CmaCh16G005660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G005660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionmultiple RNA-binding domain-containing protein 1-like
LocationCma_Chr16: 2906039 .. 2915534 (+)
RNA-Seq ExpressionCmaCh16G005660
SyntenyCmaCh16G005660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTCACGTCGTCTCCTCATCACTTGGTGTCGCCACTGCCGCCGCCGCCGCCTCCTCCAAGCGGTCCTGCGCCGATTTCTACACTGTTGTTGTTACTGGTATTCCCCCGATCTGCATATGTCTTTCTTCTCACTTGGAAAACACAAATTAAGACTGGTCTAATGAAAGAATGGAGGAGTTGTTTAATTTATATATCGTCAATAAGAAAAGACGACTGGCAACGAAGAAAAAATCCTTTTGGTTATGGGGGCGTGGGTGTACCGCCGTTTTGATTTGCTGCAATTGAGGCTTTGATCGCTGTGCTCAGCTGGAAGTTGCCTTTTCTCCGCGATCATGAATTTTACAGCATCTCCCTTCTACTTTATTTTTCAGAGGATCATTCGAAGTAGTCTATCGCACTATCTGATTCGCTTTTTAATTTCTAGGTTGTAGGAGTTATTTTAATTGACCAATATCAACCATATTTATATTTGTAGACTGCAGTTGGAGAGAAGACAATGTGTGTGTTTCTTTTGATAAATTTGAAACTCTCTTGGATTGACCAATAGAATAACCATTGATTCTTTAAATTAACCAGAAATAAGAGCCGTATATATATGCTTTGAATTTCATTTACTTGATTTAAGAAGCCTTAGATACTGTTCAGGGTAGATTAGACATACCTTAAACCTTTTGGATGAAATATTTGTGTTACGCCTTTTGATGTCTAATATCTTCTTGTTAACAGCAAGGATATTACGTCTGGGTTATGTTCTGATCTGTGTGTTTCTTTACCTTCTAGCTTAATGAGTGGCATTGAGCAACTTACGCCTTTTGTTTATGATTTCATCCAGGTTGCATCTAGATCCTGTAAGTTTCACGTGGGTATTCAGAATCCTCATTGATCCGATTGCCTCAAAGTTACAATGGTTGATTCCACGTGAGCTCACTCTTTTCCTTGCTTGCTAAGTTTCATATGTCCCCCCGGAAAATGGAAAAGTATGTTATTTTCTAAAAGAAATTTGATTAAGAATTTTCTGCATAACAGGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGTATTTTTCATATCCCATTCTTGATTCGTTTTAATGTCTCTGCCTTTGGTTGTGTCATTTTGATTCTTACAGGATATCATAAGGATTTTACTTCATAAATTTTGGTTACAGTTGCTATTTTCTTCTTAATTTTTTTTTTTCAAGGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGGTCTGTAGTACTCTTTGGCCTTGTATCAGTTTTTCTATTTCTTGTTATTTTACATTATTGGTGATGTTTCATATTTTTGCTTTTGGTCCGGGGAAGTTTTCTGCTTGTGATCTTTTGTTACTATAAAAATTTGAACTCTACACTCCAACCATATAGTACCAAAACATCAAATGATTGATGATTAGCACTAATCACAATACTATTCAAACACAATACAAGGAAGATGTGATTTTTTTCCGGAAATTACAGGATGTAACCTATTTTGCTTTCTTCTGATTATGCTTGCTATTCTTCTTGAGAACATTATTATGTATGTTTCGGGCTGTTTGTTCATTCATTAGCTTCAAGTGCTCAAACAAGAGGTGGAAAGTATATGTATTAGTTGGAGTTATAATGTTATTGTAATGAAGGTATGCTCTTAGTGGAATTTAAGGGATAGTGGAAAACTAAAGGGTTTAGGATCATGAGAGTTCAGAAGCATCTCATATCAAACACATTAGATTTGTTAATGGTTCCATGGGTTTAGTGATTCAGTCTTTTATTTGAATCCTAAATCCTAACACCTTTTGATTCTTCTAGGATGTATCAAACCTTAGTTTACCTGTTTCTACAATTATTGCTAATGAAGTGTCATTTCGCATTTGTGTGGGCATTTGTTTAAGGAGAAGACTATATCACTTTAGTTATTTGGATTACATATAGGAAAAACTACTATTTGTTGGATGGAGAGGAATAGAAGTATCTTTGAAGAAAAGAATTTTAGTTTTCGTAGACCTTTGGGACCTTATCAAATGCCTAGCTTCTATTTGGTGTAACTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTACTTTTTGACAATTGGTTGCCTTTCAAGCCCTGTGATGGCTAGGATGGCTTATCTTCCTCTTTTGTTTTGATCTTTCAGTGATGTCTATTTCGGTTTCAATTTGAGAAAAGAAAGTGATTATACAAGAAGGTTTCATATCTTTTCTTTGATCGGAGTTGTTTTGCAATGGCAATGCCTGGTCATTTTGCAAAGTATGTTGACTAAGTATTCTGTGTATGAGATCTTTAGTTGGAATCATATCTTTGATAAGGTTGAATTGTTTTGCTTGTGTAAAGATAATCAATTAGAGTGCATAGGTAGTGAAGAAAGTTCCCTGAGCCCTCAGGATATGAAGATACATATGTTGACTTGATTATTACTAAACCCTACTTTTCTTTTCTCAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACGTAATAATCTTTTCTGCAATTGTTCAACTGTGCCAATTCTTTGTTTTTGTTTAAATTTTATTCATGCAAATTTGCTGTAAATAGAGGGATTTTAAAAATATGTTTTTTGAACTTTTATCATCAGCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGTAACCGATTGGTGAATGAAAATGTTTTACTCGAGTCATTGTTCCTATTTATCTTTGTTTGTCTTGACATATTGTATTTCTTGTGGATTTAATGGCTAAGTCGAGGATGTATAGTTAAACCCAACCTCCTTCTAGGTTGTTGGATTGGTCTAATGTTAGAGATCTATGGGAAAAAGTTGAAGATTGAAATTATTAAGGTTTTATAGCGATTTTCCTCTTCTTTCGTGCTCTCTTTTGAACTTCAGATTTTTACTTCAAATAAAATAACAGCAGTATGCTTCTCTATGTTGTCACTTCTTGTACATCCTTGAAACGATTGGACCTATTAACAAAAATTTTCAATTATATTTTAACTGAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGTAAGTTCCATTAGCGTATGCTCTCTGTGACTGGACTGCCCAATTTTGAATGCTATTGCTATTTTCTTTCCGCCCCACTCTAATCAATATGTTTAATGGTGAATGTTGCTCACTCAACAGGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTATGACATAACCTAGTCTATTACTTTTTTCCACTTGCTTATATATATATTTTTTCGTAAAAGAAAAAGTACAAGATGAATATGGTGACTGGTCGTTTGCTGTCCATACAAAAGCCATTGCATGAGTGAAATAAGAGTAGGGGACATTTTCTAAGCATTGTAGAAAGAAGACTGTTTGACTGTACTTTTAGTTTTAAGTTTTTTTTTTTAAAATATCTTTAAAAAATGTTTTTTATTTTTTGTATCCTTAAAAATTTATTTGGTTGCACTACATTCAAATTTGATTCAATTACTTACAATTTTTTTTTTTTTTTTTGTTCTTACATAGTTTGAAGATTTCCTGTCAATCACTTTAAAGTCAGAGTTTTAAAATTAATCCAATTTTTTAAAATGCTTTTATTTGTTATGATTTTAAAATAACACTTAATATAATCTAAATAATCTAAAATCACTCAAAATGCTGTATTAAACCCACTTTAAATGAGTACTTTTTCAAAGGTACTTTTTGAAAAAGTGTTTATTATTATTATTATTATTATTTTTTTTTGTCAAAAGCTGTTTCAGGGCACTGTTAGAATGATAACAATGTATGAAATATAATAATGTTTTCTACCACCCTCATTTTTGTAAATAATAAATTTCTGTTGTGAGCTTGTTGTCACGTACCTTGATGTCTTCTTTTATCTGTAGGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTAATTCTTGTTATATATATATATATATAAATTAATATATCATAGATTTGATAATTTGTCTAAACACTTGCGTGATTAATCTTACAATAAATGGTTTCATCTACGCCCACCAATTATAATTTATTCAAGATTGACTTTTATCAGCTAGATTGATTAAAGCACCATTCAGTATTGGTGGCGCAGATAAAATCTTTTAACTGTTTATGATAAACTTTATGGACTTACTCAATTCCATCTATTGTCGTCTAACCTTTGCTCTGCTTTATTCTGGATTCAGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGTGAGCTCATTCTCTTTTCTTATATGTTTGAGAACAACTTTGGTACTTTGTGGCATATGCTTAATGGAGTTACGTTTTACCATGCAGACATCATAGGTTGAAGTATAACTATCATGCTAAAAGTACTGTAGTTATTTGAATTATGACATCTTTATCTACTATACGGAAATAGAGTGGTTGCAGTATAATTAACGATGAGTTGGTGTATCTTCCAGAAAAGATATTTCTTAATTTGTCTTATCCCGTAAGAGTTTTTTTTTTGTGTAACATGGATGGGGAAGGTGTTGTGTATTACTCATTTTCTGCCTCTTTGTTAGCAATGACTTTATGTTAGTATGGATAGTGAATAGCGTGGTATTTTAAATTTAGTTTTACCTTCTATTAACATTTTCATCTGTTGAACATTGATTTTTAATGCTTGAATATTCCACTGCTCTGTTTTTAGTTTTACCTTTTGTTATTTATTTGTTTTGAGTGTCCCGTGTTTCACTTCGATCAAAAGCTTTGTTGCATTCAACATGGAGTGTGCCTTGTGCATTGAAATGCTATCTTGTGCAGTTTATTTGAGTCAAGTGTTTGGCGAAATTTAATCTTGATGCACAAATGCTAGTGCTACCTTTAATCTTTGCCTTCACTTTGAGAATATTGTATTTGGTTATATTGTTTTCAAATTATTTTGAAATTTGAAATATAGTTTTACCTCTCTTATTATTGATGTGAGCATGTGGGGAGAGTTATTATTTTATTTATTTTTGCCAACAAGAGCATATCTCAATTGGTTTAAGTATTATATCTTTTATCAAAAGGCTAGAGGTTTGAATTCCCACCCCATATATTGCCAAGGAAATTTGAAAAAAATAGTTGGGTTTTTTCCCCTAAAAGTAATGGTTCTTTCATTTTGGCATTATACTAGGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGGTTTGTTTTGATGAACCTTTCTCTTGTCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCTTTTTGTTGCTTTTATACATTGTGATGGTTGATGGTGTCGTCCTTTTGTCACTTGCGTTGGAAAATCGATGATCACACTGTGTTCTATCTGGTTGTCGATGAAGAGAACATGCATTGTTAACTCATGGTGGATGACCCCCTCTTAGGAAATTATAGTCTAGGATGACGCATCTCAGGCAATAGTATTTCACTTTATTGCTGATCTTGTATTATAAATGCCGGAGAGTATGCTCCCTCCTTGTATCTGTGCACATACCGATGATGCTGTCAGAGCACGTTAACAAGTAGGTCAATGGTACCTCTCTCTCTTTCACATGTTGTCCATAAATGGCTATTACTGTCAGCTGCAATTTTGGGGTGCATTTGAAATCGTTTTTTGAGCTCTCATTTGCTCATTTGGGTAGAAGCAAACGTCAGAATCATATTGCTAAGTCAAAATCTTGGTTTAATCTTTTTGGATCTTGTATCATTAACATTCTTAATCAGAGGCACTTTGCTCAAAATTCTCGAGGCCTTTTGTTCGACACTCCTCTTAGGCAAATGCCTGTGTTGTTGTCCCTTGGTCATAATGTGGTTGGCTGCTCCTAATACATATTTCCTATAATAAATAAACAAAAAGAAAGAAAGATGACGCAACCATACATTTTGCATGGATATGGAGATACATGGTAGATACATGCATATGGAGATTATTCAGCTTATTCTTTTACGAGTCTTTGTATAGTTATCCGGTAGAACTGTATGTATCCACGAATCAACTACTTTTGCATTTTGCATGTTGCAACCATACATTTTCTTTAATTTTTTGAATGTGGGAGCGTAGTTATCTTGTTTATCCAGTCTATTTACTTGCTTTTACCTTTGTCCTATTTTCTTCAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTATACCTTGATCTCCGCAATTCATTTTGTTGATCTCGAGAAGTTCAATGTTCCTTAGCTTTATTTCTTGACTGCCAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGTGATTATCCTTTCAATTCAATTTTTTTACATTGCATATCAGTTTAGGAATAAATTAGATTTCTTAATTCCTTTCTTTGCATCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGGTGATCGCTTCTCTTTGTTAATAATTCAGTATTTTTTTACTCGTTGAAAGTAATATTTGTGAGTTTTAGTCTACTTGGAGATGCTGTCAAAAATTTTAAGATCAATATGAGTTTAAGGCTATTAACCTATAGGGATGAGAGCGTGCTACTGCTGCCTCGATAATATTTTCATACGAAGATTCGTATCATTCAAGTTGAAATCTAATATTTTCCCCTTGGAGAGGTTTTCAAACCGTTATATTACACCTACAGTTATTAAAGCACCAATATCCTGTTGTGAGTTTGGTACAATTTTTGGGTCACTTCGTCCAGAATTTCATTAAAATCACTTAAAAAGCACCTGTAAAGTATGTTTTAGGAAAAAAAAAACCATATAACTATTGCTTCTTCAAAAGACTAGTTGGAATGCTTCTCTTAGAAAGATTTTATTTAAAGCCATCCCAAAGTCAACCTAGAAATTGTCACTATTCTTTTGTTTAGGAAAATGAACTTTGTACCTCTAGTTGGTTCTATCCACAAAGATTTTGGATTCTTTCACGAGGATTGAATTATAGCAATTTATATGAGGTCATGTATCCATTTCTGCAGTCAATTCTTTTGCTCTGCTTAATATCTATCTTTTCTCAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTAAGTCTTGAACTCACCTTGTGAATCAACTGCCTTACTTTTTACCTCATGTGATGCTCGAGTTACAGTAGAGTGTAGAACCCTGACCGATGACGCGTTTCTTATGGTTTTTCTTAATACAACTATCAGGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAAATCATATATAAGGTTCGTGGTAGTTTGGATGATTATATATGATCAATTTTGTATTTGCTTATTAGTTGTATCATATGTTGTTTTGTTCAATGGGAGCTGCTTCCCTCATACTGTATATGAACACACGCACACAGTTCAGGTCATTACATA

mRNA sequence

CTTCTTCACGTCGTCTCCTCATCACTTGGTGTCGCCACTGCCGCCGCCGCCGCCTCCTCCAAGCGGTCCTGCGCCGATTTCTACACTGTTGTTGTTACTGGTTGCATCTAGATCCTGTAAGTTTCACGTGGGTATTCAGAATCCTCATTGATCCGATTGCCTCAAAGTTACAATGGTTGATTCCACGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAAATCATATATAAGGTTCGTGGTAGTTTGGATGATTATATATGATCAATTTTGTATTTGCTTATTAGTTGTATCATATGTTGTTTTGTTCAATGGGAGCTGCTTCCCTCATACTGTATATGAACACACGCACACAGTTCAGGTCATTACATA

Coding sequence (CDS)

ATGGTTGATTCCACGTCTAGGATATGTGTGAAGAATTTGCCCAAGTTCATAGATGACAATCGCCTTCGTACTTTGTTCTCTGAAAAAGGAGAGATTACAGATGTTAAGCTTATGCGGACCAAGGATGGGAAGAGCCGACAATTTGCTTTCATTGGGTTTCGCACGGAACATGAAGCTCAAGCAGCTATACATTACTTCAACAAATCTTTTCTCAGTACTCACAGGATCACCTGTGAGAGTGCATGGAAAGTTGGGGATCCAAAAATTCCCCGACCTTGGAGTAAACATTCGAAAGAAAAGAAGGGCATTAAGGATGGGATGGAAGTAGAATATGACAAAAATGTAAGTTTTTTGGGGTCTAAAGAAGAGGGTGATGACCTTAAATTGAGTATTCAAGATGATGACCCTAAAATCCAAGAGTTTCTTCAAGTGACACAAACTCGGGTTAATTCAAAAGTGTGGGCAAATGACATTTTGATGGCTCCAGAAACTGATCAAAACGGAAAAGGAAAGGAGAAACCAAGTCACATGAAAAAGATAGATGGAAAAAAACTGAAGTTGGTGAATGTTGATGGAGATAAAGCTGAGGAAATGAAAACTTCATTGCATACTAACTCTGCCCATGATGATAAAATTTCGGATATGGAATATTTTAACAGCAGGGTAACGAAGAAATGGTCAGACTCACAGACCAGTGATGACGATAATATTGATGAGGATGCTGAAAATGAGAATGAACCCATAAAGAAAAAATTGGAGATGAAGGATGTTCAGATGGTAGATTCCAAGTTACCACTAGAAACAGAGGCCGAAGAAGAGGACCATTCCAATCATTGTGATGCAGATTTACTCCACATGGAGGAATCCTCTTCAATTCTGGAAGATAAGAAGGATGAAATGCTGGAGAATGGGAGACTCTTTGTTCGTAATCTTCCATATGCAGCGACCGAAGAAGAGTTAGAAGAGCACTTCGGAAAATTTGGCACTGTCTCGGAGGTACATCTTGTAGTTGATAAAGATACAAGACGTTCTAAAGGCATTGCTTATATCCTTTACAGTCATCCAGAATTTGCAAAAAGGGCACTTGAAGAATTGGACAGTTCAATTTTCCAAGGGCGATTATTGCATGTCATGCCCGCTCAACTGAGGAAAACATTCGAGAAACCAGAGGAAAATATTTTAGAGAACCAAAGGTCAAAATCCTTCAAGAAAAAGAGAGAGGAAGAGAGAAAAGCGTCTGAAGCTAGTGGCAATACAAGAGCATGGAATAGTTTATTTATGCGCCCTGATACAGTTGTTGAAAATATTGCTAGAAAATATGGTGTTAGTAAGGGTGAGTTATTGGACCGGGAGTCTGATGACCTTGCTGTACGAGTTGCTTTGGGTGAAACTCAAGTAGTTGCAGAGACAAAGAAGGCTCTCACAAATGCTGGAGTAAATGTTGCATCTTTAGAGGAATTTGCTTCTGGTAAAGTTGATGGACACAAAAGGAGCAATCATATTCTCCTTGTGAAAAACTTGCCTTATGGTTCTTCCGAAGGAGAACTTGCAAATATGTTTGGGAAATTTGGGAGTCTGGACAAGATCATTCTTCCACCAACAAAGATATTGGCTTTGGTTATTTTTCTTGAGCCATCTGGAGCCCGTGCTGCTTTTAAAGGTTTAGCATACAAGCGTTACAAGGACGCTCCGTTATATTTGGAATGGGCTCCTGACAATATTCTTAGTCAAAATCCAATGGATGGCAATGTGAAGGACGAGAAAGTTGGTGAAGGTGATGCTAGGAGGGTGATATTGGAGCAGGCAGTGGACGGAATATCAGATGTTGATTTTGACCCTGACAGGGTTGAGTCACGATCTCTTTTCGTCAAGAACCTCAATTTTAAAACGACTGACGAAAGTTTGAGAAAGCATTTTAGTGAACACATGAAAGGGGGAAGAATATTGAGCGCCAAGGTAAAGAAGCATATAAAAAAAGGACAGCATGTTTCAATGGGTTTTGGATTTTTGGAATTTGATTCGGTGGAGACTGCCACAAGTGTCTGCAGTAATTTGCAGGGAACTGTTTTGGATGGCCATGCCATCATGTTACAAATGTGTCATGTCAAGAAGGATAATCAAGGGCAAAGAAAAGTAGAGAAGGAAAAGAGTTCGACAAAGTTACTCGTTAGAAATGTGGCCTTCGAGGCGACAGGGAAAGATCTAAGACAACTGTTCAGTCCATACGGACAGATTAAGAGCTTAAGACTGCCAATGAAGTTCGGAAAGCATAGAGGCTTTGCATTTGTGGAGTTTGTAACAAAGCAGGAAGCACAAAATGCATTTCAAGCACTTTCAAACACCCATTTGTATGGTCGGCATCTTGTCTTAGAGAGAGCGAAAGAAGGCGAGAGCTTGGAAGAACTGAGGGCCCGAACGGCTGCTCAGTTTAGCAACGATCAAGACAAGTCTCAAAATCCAATTTTGTCTAAGAAGAGGAAGCAGAGGGCTGAGTTTGATGAAGAGAGTATGGAGTTTGAAAGGACTGAGTAA

Protein sequence

MVDSTSRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHYFNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKKDEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVILEQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKHRGFAFVEFVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSKKRKQRAEFDEESMEFERTE
Homology
BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match: Q9Y4C8 (Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3)

HSP 1 Score: 463.4 bits (1191), Expect = 5.5e-129
Identity = 336/980 (34.29%), Postives = 504/980 (51.43%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SR+ VKNLP  + + R R LF+  G +TD  L  TKDGK R+F FIGF++E EAQ A  +
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPWSKH----SKEKKGIKDGMEVEYDKNVSFLGSK 125
           FNKSF+ T RIT E     GDP  PR WSKH    S+ K+  KD    E  K+      K
Sbjct: 62  FNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPPKDSTTPEIKKD-----EK 121

Query: 126 EEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPS----HM 185
           ++    +L    +D + QEFL V Q R  +  WAND L A    +  KGK KP+    + 
Sbjct: 122 KKKVAGQLEKLKEDTEFQEFLSVHQRRAQAATWANDGLDA----EPSKGKSKPASDYLNF 181

Query: 186 KKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNI 245
               G++ +      D  EE   SL   +A   ++SDM+Y  S++ K  S S + ++++ 
Sbjct: 182 DSDSGQESEEEGAGEDLEEE--ASLEPKAAVQKELSDMDYLKSKMVKAGSSSSSEEEESE 241

Query: 246 DE--------DAENENEPIKKKLEMKDVQ--------MVDSKLPLETEAEEEDHSNHCD- 305
           DE        +AE E+      L+ +D +            K P E  AE E  +N  + 
Sbjct: 242 DEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEP 301

Query: 306 -----------------------------------------------ADLLHMEESSSIL 365
                                                           D  + EE    L
Sbjct: 302 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL 361

