACTGTTGTTGTTACTGGTTGCATCTAGATCCTGTAAGTTTCACGTGGGTATTCAGAATCCTCATTGATCCGATTGCCTCAAAGTTACAATGGTTGATTCCACGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAAATCATATATAAGGTTCGTGGTAGTTTGGATGATTATATATGATCAATTTTGTATTTGCTTATTAGTTGTATCATATGTTGTTTTGTTCAATGGGAGCTGCTTCCCTCATACTGTATATGAACACACGCACACAGTTCAGGTCATTACATA
Coding sequence (CDS)
ATGGTTGATTCCACGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAA
Protein sequence
MVDSTSRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHYFNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKKDEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKHRGFAFVEFVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSKKRKQRAEFDEESMEFERTE
Homology
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match:
Q9Y4C8 (Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3)
HSP 1 Score: 463.4 bits (1191), Expect = 5.5e-129
Identity = 336/980 (34.29%), Postives = 504/980 (51.43%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SR+ VKNLP + + R R LF+ G +TD L TKDGK R+F FIGF++E EAQ A +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPWSKH----SKEKKGIKDGMEVEYDKNVSFLGSK 125
FNKSF+ T RIT E GDP PR WSKH S+ K+ KD E K+ K
Sbjct: 62 FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKD-----EK 121
Query: 126 EEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPS----HM 185
++ +L +D + QEFL V Q R + WAND L A + KGK KP+ +
Sbjct: 122 KKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDA----EPSKGKSKPASDYLNF 181
Query: 186 KKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNI 245
G++ + D EE SL +A ++SDM+Y S++ K S S + ++++
Sbjct: 182 DSDSGQESEEEGAGEDLEEE--ASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESE 241
Query: 246 DE--------DAENENEPIKKKLEMKDVQ--------MVDSKLPLETEAEEEDHSNHCD- 305
DE +AE E+ L+ +D + K P E AE E +N +
Sbjct: 242 DEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEP 301
Query: 306 -----------------------------------------------ADLLHMEESSSIL 365
D + EE L
Sbjct: 302 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL 361
Query: 366 E-----------------------------------------DKKDEMLENGRLFVRNLP 425
+ ++++++ E+GRLFVRNLP
Sbjct: 362 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLP 421
Query: 426 YAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQG 485
Y +TEE+LE+ F K+G +SE+H +D T++ KG A+I + PE A +A E+D +FQG
Sbjct: 422 YTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQG 481
Query: 486 RLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTV 545
R+LHV+P+ ++K + + S S+KKK+E + KA+ AS + WN+LFM P+ V
Sbjct: 482 RMLHVLPSTIKKEASEDASAL----GSSSYKKKKEAQDKANSASSHN--WNTLFMGPNAV 541
Query: 546 VENIARKYGVSKGELLDRES-DDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGK 605
+ IA+KY +K ++ D E+ +AVRVALGETQ+V E ++ L + GV++ S + A+
Sbjct: 542 ADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA-- 601
Query: 606 VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAA 665
+RS ++LVKNLP G+ +L FG FGSL +++LP I A+V FLEP AR A
Sbjct: 602 ----ERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKA 661
Query: 666 FKGLAYKRYKDAPLYLEWAPDNILS-------------QNPMDGNVKDEKV---GEGDAR 725
F+ LAY ++ PLYLEWAP + S PM+ + + + GE
Sbjct: 662 FRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPED 721
Query: 726 RVILEQAVDGIS--------DVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGR 785
E+ D S + + + + + +LF+KNLNF TT+E L++ FS K G
Sbjct: 722 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFS---KVGT 781
Query: 786 ILSAKV-KKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDN 839
+ S + KK K G +SMGFGF+E+ E A LQG V+DGH + +++
Sbjct: 782 VKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKP 841
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match:
Q54PB2 (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)
HSP 1 Score: 454.1 bits (1167), Expect = 3.4e-126
Identity = 309/893 (34.60%), Postives = 474/893 (53.08%), Query Frame = 0
Query: 4 STSRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAI 63
S +RICVK LPK + D R + F + G +TD K+++ KDGKSR F FIGF TE A+ A+
Sbjct: 2 SNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KDGKSRLFGFIGFSTEQSAKNAL 61
Query: 64 HYFNKSFLSTHRITCESAWKVGDPKIPRPWSKHS---------------KEKKGIK---D 123
N +F+ T +I E+A + RPWSK+S KEKK +K D
Sbjct: 62 S-LNGTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQD 121
Query: 124 GMEVEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWAND------IL 183
+E + +K K + L + ++DP+ QEFL + + N KVW ND I
Sbjct: 122 KLEQQSNKK----QKKSHTNSLLDAELENDPEYQEFLNLVAPQANRKVWENDDKEIGKIN 181
Query: 184 MAPETDQNGK--------GKEKPSHMKKID---GKKLKLV---NVDGDKAEEMKTSLHTN 243
E + G+ GK S KKI+ GK L+ + D E++ + T
Sbjct: 182 RGEEEGEEGEENDNQVEDGKLPFSGKKKIELDHGKNKDLLVFEDADASDEEDLYEDMPTA 241
Query: 244 SAHDDKISDMEYFNSRVTKK---------WSDSQTSDDDNIDE---------DAENENEP 303
+K D++ + KK W S++D I E + E+E E
Sbjct: 242 PKKQNKKDDVDSIINEKKKKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEEESEEED 301
Query: 304 IKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILE--------DKKDE 363
+ K KD +D + E +++ N D D ++ S I K+DE
Sbjct: 302 VNNKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDE 361
Query: 364 ML-ENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFA 423
+ E+GR+FVRNL Y+ EE+LE+ F KFG +SE+H+ +D D+++SKGIA+ILY PE A
Sbjct: 362 DVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENA 421
Query: 424 KRALEELDSSIFQGRLLHVMP--AQLRKTFEKPEENILENQRSKSFKKKREEERKASEAS 483
+AL ++D +FQGRL+HV+P A K F + ++N S K E+E+K S
Sbjct: 422 VQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTS 481
Query: 484 GNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTN 543
G+T WN+LFMR D +V ++A +Y +++G+LLD DLAVR+ L ET V+ ETKK L +
Sbjct: 482 GSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLED 541
Query: 544 AGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKI 603
GV + + G KRSN +LLVKN+P+ + E EL +F KFG L +++L P +
Sbjct: 542 QGVIIQDIGN------KGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPART 601
Query: 604 LALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILS----QNPMDGNVKDEKVGEG 663
+AL+ ++ P+ A+ FK LAY ++ PLYLEWAP+ + + + K EK +
Sbjct: 602 IALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSSDS 661
Query: 664 DARRVILEQAVDGISDVDFDPDRVESRSLFV--KNLNFKTTDESLRKHFSEHMKGGRILS 723
+ +E + ++ + FV KNLN+KTT+E+L F +
Sbjct: 662 SNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNI 721
Query: 724 AKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQR 783
A + + GFGF+EF S + A L G+ +DG+ I L++ + N +
Sbjct: 722 ATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEI 781
Query: 784 KVEKE-----------------KSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMK 806
+E K S+K++++N+ FE+T K++R+LF+ YG+I+S+R+P K
Sbjct: 782 NKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK 841
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match:
Q8R3C6 (Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1)
HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-121