Query: 366 E-----------------------------------------DKKDEMLENGRLFVRNLP 425
           +                                         ++++++ E+GRLFVRNLP
Sbjct: 362 KCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLP 421

Query: 426 YAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQG 485
           Y +TEE+LE+ F K+G +SE+H  +D  T++ KG A+I +  PE A +A  E+D  +FQG
Sbjct: 422 YTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQG 481

Query: 486 RLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTV 545
           R+LHV+P+ ++K   +    +     S S+KKK+E + KA+ AS +   WN+LFM P+ V
Sbjct: 482 RMLHVLPSTIKKEASEDASAL----GSSSYKKKKEAQDKANSASSHN--WNTLFMGPNAV 541

Query: 546 VENIARKYGVSKGELLDRES-DDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGK 605
            + IA+KY  +K ++ D E+   +AVRVALGETQ+V E ++ L + GV++ S  + A+  
Sbjct: 542 ADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA-- 601

Query: 606 VDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAA 665
               +RS  ++LVKNLP G+   +L   FG FGSL +++LP   I A+V FLEP  AR A
Sbjct: 602 ----ERSKTVILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGITAIVEFLEPLEARKA 661

Query: 666 FKGLAYKRYKDAPLYLEWAPDNILS-------------QNPMDGNVKDEKV---GEGDAR 725
           F+ LAY ++   PLYLEWAP  + S               PM+ +  + +    GE    
Sbjct: 662 FRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEKDPAEPETVPDGETPED 721

Query: 726 RVILEQAVDGIS--------DVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGR 785
               E+  D  S        + + + + +   +LF+KNLNF TT+E L++ FS   K G 
Sbjct: 722 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFS---KVGT 781

Query: 786 ILSAKV-KKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDN 839
           + S  + KK  K G  +SMGFGF+E+   E A      LQG V+DGH + +++       
Sbjct: 782 VKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKP 841

BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match: Q54PB2 (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.4e-126
Identity = 309/893 (34.60%), Postives = 474/893 (53.08%), Query Frame = 0

Query: 4   STSRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAI 63
           S +RICVK LPK + D R +  F + G +TD K+++ KDGKSR F FIGF TE  A+ A+
Sbjct: 2   SNTRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK-KDGKSRLFGFIGFSTEQSAKNAL 61

Query: 64  HYFNKSFLSTHRITCESAWKVGDPKIPRPWSKHS---------------KEKKGIK---D 123
              N +F+ T +I  E+A    +    RPWSK+S               KEKK +K   D
Sbjct: 62  S-LNGTFIDTSKIVVETATVASETTENRPWSKYSIGSSSNKRLTEMEKEKEKKELKRKQD 121

Query: 124 GMEVEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWAND------IL 183
            +E + +K       K   + L  +  ++DP+ QEFL +   + N KVW ND      I 
Sbjct: 122 KLEQQSNKK----QKKSHTNSLLDAELENDPEYQEFLNLVAPQANRKVWENDDKEIGKIN 181

Query: 184 MAPETDQNGK--------GKEKPSHMKKID---GKKLKLV---NVDGDKAEEMKTSLHTN 243
              E  + G+        GK   S  KKI+   GK   L+   + D    E++   + T 
Sbjct: 182 RGEEEGEEGEENDNQVEDGKLPFSGKKKIELDHGKNKDLLVFEDADASDEEDLYEDMPTA 241

Query: 244 SAHDDKISDMEYFNSRVTKK---------WSDSQTSDDDNIDE---------DAENENEP 303
               +K  D++   +   KK         W     S++D I E         + E+E E 
Sbjct: 242 PKKQNKKDDVDSIINEKKKKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEEESEEED 301

Query: 304 IKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILE--------DKKDE 363
           +  K   KD   +D     + E +++   N  D D    ++ S I           K+DE
Sbjct: 302 VNNKENKKDKMKIDDNKENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDE 361

Query: 364 ML-ENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFA 423
            + E+GR+FVRNL Y+  EE+LE+ F KFG +SE+H+ +D D+++SKGIA+ILY  PE A
Sbjct: 362 DVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENA 421

Query: 424 KRALEELDSSIFQGRLLHVMP--AQLRKTFEKPEENILENQRSKSFKKKREEERKASEAS 483
            +AL ++D  +FQGRL+HV+P  A   K F + ++N        S   K E+E+K    S
Sbjct: 422 VQALNDMDGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTS 481

Query: 484 GNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTN 543
           G+T  WN+LFMR D +V ++A +Y +++G+LLD    DLAVR+ L ET V+ ETKK L +
Sbjct: 482 GSTHNWNALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLED 541

Query: 544 AGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKI 603
            GV +  +         G KRSN +LLVKN+P+ + E EL  +F KFG L +++L P + 
Sbjct: 542 QGVIIQDIGN------KGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPART 601

Query: 604 LALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILS----QNPMDGNVKDEKVGEG 663
           +AL+ ++ P+ A+  FK LAY ++   PLYLEWAP+ +         +  + K EK  + 
Sbjct: 602 IALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSEKSSDS 661

Query: 664 DARRVILEQAVDGISDVDFDPDRVESRSLFV--KNLNFKTTDESLRKHFSEHMKGGRILS 723
              +  +E      +         ++ + FV  KNLN+KTT+E+L   F        +  
Sbjct: 662 SNDKKEVESTTKTAATTTTTKKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNI 721

Query: 724 AKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQR 783
           A         + +  GFGF+EF S + A      L G+ +DG+ I L++    + N  + 
Sbjct: 722 ATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEI 781

Query: 784 KVEKE-----------------KSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMK 806
              +E                 K S+K++++N+ FE+T K++R+LF+ YG+I+S+R+P K
Sbjct: 782 NKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKK 841

BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match: Q8R3C6 (Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-121
Identity = 316/966 (32.71%), Postives = 486/966 (50.31%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SR+ VKNLP  + + R R LF+  G +TD  L  TKDGK R+F FIGF++E EAQAA+++
Sbjct: 2   SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNH 61

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGD 125
           F++SF+ T RIT E     GDP  PR WSKH+++    K   +     +      K+   
Sbjct: 62  FHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKGPS 121

Query: 126 DLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMA----PETDQNGKGKEKPSHMKKID 185
           DL+     +D K QEFL + Q R     WAND L A     +T  +       S      
Sbjct: 122 DLEK--LKEDAKFQEFLSIHQKRTQVATWANDALEAKLPKAKTKASSDYLNFDSDSNSDS 181

Query: 186 GKKLKLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSR-----VTKKWSDSQTSDDD- 245
           G++ +      D  EE    L   +A   ++SDM+Y  S+     V+ +  D + S+D+ 
Sbjct: 182 GQESEEEPAREDPEEEQ--GLQPKAAVQKELSDMDYLKSKMVRAEVSSEDEDEEDSEDEA 241

Query: 246 -NIDEDAENENE---------------------------------PIKKK---------- 305
            N +E +E E E                                 P+ +K          
Sbjct: 242 VNCEEGSEEEEEEGSPASPAKQGGVSRGAVPGVLRPQEAAGKVEKPVSQKEPTTPYTVKL 301

Query: 306 -------LEMKDVQMVDSKLPLETEAEEEDHSN---HCDADLLHMEESSSILE------- 365
                   E   ++ +    P+        H N   +   DL   EE    L+       
Sbjct: 302 RGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCNRDYMG 361

Query: 366 ---------------------------------DKKDEMLENGRLFVRNLPYAATEEELE 425
                                            ++++++ ++GRLFVRNL Y ++EE+LE
Sbjct: 362 GRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLE 421