Identity = 316/966 (32.71%), Postives = 486/966 (50.31%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SR+ VKNLP + + R R LF+ G +TD L TKDGK R+F FIGF++E EAQAA+++
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGD 125
F++SF+ T RIT E GDP PR WSKH+++ K + + K+
Sbjct: 62 FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKGPS 121
Query: 126 DLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMA----PETDQNGKGKEKPSHMKKID 185
DL+ +D K QEFL + Q R WAND L A +T + S
Sbjct: 122 DLEK--LKEDAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDYLNFDSDSNSDS 181
Query: 186 GKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSR-----VTKKWSDSQTSDDD- 245
G++ + D EE L +A ++SDM+Y S+ V+ + D + S+D+
Sbjct: 182 GQESEEEPAREDPEEEQ--GLQPKAAVQKELSDMDYLKSKMVRAEVSSEDEDEEDSEDEA 241
Query: 246 -NIDEDAENENE---------------------------------PIKKK---------- 305
N +E +E E E P+ +K
Sbjct: 242 VNCEEGSEEEEEEGSPASPAKQGGVSRGAVPGVLRPQEAAGKVEKPVSQKEPTTPYTVKL 301
Query: 306 -------LEMKDVQMVDSKLPLETEAEEEDHSN---HCDADLLHMEESSSILE------- 365
E ++ + P+ H N + DL EE L+
Sbjct: 302 RGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMG 361
Query: 366 ---------------------------------DKKDEMLENGRLFVRNLPYAATEEELE 425
++++++ ++GRLFVRNL Y ++EE+LE
Sbjct: 362 GRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLE 421
Query: 426 EHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQ 485
+ F +G +SE+H +D T++ KG A++ + PE A +A E+D +FQGR+LHV+P+
Sbjct: 422 KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 481
Query: 486 LRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYG 545
++K E + N S+KKK+E KA+ +S + WN+LFM P+ V + IA+KY
Sbjct: 482 IKK-----EASQEANAPGSSYKKKKEAMDKANSSSSHN--WNTLFMGPNAVADAIAQKYN 541
Query: 546 VSKGELLDRES-DDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNH 605
+K ++ D E+ +AVRVALGETQ+V E + L + GV + S + A+ +RS
Sbjct: 542 ATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLIDNGVCLDSFSQAAA------ERSKT 601
Query: 606 ILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRY 665
++L KNLP G+ E+ F +FGSL +++LP I A+V FLEP AR AF+ LAY ++
Sbjct: 602 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 661
Query: 666 KDAPLYLEWAPDNILSQNPM-----------DGNVKDEKVGEGDARRVILEQAVDGISDV 725
PLYLEWAP + P V+ E V + + + +E A +
Sbjct: 662 HHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKM 721
Query: 726 DFDPDRVESR--------SLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKV-KKHIKKG 785
+ + + E +LF+KNLNF TT+E+L+ FS K G I S + KK K G
Sbjct: 722 EEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFS---KVGAIKSCTISKKKNKAG 781
Query: 786 QHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCH----VKKDNQGQRKVEKEK 839
+SMGFGF+E+ E A LQG +DGH + +++ + +++V K++
Sbjct: 782 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQ 841
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match:
Q5AJS6 (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MRD1 PE=3 SV=2)
HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-114
Identity = 277/858 (32.28%), Postives = 469/858 (54.66%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SR+ VK LPK+ + +LR FS++G++TDVKLM+ ++G+SR+FAFIG+++ A+ A+ Y
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPW-SKHSKEKKGIKDGMEVEYDKNVSFLGSKEEG 125
FNKSF+ T RI E A DP +P + K +E++ +KD E ++ + K++
Sbjct: 62 FNKSFIDTARIEVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQERLLEQELRAQAKKQKT 121
Query: 126 DDLKLSIQDD---DPKIQEFLQVTQTRVNSKVWANDIL---MAPETDQNGKGKEKPSHMK 185
I D+ +PK++E+++V + K WAND + + Q+ + ++
Sbjct: 122 KSTS-EIDDEIASNPKLREYMEVMKPSHQVKSWANDTIADGSGGPSVQDLENALNGNNES 181
Query: 186 KIDGKKLKLVNVDGDKAEE------MKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTS 245
+D +++VN D +++ ++ H + +++ +M T + + +
Sbjct: 182 PVDKSNIEVVNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMSLGDLPTNEENKDKNE 241
Query: 246 DDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSI 305
+N+ A NEN + L+ + ++ ++ E E ++ + +A E
Sbjct: 242 SGENL---AANENISDLEWLKSRSTRIKENGEVPEIVPEVKEVNEVTEATQQSDNEPEMT 301
Query: 306 LEDK-KDEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYIL 365
E++ ++ E GRLF+RN+ Y A+EE+ F ++G + EVH+ +D T +SKG Y+
Sbjct: 302 PEEQIAHKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 361
Query: 366 YSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERK 425
+ E A RA LD IFQGRLLH++PA +K E ++ ++ KK+RE ++K
Sbjct: 362 FLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRLDEFDL----KNLPLKKQRELKKK 421
Query: 426 ASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETK 485
A +A+ +WNSL+M D V+E++A K GV+K +L+D E+ AV+ AL E V+ + +
Sbjct: 422 A-QAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVKQALAEAHVIGDVR 481
Query: 486 KALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL 545
K + GV++ S D +R + I+LVKN P+G++ E+ +F +G L ++++
Sbjct: 482 KYFEDRGVDLTSF--------DKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLM 541
Query: 546 PPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNV---KDEK 605
PP +A++ F + ARAAF LAYKR+K + LYLE P ++ ++ P V +++
Sbjct: 542 PPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQ 601
Query: 606 VGEGDARRVILEQAVDGISDVDFDPDRVE--SRSLFVKNLNFKTTDESLRKHFSEHMKGG 665
E I + G S D + + V+ + ++FVKNLNF TT ++L F + + G
Sbjct: 602 QNEHAVEAKISANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLF-KPLPGF 661
Query: 666 RILSAKVKKHIK-KGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKD 725
+ + K K K G+ +SMGFGF+EF + E A S L G VLDGH + L++ H +
Sbjct: 662 VVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGT 721
Query: 726 NQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKH-RGFAFVE 785
++K S+K++++N+ FEAT KDL +LF +GQ+KS+R+P KF + RGFAFVE
Sbjct: 722 GTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVE 781
Query: 786 FVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQN----P 839
F +EA+ A L HL GR LV++ A++ E+ + Q +QN
Sbjct: 782 FNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDAENAEVEIERMTKKVKKQVATQNLAAAR 841
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match:
Q4PC17 (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=MRD1 PE=3 SV=1)
HSP 1 Score: 413.3 bits (1061), Expect = 6.6e-114
Identity = 288/870 (33.10%), Postives = 464/870 (53.33%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SR+ V+ LP ++ D RLR FS+KG +TDVKLMR DG SR+F F+G+R+E EAQ A+ Y
Sbjct: 2 SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKK---------GIKDGMEVEYDKNVS 125
FN++F+ T RI+ E A K+GD ++ + + D + + DK+ +
Sbjct: 62 FNRTFIDTSRISIELAKKIGDEELVHQREERRNRRNAGAGPEGSASTSDARKRKADKSDT 121
Query: 126 FLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKP-- 185
+EEG K + +EF+ V Q + K W N+ + +T Q+ E+
Sbjct: 122 ---QQEEGSGKKKPKKGGAISFEEFMSVMQPKAKRKAWQNEDALPEQTMQDIVAPEEAIQ 181
Query: 186 -----SHMKKIDGKKLKLVNVDGDKAE----EMKTSLHTNSAHDDKISDMEYFNSRVTKK 245
+KK D + A+ +T +A+D ++D EY R+ +
Sbjct: 182 KKAARKALKKADAAAAATATAESTAAQPDSGREETPEPDAAANDVGLTDEEYMRLRMKHR 241
Query: 246 WSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNH-----CD 305
+D D +++ + + E D + D +++ E ED H C