Query: 426 EHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQ 485
           + F  +G +SE+H  +D  T++ KG A++ +  PE A +A  E+D  +FQGR+LHV+P+ 
Sbjct: 422 KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 481

Query: 486 LRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYG 545
           ++K     E +   N    S+KKK+E   KA+ +S +   WN+LFM P+ V + IA+KY 
Sbjct: 482 IKK-----EASQEANAPGSSYKKKKEAMDKANSSSSHN--WNTLFMGPNAVADAIAQKYN 541

Query: 546 VSKGELLDRES-DDLAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNH 605
            +K ++ D E+   +AVRVALGETQ+V E +  L + GV + S  + A+      +RS  
Sbjct: 542 ATKSQVFDHETRGSVAVRVALGETQLVQEVRSFLIDNGVCLDSFSQAAA------ERSKT 601

Query: 606 ILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRY 665
           ++L KNLP G+   E+   F +FGSL +++LP   I A+V FLEP  AR AF+ LAY ++
Sbjct: 602 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 661

Query: 666 KDAPLYLEWAPDNILSQNPM-----------DGNVKDEKVGEGDARRVILEQAVDGISDV 725
              PLYLEWAP  +    P               V+ E V + +  +  +E A      +
Sbjct: 662 HHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAEVEQETVLDPEGEKASVEGAEASTGKM 721

Query: 726 DFDPDRVESR--------SLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKV-KKHIKKG 785
           + + +  E          +LF+KNLNF TT+E+L+  FS   K G I S  + KK  K G
Sbjct: 722 EEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFS---KVGAIKSCTISKKKNKAG 781

Query: 786 QHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCH----VKKDNQGQRKVEKEK 839
             +SMGFGF+E+   E A      LQG  +DGH + +++          +  +++V K++
Sbjct: 782 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQ 841

BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match: Q5AJS6 (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MRD1 PE=3 SV=2)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-114
Identity = 277/858 (32.28%), Postives = 469/858 (54.66%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SR+ VK LPK+  + +LR  FS++G++TDVKLM+ ++G+SR+FAFIG+++   A+ A+ Y
Sbjct: 2   SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPW-SKHSKEKKGIKDGMEVEYDKNVSFLGSKEEG 125
           FNKSF+ T RI  E A    DP +P  +  K  +E++ +KD  E   ++ +     K++ 
Sbjct: 62  FNKSFIDTARIEVEFAKTFSDPTVPLSFKEKRKREEQKLKDEQERLLEQELRAQAKKQKT 121

Query: 126 DDLKLSIQDD---DPKIQEFLQVTQTRVNSKVWANDIL---MAPETDQNGKGKEKPSHMK 185
                 I D+   +PK++E+++V +     K WAND +       + Q+ +     ++  
Sbjct: 122 KSTS-EIDDEIASNPKLREYMEVMKPSHQVKSWANDTIADGSGGPSVQDLENALNGNNES 181

Query: 186 KIDGKKLKLVNVDGDKAEE------MKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTS 245
            +D   +++VN   D +++        ++ H  +  +++  +M       T + +  +  
Sbjct: 182 PVDKSNIEVVNTVEDASDDEYNDFKELSNKHGENEDEEEEEEMMSLGDLPTNEENKDKNE 241

Query: 246 DDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSI 305
             +N+   A NEN    + L+ +  ++ ++    E   E ++ +   +A      E    
Sbjct: 242 SGENL---AANENISDLEWLKSRSTRIKENGEVPEIVPEVKEVNEVTEATQQSDNEPEMT 301

Query: 306 LEDK-KDEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYIL 365
            E++   ++ E GRLF+RN+ Y A+EE+    F ++G + EVH+ +D  T +SKG  Y+ 
Sbjct: 302 PEEQIAHKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 361

Query: 366 YSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERK 425
           +   E A RA   LD  IFQGRLLH++PA  +K     E ++    ++   KK+RE ++K
Sbjct: 362 FLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRLDEFDL----KNLPLKKQRELKKK 421

Query: 426 ASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETK 485
           A +A+    +WNSL+M  D V+E++A K GV+K +L+D E+   AV+ AL E  V+ + +
Sbjct: 422 A-QAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVKQALAEAHVIGDVR 481

Query: 486 KALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL 545
           K   + GV++ S         D  +R + I+LVKN P+G++  E+  +F  +G L ++++
Sbjct: 482 KYFEDRGVDLTSF--------DKKERDDKIILVKNFPFGTTIDEIGELFSAYGQLKRMLM 541

Query: 546 PPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNV---KDEK 605
           PP   +A++ F +   ARAAF  LAYKR+K + LYLE  P ++ ++ P    V    +++
Sbjct: 542 PPAGTIAIIEFRDAPSARAAFSKLAYKRFKSSILYLEKGPKDLFTREPTTNEVATIPEQQ 601

Query: 606 VGEGDARRVILEQAVDGISDVDFDPDRVE--SRSLFVKNLNFKTTDESLRKHFSEHMKGG 665
             E      I    + G S  D + + V+  + ++FVKNLNF TT ++L   F + + G 
Sbjct: 602 QNEHAVEAKISANEILGESKEDDEIESVQGPTVAVFVKNLNFATTVQALSDLF-KPLPGF 661

Query: 666 RILSAKVKKHIK-KGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKD 725
            + + K K   K  G+ +SMGFGF+EF + E A    S L G VLDGH + L++ H +  
Sbjct: 662 VVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGT 721

Query: 726 NQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKH-RGFAFVE 785
                 ++K   S+K++++N+ FEAT KDL +LF  +GQ+KS+R+P KF +  RGFAFVE
Sbjct: 722 GTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVE 781

Query: 786 FVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQN----P 839
           F   +EA+ A   L   HL GR LV++ A++     E+      +    Q  +QN     
Sbjct: 782 FNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDAENAEVEIERMTKKVKKQVATQNLAAAR 841

BLAST of CmaCh16G005660 vs. ExPASy Swiss-Prot
Match: Q4PC17 (Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=MRD1 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.6e-114
Identity = 288/870 (33.10%), Postives = 464/870 (53.33%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SR+ V+ LP ++ D RLR  FS+KG +TDVKLMR  DG SR+F F+G+R+E EAQ A+ Y
Sbjct: 2   SRLIVRGLPSYLTDARLREHFSQKGAVTDVKLMRRPDGTSRKFGFVGYRSEQEAQQALDY 61

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKK---------GIKDGMEVEYDKNVS 125
           FN++F+ T RI+ E A K+GD ++     +    +             D  + + DK+ +
Sbjct: 62  FNRTFIDTSRISIELAKKIGDEELVHQREERRNRRNAGAGPEGSASTSDARKRKADKSDT 121

Query: 126 FLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKP-- 185
               +EEG   K   +      +EF+ V Q +   K W N+  +  +T Q+    E+   
Sbjct: 122 ---QQEEGSGKKKPKKGGAISFEEFMSVMQPKAKRKAWQNEDALPEQTMQDIVAPEEAIQ 181

Query: 186 -----SHMKKIDGKKLKLVNVDGDKAE----EMKTSLHTNSAHDDKISDMEYFNSRVTKK 245
                  +KK D         +   A+      +T     +A+D  ++D EY   R+  +
Sbjct: 182 KKAARKALKKADAAAAATATAESTAAQPDSGREETPEPDAAANDVGLTDEEYMRLRMKHR 241

Query: 246 WSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNH-----CD 305
                 +D D +++ +         + E  D +  D     +++ E ED   H     C 
Sbjct: 242 VG----TDLDTLEQSSSG------PEFEQSDNEKDDDDAAADSDPESEDEPIHDQGFECK 301

Query: 306 ADLLHMEESSSILEDKK--DEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVD 365
              +  +   +  +D+K  D+++E+GRLF+RNLP+AA+ +E+   F  FGTV +VH+ +D
Sbjct: 302 QAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLD 361

Query: 366 KDTRRSKGIAYILYSHPEFAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQR 425
           K T+ SKG+A++ +S P  A  A    D S FQGRLLH++PA  +    +       +++
Sbjct: 362 KQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDALAE-----TGSKK 421

Query: 426 SKSFKKKREEERKASEASGNTRAWNSLFMRPDTVVENIARKYGVSKGELL----DRESDD 485
           + + K+ R E++K          W+ L+M  D V  +IA + GV+K ++L    +  +D+
Sbjct: 422 TATLKQARAEQKKQDATKDFN--WSMLYMSSDAVASSIADRLGVNKSDILNPGANGGADN 481

Query: 486 LAVRVALGETQVVAETKKALTNAGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEG 545
            AVR+AL ET+++ ETK+ L   G+NV   + F   K     RS+  +LVKN+PYG+S  
Sbjct: 482 AAVRLALAETRIIQETKEFLAQQGINV---DAFQGAK---GPRSDTTILVKNIPYGTSAE 541

Query: 546 ELANMFGKFGSLDKIILPPTKILALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNI 605
           E+  +FG+ G +DK+++PP+  +A+V     + AR AF+ +AYKR+K   LYLE AP  +
Sbjct: 542 EVEKLFGEHGEVDKVLIPPSGTIAVVEMPVVNEARLAFRAIAYKRFKGGILYLEKAPVGL 601

Query: 606 LSQNPMDGNVKDEKVGEGDARRV-ILEQAVDGIS-DVDFD--------PDRVESRSLFVK 665
           L+Q+         KVGE   ++  I+ +++D  +  VD D         + V+  +L+VK
Sbjct: 602 LTQH---------KVGEKVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEAVDGATLYVK 661

Query: 666 NLNFKTTDESLRKHFS--EHMKGGRILSAKVKKHIKKGQHVSMGFGFLEFDSVETATSVC 725
           NL+F TTDE L   F         RI +    +  + G  +SMG+GF+ F S++ A +  
Sbjct: 662 NLSFSTTDERLTAFFHGLSDFAFARIQTKPDPR--RPGARLSMGYGFVGFKSIDAARTAQ 721

Query: 726 SNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLVRNVAFEATGKDLRQLFSPY 785
             + G VLD H +++     +++ +          STK+L++N+ FEAT +D+R LFS  
Sbjct: 722 KAMDGKVLDAHTLVVTF--ARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQ 781

Query: 786 GQIKSLRLPMKF-GKHRGFAFVEFVTKQEAQNAFQALSNTHLYGRHLVLERAKEGESLEE 828
           GQ+KS+RLP KF    RGF FVE+ T +EAQ+A +AL +THL GRHLVL+ +    S ++
Sbjct: 782 GQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWSHLASSTQQ 832

BLAST of CmaCh16G005660 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 782.7 bits (2020), Expect = 2.9e-226
Identity = 446/830 (53.73%), Postives = 578/830 (69.64%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SRICVKNLPK + +++LR  FS+KGEITD KLMR+ DGKSRQF FIGFR+  EAQ AI Y
Sbjct: 2   SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPWSK--HSKEKKGIKDGMEVEYDKNVSFLGSKEE 125
           FN ++L T  I  E A KVGD   PRPWS+  H KE++  K   E   D N    G K  
Sbjct: 62  FNNTYLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSEGLKDGNAK--GGK-- 121

Query: 126 GDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGK 185
               K   + DDP+ QEFL+V Q R  SK+W+ND+ + P  ++ GK K     +KK D +
Sbjct: 122 ----KRKAEVDDPEFQEFLEVHQ-RSKSKIWSNDMSIPPAPEETGKEKVL---VKKAD-E 181

Query: 186 KLKLVNVDGDKAEEM----KTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDE 245
           ++    V+  KA++     KT      A  D +SDMEYF SR+ K  SDS++ ++     
Sbjct: 182 QIVSNGVEPKKAKKSSDTEKTKKSKVVAASDDVSDMEYFKSRIKKNLSDSESDNESEDSS 241

Query: 246 DAENENEPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKK-- 305
           + E  ++  K + + +D  +     P++ + E        D D + +E    + ++ K  
Sbjct: 242 EDEAGDDDGKAETDGQDADI--RYFPIDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAV 301

Query: 306 -DEMLENGRLFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPE 365
            D++L+ GRLFVRNLPY ATEEEL EHF  FG +SEVHLV+DK+T+RS+GIAYILY  PE
Sbjct: 302 SDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPE 361

Query: 366 FAKRALEELDSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEAS 425
            A RA+EELD+S FQGRLLH++PA+ R+T +K   +   +   K+FK+KREE+RKASEA 
Sbjct: 362 CAARAMEELDNSSFQGRLLHILPAKHRETSDKQVND--TSNLPKTFKQKREEQRKASEAG 421

Query: 426 GNTRAWNSLFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTN 485
           G+T+AWNSLFMRPDT++ENI R YGVSK ELLDRE++D AVR+ALGET+V+AETK+AL  
Sbjct: 422 GDTKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPAVRLALGETKVIAETKEALAK 481

Query: 486 AGVNVASLEEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKI 545
           AGVNV SLE+FA+   D   RS HILLVKNLP+ S+E ELA MFGKFGSLDKIILPPTK 
Sbjct: 482 AGVNVTSLEKFATRNGDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPPTKT 541

Query: 546 LALVIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILS-QNPMDGNVKDEKVGEGDAR 605
           +AL +FLEP+ ARAA KG+AYKRYKDAPLYLEWAP NIL  +N  D N +   + E   R
Sbjct: 542 MALAVFLEPAEARAALKGMAYKRYKDAPLYLEWAPGNILEPKNLPDTNEERSDIEENGVR 601

Query: 606 RVILEQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKK 665
           RV LEQ       V+ DPD  ES  L VKNL+FKTTDE L+KHF++ +K G+ILS  + K
Sbjct: 602 RVNLEQ------QVEIDPDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIK 661

Query: 666 HIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKE 725
           H K  +++S G+GF+EFDSVETATSV  +LQGTVLDGHA++L+ C  K+ ++  +   K+
Sbjct: 662 HKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKD 721

Query: 726 KSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMK-FGKHRGFAFVEFVTKQEAQNA 785
           K  TKL V+N+AFEAT ++LRQLFSP+GQIKS+RLP K  G++ G+AFVEFVTKQEA NA
Sbjct: 722 KPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 781

Query: 786 FQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSK 825
            +AL++TH YGRHLVLE A +  S+E +R R+AA+F  + D ++    SK
Sbjct: 782 KKALASTHFYGRHLVLEWANDDNSMEAIRKRSAAKFDEENDNARKRKSSK 808

BLAST of CmaCh16G005660 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 578.9 bits (1491), Expect = 6.4e-165
Identity = 358/743 (48.18%), Postives = 459/743 (61.78%), Query Frame = 0

Query: 6   SRICVKNLPKFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIHY 65
           SRI VKN+PK++ +++LR +FSEKGEITDVKL R  DG+SRQFA+IGFR+E +AQ AI Y
Sbjct: 4   SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITY 63

Query: 66  FNKSFLSTHRITCESAWKVGDPKIPRPWSKHSKEKKGIKDGMEVEYDKNVSFLGSKEEGD 125
           FNK+F  +H+I+      V DP   R   K     KG         DK +     K++ +
Sbjct: 64  FNKNFKHSHQISV----LVADPPPRRTQGKVDAYAKG---------DKQI----QKKDPE 123