Sbjct: 242 VG----TDLDTLEQSSSG------PEFEQSDNEKDDDDAAADSDPESEDEPIHDQGFECK 301
Query: 306 ADLLHMEESSSILEDKK--DEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVD 365
+ + + +D+K D+++E+GRLF+RNLP+AA+ +E+ F FGTV +VH+ +D
Sbjct: 302 QAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLD 361
Query: 366 KDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQR 425
K T+ SKG+A++ +S P A A D S FQGRLLH++PA + + +++
Sbjct: 362 KQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDALAE-----TGSKK 421
Query: 426 SKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELL----DRESDD 485
+ + K+ R E++K W+ L+M D V +IA + GV+K ++L + +D+
Sbjct: 422 TATLKQARAEQKKQDATKDFN--WSMLYMSSDAVASSIADRLGVNKSDILNPGANGGADN 481
Query: 486 LAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEG 545
AVR+AL ET+++ ETK+ L G+NV + F K RS+ +LVKN+PYG+S
Sbjct: 482 AAVRLALAETRIIQETKEFLAQQGINV---DAFQGAK---GPRSDTTILVKNIPYGTSAE 541
Query: 546 ELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNI 605
E+ +FG+ G +DK+++PP+ +A+V + AR AF+ +AYKR+K LYLE AP +
Sbjct: 542 EVEKLFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRFKGGILYLEKAPVGL 601
Query: 606 LSQNPMDGNVKDEKVGEGDARRV-ILEQAVDGIS-DVDFD--------PDRVESRSLFVK 665
L+Q+ KVGE ++ I+ +++D + VD D + V+ +L+VK
Sbjct: 602 LTQH---------KVGEKVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEAVDGATLYVK 661
Query: 666 NLNFKTTDESLRKHFS--EHMKGGRILSAKVKKHIKKGQHVSMGFGFLEFDSVETATSVC 725
NL+F TTDE L F RI + + + G +SMG+GF+ F S++ A +
Sbjct: 662 NLSFSTTDERLTAFFHGLSDFAFARIQTKPDPR--RPGARLSMGYGFVGFKSIDAARTAQ 721
Query: 726 SNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPY 785
+ G VLD H +++ +++ + STK+L++N+ FEAT +D+R LFS
Sbjct: 722 KAMDGKVLDAHTLVVTF--ARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQ 781
Query: 786 GQIKSLRLPMKF-GKHRGFAFVEFVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEE 828
GQ+KS+RLP KF RGF FVE+ T +EAQ+A +AL +THL GRHLVL+ + S ++
Sbjct: 782 GQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWSHLASSTQQ 832
BLAST of CmaCh16G005660 vs. TAIR 10
Match:
AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )
HSP 1 Score: 782.7 bits (2020), Expect = 2.9e-226
Identity = 446/830 (53.73%), Postives = 578/830 (69.64%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SRICVKNLPK + +++LR FS+KGEITD KLMR+ DGKSRQF FIGFR+ EAQ AI Y
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPWSK--HSKEKKGIKDGMEVEYDKNVSFLGSKEE 125
FN ++L T I E A KVGD PRPWS+ H KE++ K E D N G K
Sbjct: 62 FNNTYLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAK--GGK-- 121
Query: 126 GDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGK 185
K + DDP+ QEFL+V Q R SK+W+ND+ + P ++ GK K +KK D +
Sbjct: 122 ----KRKAEVDDPEFQEFLEVHQ-RSKSKIWSNDMSIPPAPEETGKEKVL---VKKAD-E 181
Query: 186 KLKLVNVDGDKAEEM----KTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDE 245
++ V+ KA++ KT A D +SDMEYF SR+ K SDS++ ++
Sbjct: 182 QIVSNGVEPKKAKKSSDTEKTKKSKVVAASDDVSDMEYFKSRIKKNLSDSESDNESEDSS 241
Query: 246 DAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKK-- 305
+ E ++ K + + +D + P++ + E D D + +E + ++ K
Sbjct: 242 EDEAGDDDGKAETDGQDADI--RYFPIDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAV 301
Query: 306 -DEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPE 365
D++L+ GRLFVRNLPY ATEEEL EHF FG +SEVHLV+DK+T+RS+GIAYILY PE
Sbjct: 302 SDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPE 361
Query: 366 FAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEAS 425
A RA+EELD+S FQGRLLH++PA+ R+T +K + + K+FK+KREE+RKASEA
Sbjct: 362 CAARAMEELDNSSFQGRLLHILPAKHRETSDKQVND--TSNLPKTFKQKREEQRKASEAG 421
Query: 426 GNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTN 485
G+T+AWNSLFMRPDT++ENI R YGVSK ELLDRE++D AVR+ALGET+V+AETK+AL
Sbjct: 422 GDTKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAK 481
Query: 486 AGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKI 545
AGVNV SLE+FA+ D RS HILLVKNLP+ S+E ELA MFGKFGSLDKIILPPTK
Sbjct: 482 AGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKT 541
Query: 546 LALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILS-QNPMDGNVKDEKVGEGDAR 605
+AL +FLEP+ ARAA KG+AYKRYKDAPLYLEWAP NIL +N D N + + E R
Sbjct: 542 MALAVFLEPAEARAALKGMAYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVR 601
Query: 606 RVILEQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKK 665
RV LEQ V+ DPD ES L VKNL+FKTTDE L+KHF++ +K G+ILS + K
Sbjct: 602 RVNLEQ------QVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIK 661
Query: 666 HIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKE 725
H K +++S G+GF+EFDSVETATSV +LQGTVLDGHA++L+ C K+ ++ + K+
Sbjct: 662 HKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKD 721
Query: 726 KSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMK-FGKHRGFAFVEFVTKQEAQNA 785
K TKL V+N+AFEAT ++LRQLFSP+GQIKS+RLP K G++ G+AFVEFVTKQEA NA
Sbjct: 722 KPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 781
Query: 786 FQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSK 825
+AL++TH YGRHLVLE A + S+E +R R+AA+F + D ++ SK
Sbjct: 782 KKALASTHFYGRHLVLEWANDDNSMEAIRKRSAAKFDEENDNARKRKSSK 808
BLAST of CmaCh16G005660 vs. TAIR 10
Match:
AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 578.9 bits (1491), Expect = 6.4e-165
Identity = 358/743 (48.18%), Postives = 459/743 (61.78%), Query Frame = 0
Query: 6 SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
SRI VKN+PK++ +++LR +FSEKGEITDVKL R DG+SRQFA+IGFR+E +AQ AI Y
Sbjct: 4 SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITY 63
Query: 66 FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGD 125
FNK+F +H+I+ V DP R K KG DK + K++ +
Sbjct: 64 FNKNFKHSHQISV----LVADPPPRRTQGKVDAYAKG---------DKQI----QKKDPE 123
Query: 126 DLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGKKL 185
D DP++QEFL K W+ND+ + P + K K S +D KK
Sbjct: 124 ------VDHDPQLQEFLHQEH---KLKFWSNDMCIHPSNGADDPNKAKRSF---LDSKKT 183
Query: 186 KLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDEDAENEN 245
+ S D +SDMEYF SR+ K N+D D E ++
Sbjct: 184 R------------------KSKVGDDVSDMEYFKSRIKK-----------NLDSDCETDS 243
Query: 246 EPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKKDEMLENGR 305
+ + P++ E + + D + +E D D++L+ GR
Sbjct: 244 R-----------EDAINVFPIDGEVKADRVDKDDDGHAMEVE------ADGSDDVLDAGR 303
Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
LFV LPY+ TEEEL EHF KFG +SEVHLV+DKDTR +G+A++LY PE AK A+++L
Sbjct: 304 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 363
Query: 366 DSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSL 425
D FQGR LH++PA+ R K +N + KSFKK+REE+RKASEA GNT AWNS
Sbjct: 364 DKLPFQGRTLHILPAKPRAMSAKQVDN--SSNLPKSFKKEREEQRKASEACGNTNAWNSF 423
Query: 426 FMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASLE 485
FMRPDT++EN+ R YGV+K ELLDRE +D AVR+ALGET+V+ ETK+AL AGV V SLE
Sbjct: 424 FMRPDTILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIMETKEALAKAGVRVTSLE 483
Query: 486 EFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEP 545
EFA+ K D RS HILLVK+LP+ S+E ELA MF KFGSLDKI+LPPTK +ALV+FLE
Sbjct: 484 EFAARKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVVFLEA 543
Query: 546 SGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPM-DGNVKDEKVGEGDARRVILEQAVD 605
+ ARAA GLAY RYKDAPLYLEWAP +IL + D K V E DARRV L+Q V
Sbjct: 544 AEARAAMNGLAYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEENDARRVNLDQQVG 603
Query: 606 GISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK-GQHV 665
SD+ ES L VKNL+FKTTDE L+KH + +K G+ILS VK+ I+ +
Sbjct: 604 IYSDI------TESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILS--VKQIIRDWTRRR 661
Query: 666 SMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLV 725
S G+GF+EFDSVETATSV +L G VLDGH+++L K+ +K KL V
Sbjct: 664 SSGYGFVEFDSVETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGSDKVTKLAKLHV 661
Query: 726 RNVAFEATGKDLRQLFSPYGQIK 747
+NVAFEAT K+LRQLFSP+GQI+
Sbjct: 724 KNVAFEATKKELRQLFSPFGQIQ 661
BLAST of CmaCh16G005660 vs. TAIR 10
Match:
AT5G05720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 99.0 bits (245), Expect = 2.0e-20
Identity = 98/297 (33.00%), Postives = 141/297 (47.47%), Query Frame = 0
Query: 540 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPM-DGNVKDEKVGEGDARRVI 599
V+FLEP AR A KG+ + + + AP +IL + D N V E D RR +
Sbjct: 204 VVFLEPIEAREALKGMGVQALQRCS-PVSGAPRDILEPKALADNNENTSDVEENDVRRRL 263
Query: 600 -LEQAVDGISDVDFDPDRVESRSLFVKNLNFKT-------TDESLRKHFSEHMKGGRILS 659
L+Q V D D E L+ F+T TDESL+KH +E +K G+ILS
Sbjct: 264 NLDQ------QVGIDSDITEVCPLYDCCGRFETMYSELQDTDESLKKHLTELVKQGKILS 323
Query: 660 AKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQR 719
K GTV+DGHA++L K +
Sbjct: 324 FK----------------------------------GTVVDGHALILSFSKNKPSGTVGK 383
Query: 720 KVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKHRGFAFVEFVTKQE 779
++K+ TKL V+N+AFEAT K++RQLF+P+GQIKS+ LP + K R +A +T
Sbjct: 384 DLDKDTILTKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPER-TKGR-YAACSSLTSLN 443
Query: 780 AQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSKKRK 828
A S+T V+E K S++ +R R+AA++ + + + NP KKRK
Sbjct: 444 A-------SSTRYLPSLQVIEWKKVDNSMKAIRYRSAAKYVDQE--NNNP---KKRK 445
HSP 2 Score: 84.0 bits (206), Expect = 6.5e-16
Identity = 95/333 (28.53%), Postives = 154/333 (46.25%), Query Frame = 0
Query: 6 SRICVKNLP-KFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIH 65
S I VKNLP K + + RLR +FS KGEI DVKL R DGKSRQFA+IGFRTE EAQ AI
Sbjct: 2 SWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAIT 61
Query: 66 YFNKSFLSTHRITCESAWKVGDPKIPRPWSK---------HSKEKKGIK-------DGME 125
Y NK F+ T+RI+ E V DP PR K ++K K IK DG +
Sbjct: 62 YVNKCFIDTYRISVE----VADPP-PREEGKENTEHFSNAYAKGDKKIKKKPEVSPDGAD 121
Query: 126 VEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNG 185
+S L SK+ +++ DD E+ + ++T+ N L ++D
Sbjct: 122 EPNKAKISLLDSKKTRKIKVVALVGDDVSDMEYYK-SRTKKN--------LSDSDSDCET 181
Query: 186 KGKEKPSHMKKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKI--------SDMEYFNS 245
G E H+ IDG +++ D+ ++ T H D + ++
Sbjct: 182 YGCEDAIHVFPIDG------DIEADRVDKEFTIHVFGFGHQDVVFLEPIEAREALKGMGV 241
Query: 246 RVTKKWSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQM---VDSKLPLETEAEE----E 305
+ ++ S + D ++ A +N +E DV+ +D ++ ++++ E
Sbjct: 242 QALQRCSPVSGAPRDILEPKALADNNENTSDVEENDVRRRLNLDQQVGIDSDITEVCPLY 301
Query: 306 DHSNHCDADLLHMEESSSILEDKKDEMLENGRL 307
D + ++++ L+ E+++ G++
Sbjct: 302 DCCGRFETMYSELQDTDESLKKHLTELVKQGKI 314
BLAST of CmaCh16G005660 vs. TAIR 10
Match:
AT1G49760.1 (poly(A) binding protein 8 )