Query: 126 DLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNGKGKEKPSHMKKIDGKKL 185
                  D DP++QEFL         K W+ND+ + P    +   K K S    +D KK 
Sbjct: 124 ------VDHDPQLQEFLHQEH---KLKFWSNDMCIHPSNGADDPNKAKRSF---LDSKKT 183

Query: 186 KLVNVDGDKAEEMKTSLHTNSAHDDKISDMEYFNSRVTKKWSDSQTSDDDNIDEDAENEN 245
           +                   S   D +SDMEYF SR+ K           N+D D E ++
Sbjct: 184 R------------------KSKVGDDVSDMEYFKSRIKK-----------NLDSDCETDS 243

Query: 246 EPIKKKLEMKDVQMVDSKLPLETEAEEEDHSNHCDADLLHMEESSSILEDKKDEMLENGR 305
                       +   +  P++ E + +      D   + +E       D  D++L+ GR
Sbjct: 244 R-----------EDAINVFPIDGEVKADRVDKDDDGHAMEVE------ADGSDDVLDAGR 303

Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
           LFV  LPY+ TEEEL EHF KFG +SEVHLV+DKDTR  +G+A++LY  PE AK A+++L
Sbjct: 304 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 363

Query: 366 DSSIFQGRLLHVMPAQLRKTFEKPEENILENQRSKSFKKKREEERKASEASGNTRAWNSL 425
           D   FQGR LH++PA+ R    K  +N   +   KSFKK+REE+RKASEA GNT AWNS 
Sbjct: 364 DKLPFQGRTLHILPAKPRAMSAKQVDN--SSNLPKSFKKEREEQRKASEACGNTNAWNSF 423

Query: 426 FMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASLE 485
           FMRPDT++EN+ R YGV+K ELLDRE +D AVR+ALGET+V+ ETK+AL  AGV V SLE
Sbjct: 424 FMRPDTILENLVRSYGVTKSELLDRECEDPAVRLALGETRVIMETKEALAKAGVRVTSLE 483

Query: 486 EFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIILPPTKILALVIFLEP 545
           EFA+ K D   RS HILLVK+LP+ S+E ELA MF KFGSLDKI+LPPTK +ALV+FLE 
Sbjct: 484 EFAARKGDVKNRSKHILLVKHLPFASTEKELAQMFRKFGSLDKIVLPPTKTMALVVFLEA 543

Query: 546 SGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPM-DGNVKDEKVGEGDARRVILEQAVD 605
           + ARAA  GLAY RYKDAPLYLEWAP +IL    + D   K   V E DARRV L+Q V 
Sbjct: 544 AEARAAMNGLAYTRYKDAPLYLEWAPRDILEPKALADNKEKKSAVEENDARRVNLDQQVG 603

Query: 606 GISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK-GQHV 665
             SD+       ES  L VKNL+FKTTDE L+KH +  +K G+ILS  VK+ I+   +  
Sbjct: 604 IYSDI------TESNVLHVKNLSFKTTDEGLKKHLTGVVKQGKILS--VKQIIRDWTRRR 661

Query: 666 SMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVEKEKSSTKLLV 725
           S G+GF+EFDSVETATSV  +L G VLDGH+++L     K+        +K     KL V
Sbjct: 664 SSGYGFVEFDSVETATSVYRDLPGNVLDGHSLILNFSENKRSETVGEGSDKVTKLAKLHV 661

Query: 726 RNVAFEATGKDLRQLFSPYGQIK 747
           +NVAFEAT K+LRQLFSP+GQI+
Sbjct: 724 KNVAFEATKKELRQLFSPFGQIQ 661

BLAST of CmaCh16G005660 vs. TAIR 10
Match: AT5G05720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-20
Identity = 98/297 (33.00%), Postives = 141/297 (47.47%), Query Frame = 0

Query: 540 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPM-DGNVKDEKVGEGDARRVI 599
           V+FLEP  AR A KG+  +  +     +  AP +IL    + D N     V E D RR +
Sbjct: 204 VVFLEPIEAREALKGMGVQALQRCS-PVSGAPRDILEPKALADNNENTSDVEENDVRRRL 263

Query: 600 -LEQAVDGISDVDFDPDRVESRSLFVKNLNFKT-------TDESLRKHFSEHMKGGRILS 659
            L+Q       V  D D  E   L+     F+T       TDESL+KH +E +K G+ILS
Sbjct: 264 NLDQ------QVGIDSDITEVCPLYDCCGRFETMYSELQDTDESLKKHLTELVKQGKILS 323

Query: 660 AKVKKHIKKGQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQR 719
            K                                  GTV+DGHA++L     K      +
Sbjct: 324 FK----------------------------------GTVVDGHALILSFSKNKPSGTVGK 383

Query: 720 KVEKEKSSTKLLVRNVAFEATGKDLRQLFSPYGQIKSLRLPMKFGKHRGFAFVEFVTKQE 779
            ++K+   TKL V+N+AFEAT K++RQLF+P+GQIKS+ LP +  K R +A    +T   
Sbjct: 384 DLDKDTILTKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPER-TKGR-YAACSSLTSLN 443

Query: 780 AQNAFQALSNTHLYGRHLVLERAKEGESLEELRARTAAQFSNDQDKSQNPILSKKRK 828
           A       S+T       V+E  K   S++ +R R+AA++ + +  + NP   KKRK
Sbjct: 444 A-------SSTRYLPSLQVIEWKKVDNSMKAIRYRSAAKYVDQE--NNNP---KKRK 445


HSP 2 Score: 84.0 bits (206), Expect = 6.5e-16
Identity = 95/333 (28.53%), Postives = 154/333 (46.25%), Query Frame = 0

Query: 6   SRICVKNLP-KFIDDNRLRTLFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAQAAIH 65
           S I VKNLP K + + RLR +FS KGEI DVKL R  DGKSRQFA+IGFRTE EAQ AI 
Sbjct: 2   SWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAIT 61

Query: 66  YFNKSFLSTHRITCESAWKVGDPKIPRPWSK---------HSKEKKGIK-------DGME 125
           Y NK F+ T+RI+ E    V DP  PR   K         ++K  K IK       DG +
Sbjct: 62  YVNKCFIDTYRISVE----VADPP-PREEGKENTEHFSNAYAKGDKKIKKKPEVSPDGAD 121

Query: 126 VEYDKNVSFLGSKEEGDDLKLSIQDDDPKIQEFLQVTQTRVNSKVWANDILMAPETDQNG 185
                 +S L SK+      +++  DD    E+ + ++T+ N        L   ++D   
Sbjct: 122 EPNKAKISLLDSKKTRKIKVVALVGDDVSDMEYYK-SRTKKN--------LSDSDSDCET 181

Query: 186 KGKEKPSHMKKIDGKKLKLVNVDGDKAEEMKTSLHTNSAHDDKI--------SDMEYFNS 245
            G E   H+  IDG      +++ D+ ++  T       H D +          ++    
Sbjct: 182 YGCEDAIHVFPIDG------DIEADRVDKEFTIHVFGFGHQDVVFLEPIEAREALKGMGV 241

Query: 246 RVTKKWSDSQTSDDDNIDEDAENENEPIKKKLEMKDVQM---VDSKLPLETEAEE----E 305
           +  ++ S    +  D ++  A  +N      +E  DV+    +D ++ ++++  E     
Sbjct: 242 QALQRCSPVSGAPRDILEPKALADNNENTSDVEENDVRRRLNLDQQVGIDSDITEVCPLY 301