HSP 1 Score: 85.1 bits (209), Expect = 2.9e-16
Identity = 104/414 (25.12%), Postives = 168/414 (40.58%), Query Frame = 0
Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
L+V +L T+ +L E F + G V V + D TRRS G Y+ Y+ P+ A RAL EL
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 366 DSSIFQGRLLHVMPAQLRKTFEKP-EENILENQRSKSFKKKREEERKASEASGNTRAWNS 425
+ GR + VM + + K NI KS K E ++
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA----------- 166
Query: 426 LFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASL 485
P + G SKG + D A + A+ + + K + G V L
Sbjct: 167 --FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV-YVGPFVHKL 226
Query: 486 EEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL-----PPTKILAL 545
+ SG+ K + VKNL S+ EL +FG+FG ++ +K
Sbjct: 227 QRDPSGE----KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGF 286
Query: 546 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVIL 605
V F A A L K + D EW ++ + +K +
Sbjct: 287 VNFENSDDAARAVDALNGKTFDDK----EWFVGKAQKKSERETELKQK-----------F 346
Query: 606 EQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK 665
EQ++ + D+ + +L+VKNL+ TD+ LR+HF+ G I S KV ++
Sbjct: 347 EQSLKEAA------DKSQGSNLYVKNLDESVTDDKLREHFAPF---GTITSCKV---MRD 406
Query: 666 GQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVE 714
VS G GF+ F + E AT + + G ++ + + + K+D + + + +
Sbjct: 407 PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ 415
BLAST of CmaCh16G005660 vs. TAIR 10
Match:
AT1G49760.2 (poly(A) binding protein 8 )
HSP 1 Score: 85.1 bits (209), Expect = 2.9e-16
Identity = 104/414 (25.12%), Postives = 168/414 (40.58%), Query Frame = 0
Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
L+V +L T+ +L E F + G V V + D TRRS G Y+ Y+ P+ A RAL EL
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 366 DSSIFQGRLLHVMPAQLRKTFEKP-EENILENQRSKSFKKKREEERKASEASGNTRAWNS 425
+ GR + VM + + K NI KS K E ++
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA----------- 166
Query: 426 LFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASL 485
P + G SKG + D A + A+ + + K + G V L
Sbjct: 167 --FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV-YVGPFVHKL 226
Query: 486 EEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL-----PPTKILAL 545
+ SG+ K + VKNL S+ EL +FG+FG ++ +K
Sbjct: 227 QRDPSGE----KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGF 286
Query: 546 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVIL 605
V F A A L K + D EW ++ + +K +
Sbjct: 287 VNFENSDDAARAVDALNGKTFDDK----EWFVGKAQKKSERETELKQK-----------F 346
Query: 606 EQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK 665
EQ++ + D+ + +L+VKNL+ TD+ LR+HF+ G I S KV ++
Sbjct: 347 EQSLKEAA------DKSQGSNLYVKNLDESVTDDKLREHFAPF---GTITSCKV---MRD 406
Query: 666 GQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVE 714
VS G GF+ F + E AT + + G ++ + + + K+D + + + +
Sbjct: 407 PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ 415
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9Y4C8 | 5.5e-129 | 34.29 | Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3 | [more] |
Q54PB2 | 3.4e-126 | 34.60 | Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=... | [more] |
Q8R3C6 | 2.5e-121 | 32.71 | Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1 | [more] |
Q5AJS6 | 1.0e-114 | 32.28 | Multiple RNA-binding domain-containing protein 1 OS=Candida albicans (strain SC5... | [more] |
Q4PC17 | 6.6e-114 | 33.10 | Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 ... | [more] |