Query: 306 DHSNHCDADLLHMEESSSILEDKKDEMLENGRL 307
           D     +     ++++   L+    E+++ G++
Sbjct: 302 DCCGRFETMYSELQDTDESLKKHLTELVKQGKI 314

BLAST of CmaCh16G005660 vs. TAIR 10
Match: AT1G49760.1 (poly(A) binding protein 8 )

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-16
Identity = 104/414 (25.12%), Postives = 168/414 (40.58%), Query Frame = 0

Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
           L+V +L    T+ +L E F + G V  V +  D  TRRS G  Y+ Y+ P+ A RAL EL
Sbjct: 47  LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query: 366 DSSIFQGRLLHVMPAQLRKTFEKP-EENILENQRSKSFKKKREEERKASEASGNTRAWNS 425
           +     GR + VM +    +  K    NI      KS   K   E  ++           
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA----------- 166

Query: 426 LFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASL 485
               P    +      G SKG    +   D A + A+ +   +    K +   G  V  L
Sbjct: 167 --FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV-YVGPFVHKL 226

Query: 486 EEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL-----PPTKILAL 545
           +   SG+    K     + VKNL    S+ EL  +FG+FG     ++       +K    
Sbjct: 227 QRDPSGE----KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGF 286

Query: 546 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVIL 605
           V F     A  A   L  K + D     EW       ++  +  +K +            
Sbjct: 287 VNFENSDDAARAVDALNGKTFDDK----EWFVGKAQKKSERETELKQK-----------F 346

Query: 606 EQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK 665
           EQ++   +      D+ +  +L+VKNL+   TD+ LR+HF+     G I S KV   ++ 
Sbjct: 347 EQSLKEAA------DKSQGSNLYVKNLDESVTDDKLREHFAPF---GTITSCKV---MRD 406

Query: 666 GQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVE 714
              VS G GF+ F + E AT   + + G ++    + + +   K+D + + + +
Sbjct: 407 PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ 415

BLAST of CmaCh16G005660 vs. TAIR 10
Match: AT1G49760.2 (poly(A) binding protein 8 )

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-16
Identity = 104/414 (25.12%), Postives = 168/414 (40.58%), Query Frame = 0

Query: 306 LFVRNLPYAATEEELEEHFGKFGTVSEVHLVVDKDTRRSKGIAYILYSHPEFAKRALEEL 365
           L+V +L    T+ +L E F + G V  V +  D  TRRS G  Y+ Y+ P+ A RAL EL
Sbjct: 47  LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query: 366 DSSIFQGRLLHVMPAQLRKTFEKP-EENILENQRSKSFKKKREEERKASEASGNTRAWNS 425
           +     GR + VM +    +  K    NI      KS   K   E  ++           
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSA----------- 166

Query: 426 LFMRPDTVVENIARKYGVSKGELLDRESDDLAVRVALGETQVVAETKKALTNAGVNVASL 485
               P    +      G SKG    +   D A + A+ +   +    K +   G  V  L
Sbjct: 167 --FGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV-YVGPFVHKL 226

Query: 486 EEFASGKVDGHKRSNHILLVKNLPYGSSEGELANMFGKFGSLDKIIL-----PPTKILAL 545
           +   SG+    K     + VKNL    S+ EL  +FG+FG     ++       +K    
Sbjct: 227 QRDPSGE----KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGF 286

Query: 546 VIFLEPSGARAAFKGLAYKRYKDAPLYLEWAPDNILSQNPMDGNVKDEKVGEGDARRVIL 605
           V F     A  A   L  K + D     EW       ++  +  +K +            
Sbjct: 287 VNFENSDDAARAVDALNGKTFDDK----EWFVGKAQKKSERETELKQK-----------F 346

Query: 606 EQAVDGISDVDFDPDRVESRSLFVKNLNFKTTDESLRKHFSEHMKGGRILSAKVKKHIKK 665
           EQ++   +      D+ +  +L+VKNL+   TD+ LR+HF+     G I S KV   ++ 
Sbjct: 347 EQSLKEAA------DKSQGSNLYVKNLDESVTDDKLREHFAPF---GTITSCKV---MRD 406

Query: 666 GQHVSMGFGFLEFDSVETATSVCSNLQGTVLDGHAIMLQMCHVKKDNQGQRKVE 714
              VS G GF+ F + E AT   + + G ++    + + +   K+D + + + +
Sbjct: 407 PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQ 415

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9Y4C85.5e-12934.29Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3[more]
Q54PB23.4e-12634.60Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=... [more]
Q8R3C62.5e-12132.71Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1[more]
Q5AJS61.0e-11432.28Multiple RNA-binding domain-containing protein 1 OS=Candida albicans (strain SC5... [more]
Q4PC176.6e-11433.10Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 ... [more]
Match NameE-valueIdentityDescription
AT4G19610.12.9e-22653.73nucleotide binding;nucleic acid binding;RNA binding [more]
AT5G08695.16.4e-16548.18RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G05720.12.0e-2033.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G49760.12.9e-1625.12poly(A) binding protein 8 [more]
AT1G49760.22.9e-1625.12poly(A) binding protein 8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 720..791
e-value: 8.0E-22
score: 88.5
coord: 305..378
e-value: 2.6E-25
score: 100.1
coord: 7..79
e-value: 3.1E-19
score: 79.9
coord: 501..568
e-value: 4.7E-6
score: 36.1
coord: 620..698
e-value: 1.7E-13
score: 60.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 502..564
e-value: 5.2E-6
score: 26.2
coord: 306..376
e-value: 2.4E-19
score: 68.9
coord: 8..76
e-value: 1.5E-13
score: 50.4
coord: 621..695
e-value: 2.1E-12
score: 46.7
coord: 721..788
e-value: 1.2E-17
score: 63.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 619..702
score: 14.317041
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..83
score: 14.726371
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 719..795
score: 17.88162
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 500..572
score: 10.496632
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 304..382
score: 18.069229
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 720..791
e-value: 18.0
score: 1.3
coord: 7..79
e-value: 13.0
score: 2.6
coord: 305..378
e-value: 1.5E-4
score: 31.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..85
e-value: 4.7E-19
score: 70.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 611..714
e-value: 7.5E-19
score: 70.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 219..392
e-value: 3.1E-29
score: 103.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 492..594
e-value: 2.1E-23
score: 84.3
coord: 715..822
e-value: 3.4E-28
score: 99.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 819..843
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 807..843
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..416
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..415
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 6..816
NoneNo IPR availablePANTHERPTHR23147:SF48RNA-BINDING PROTEIN 19-RELATEDcoord: 6..816
NoneNo IPR availableCDDcd12316RRM3_RBM19_RRM2_MRD1coord: 305..378
e-value: 8.83125E-36
score: 127.799
NoneNo IPR availableCDDcd12565RRM1_MRD1coord: 6..81
e-value: 1.0833E-37
score: 133.11
NoneNo IPR availableCDDcd12320RRM6_RBM19_RRM5_MRD1coord: 719..793
e-value: 5.51443E-43
score: 148.147
NoneNo IPR availableCDDcd12317RRM4_RBM19_RRM3_MRD1coord: 500..571
e-value: 1.3844E-36
score: 130.034
IPR034423Probable RNA-binding protein 19, RNA recognition motif 5CDDcd12318RRM5_RBM19_likecoord: 619..700
e-value: 5.78263E-28
score: 105.764
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 304..571
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 715..797
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..87
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 608..710

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G005660.1CmaCh16G005660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0001682 tRNA 5'-leader removal
cellular_component GO:0016020 membrane
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005655 nucleolar ribonuclease P complex
cellular_component GO:0000172 ribonuclease MRP complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding