CmaCh16G005540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G005540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	High mobility group box protein
Location	Cma_Chr16: 2844942 .. 2851531 (-)
RNA-Seq Expression	CmaCh16G005540
Synteny	CmaCh16G005540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATACGCCTCAAGCCCTCCCCTGCTCTCTGCTCTGCTCCTGTTCCCATCTATCTCCGATGGCTTCCACTGCTGAAATTCCGAAAACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACCAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAATCTAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGAAATGCTTCAACAGATGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATGTAGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTATTATGGTTCGTTTCTTAATCTCTTGTGTTTCTTTCAGATACTTGCTTACTGAGAAGAACTGAACAAGAAATGGATCGTCGTATCTTTAGGTTTTCGTTTCTAATTGTTGAAAATTTTTCTTCTGAATCAGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAAAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGGTAGATTATACTGCTGATAATTCATGGTTATGATACCTGTTAACTGTTAAGCAATTGCTCGTGAATTTCATGTTTACGGATTTTATCCTCTGATTCAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCGAACATTTTGGGGGCGAAGTGGAAGAATGTCACAGCAGATGAGAAGAAGCCATATGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAGTCACTTCTAAAGAGAAGCGTGAAAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAAGCCGAGAAAGAGAACAAGAAGAAGAAGTAAGAACCACATTCACTCTATCTTCACACTATGTTAATTTTCAAGTGCCTTGCAGATGTTTGATAAAATGCCCCTTAGGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGGAACAGAGAGGTCCTTACGAAGAGGTTAGCACACTTACCAAAAACAGATTCCTTCTTCATATTTTCATCCAAGATCGATATAACTCTTGAGAATTTGCAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCATCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGGTAGAAGAAGATGATTTTTTACTTTTTCCGTCATAATATCCCTGGATTAGCCATTGACATGAGTTTCTGGATGTGTGATAACAAACAAAAAACAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCCAAGAAGCCTGCATCCTCTTACATCCTGTTCAGGTTGAACAAACTAAATCAACCCTTTCTAAATTGCTGCATTTCAAGAGGTTTTTATATATACTGAGCTGGTTTCTTGTATGAACTGCAGCAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGTTTGGACTTAAATGATTCAAATATTTTTGTTGTTTTATAAACATTTTGTTTGGAAATCTGGGTGTGCTGAGTATAATGGTCTGTTCTTTTGATTTGGTTCGGGGTGAACAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGAGAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAAGTGGAGGAATACAACAAAACTGTTGGTGAAATGAAGGGCTGAAGAAATCTAATTGGTTCAGTTCTTCACGGTTCAAATGTTATTTGAACAGAGTCAGTTCCTAACAATGACTTGTTTTGATTAGTTGCTGCTAATCTTGTCTTCCTTCTCTGATTAGTTTGTTGGATTATTTTATTTTATTCTATTCTATGTTCTTGATTTCTCGAGCTCTTCCGCTGATGTTTTTAACACAATTTTTAGTGTTTAACACTCGCACACACTCTTCCGCTTCTGTAATGAATGTTGAACACAATTCTTAGCGGTTAACACTCGCACACACTCGGTAGAATTTATTATTGCCCTCCGATTCTTGGAAGAGTATTTAATGATTTGTTTATTAAAATAATTGGTTATTTTTATGTTTAAAATATCTAATATGTTACTATTTTTTTAAAAATCAATTTAAAAAAAAAATGTAAAACCATGTTCCAGCATCATGGAGCATGTGCCTGGGTGGATAAACAATTAGAGCTAGTTGTTATTTTATTGACAAAAAAAAAAATAAATAAATAAATAAATAAACAACAAATTTATATATATTTCAAAACTAAAAAAAGTCGTTAAAACTGTGTTGGTTAGGGAATTTTGAAATTAAACAAGAATAGATACATATTTAGAAATCAAGTTAAAGCTTGTGAATCTAATTATGATATGTTTTTTTTAGAGTTTATGTAAATACTTTAATGAAAAATTTAAGAATTTGCTTTGTTGATTAAATAATTGTGATAAAATAAATAAGTTGCTGTCATTCTTTATCTACGCAACAATAATATTAATTAAATAAATAGATATTTTTAAAGCAAACAAGACATCGTTATTACGAAATTGTTTGACTTAATTCGATCTTTAATCATTCGCCAGTTCCGGCATTTTTCAATATCGTTTTGCCTCTCTTACCGTACCGGACGCCGCACGCCGACAGCGACAACTACGATGGGGATTCAGCTTCCGGTCACCGAAGACCGAATCTCCGACGCCGGAGCATCATTCGTCCTCCAATCCAAAGGTAACGCTAAGTAGAAGAAGGAGTGATATGTTGAGAAGAGAGATTTTGCGATCGTCTCTGTTTTCTTCAAAATTTCGATTCTCTGGAACAATTGAGAACAACAAACTGAGTTTTATTTTATTATGAGTTTTGTTTCCTTGGATTGACGAATAAAAACAGGGGAATGGTGGCATGTGGGATTCCATTTGACGACGGCGATTGTCGGACCGACGATTCTAACGCTGCCGTACGCGTTCAGAGGATTAGGTTGGGGATTAGGGTTTTTCTGCTTGACGATTATGGCAGTTGTGACTTTCTACTCGTATTTCCTCATGTCGAAGGTTCTCGATAACTGCGAGAAGGCCGGTCGCCGTCACATCCGATTCCGGGAACTCGCCGCCGACGTATTAGGTATCGATTCTAAGAATATCGCTTTCAATTTTCTGCCTCGAAATTCTCTGTTCTAAAAAACGTATAATACTTCAAAACTCGTAATAATTTGTTTTTATTATACCATTTAGTGTTATATAATTAAATATATGTCATACTTTTATTTATTTATTTACATTAAAAAATTACTTAATAATCAAATTCTAATATAGCCAAGTGGATCAACCATTGAGATCTTTTGGTTTTAATCCACGCGGAGATGCATACACCATAAGCCTTGAGAGACGGTATGAGTATCACAAATTTGTCAGTTTCTTATAGCGCGCCGCGCCGCGACCCCACGGACCAAAATTGTTCCACCATACCTACTATTTATTGATCTCTGTCTCCCTATAAATGGGTCGTATTTTGGATCTTGATTTTGAACTTTGAACAGGATCTGGATGGATGTTTTACTTTGTAATATTCATCCAAACCGCGATCAATACTGGAGTCGGAATTGGAGCGATCTTGCTTTCCGGGCAGTGCCTTCAGGTATCTCATTCTTACAAGCTTCGCCCACTGATTTGCAGTTCATTCTGTTGTTTAGTTACCGTTTTTATGCTGTGTGGTTGATGAATAGATACACTCTAAGTACGTACTGCTGATTAGTGTGAAATGTTGACCCAATAAAAGCATGTGAAAGTTTTGTTGATCTTCTTTTTCTCCACTTTTGGGTCGTAGTCGTCTATTTATTAGGTGGGTGGTGGCTAACTTTTTCTAGTTGGCCTTCAAATTCATTCAGACTTGTCAAATTGTTTTCACACTTGTTAATTGTTACATTTTGATTTTTAAACATTTTGAACATTCCCTTGGCTTATATACTTGTAATGGCCCAAAGTTAACCGATATTGTCTTCTTTGGCTTTAGCTTTTCCTTTCGAGCTTTTCTCAAGTTTTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACTTTTATGAAGAGTGTGTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAATTCACCCCCTTATAAAAGGGTGTTTCGTTCTCTCCCTAACCGATGTGGGATCTCACACCCCCCTTCAGGGTCTAACGTCCTCGTTCCTTTACCCAATCGATGTGGGACCACCACCAAATCCACCCCCTTCCAATCGATGTGGGACCACCACCAAATCCACCCCCTTCTAATCAATGTGGGACCACCACTAAATCCACCCCCTTCTAATCAATGTGGGACCACCACCAAATCCACCCCTTTGGGGCCCAGCGTCCTTACTGACAAACCGCCTCGTGTCTACCCCCTTCGGGGAATAGCCTACTCGCTGGCACATCGCCTAGAGTCTAGCTTTGATACCATTTGTAATGGCTCAAGTCCAACGCTAGCAGATATTGTCCTTTTTGGGCTTTCCCTTTAGGGCTTTCCCTCAAAAAACACGTATGCTAGGGAAAAGTTTCCACACCCTCATATAAAAGATGTTTCATTCTACTCCCCAACCGATGTGGGATTTCACAATATGGGTCAAACTGAATTGATTGTGAGAGTTTAGGAGCTATTTAAGACTGGATTTAATATGAACTTAGAATGTGTGGACAACATGTTTGTAGGATCACTTTTCTTTTTTTGTTTTCTGCTGAAATATGAAAGAAGAAAGGAAAGATTGATATGGTTCTTGTTTACTGTTGGGGATGACATACAGATAATATATTCAAACCTTTTCCCAAATGGATCCATGAAACTGTACGAGTTCATAGCGATAGTAACAGGAGTGATGATCATTCTGTCTCAGCTTCCAACCTTCCACTCTCTTAGACATGTCAGTCTAGCTTCTCTGCTTCTCAGCTTGGGCTACGCCTTTCTTATTGTTGCTGCTTGTATCATTGCAGGTACTATTTATTACCATTGCTTTAACATCCCACGAGTTTTGAAATTTGATGTCCATGGTTGTTTTTTTCTTCTTTTGTGTTATTGAAGCAATGAGCAAAGAAGCTCCAGAAAGGGAGTATAGCTTAGAATCATCACCAAAATCAAGGGTCTTCAGCGCCTTCACATCCATCTCCATTTTAGCAGCCATTTTTGGGAACGGAATCCTTCCTGAAATCCAAGTAAAATACAACCTTAATTAACGCAACTTCGTTTAAATAAGATTGGTTGACATAATAACGACCTTAATATTCTATACAGTTATATTAATATCGCGTATATCTTCAAATTTGTACACATAAGTTATGAAGACATTGGAAATGCTGCAATGAGCATGTTCAAATCTCTATATCTGTGAACAGGCAACTCTAGCAGCTCCAGCGAGTGGGAAGATGGTGAAAGGGCTTTTGATGTGTTACAGTGTGATATTTGTAACTTTCTACGCCATTGCAGCATCTGGATATTGGGTGTTTGGAAACAGGGCAACCTCCAATATTTTGCTGAGCCTGACGCCGGACACTGGACCTCCATTGGCTCCCGCTTGGATTCTTGGGCTCGCTGTCATCTTTGTTCTTCTTCAACTCCTCGCCATTGGACTGGTCAGTGCTCACCTCTCATAATTGCTGCTTATGTTTAACTATGAATGATACATGGATAGTGGTGGAAAACGGGCAGGTTTATTCACAAGTGGCATACGAAATAATGGAGAAGCAATCAGCTGACGTGAAGAAAGGAATGTTTTCCAAAAGGAACCTTATTCCAAGGCTCATTCTTCGCTCAATATACATGATCATCTGTGGCTTTTTTGCTGCTATGCTTCCATTCTTTGGTGACATTAGTGCCGTGGTGGGTGCTATTTGCTTCATTCCTCTTGATTTCATTCTACCAATGCTTCTCTATAACATCACCCACAATCCTCCCAAATCCTCCCTCACCTATTCTATCAACCTCGCCATTATTGTCGTCTTCACCGGCGTTGGACTCTTGGGTTCGTTCTCTTCTATACGAAAGCTCATTCTTGATGCTTCCAAGTTCAAGCTCTTTAGTAATGATGTTGTCGATTGATCTAAAAAAATACCTCTAAATTTTGTACCCAATTTAAA

mRNA sequence

CAATACGCCTCAAGCCCTCCCCTGCTCTCTGCTCTGCTCCTGTTCCCATCTATCTCCGATGGCTTCCACTGCTGAAATTCCGAAAACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACCAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAATCTAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGAAATGCTTCAACAGATGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATGTAGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTATTATGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAAAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCGAACATTTTGGGGGCGAAGTGGAAGAATGTCACAGCAGATGAGAAGAAGCCATATGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAGTCACTTCTAAAGAGAAGCGTGAAAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAAGCCGAGAAAGAGAACAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGGAACAGAGAGGTCCTTACGAAGAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCATCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCCAAGAAGCCTGCATCCTCTTACATCCTGTTCAGCAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGAGAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAAGTGGAGGAATACAACAAAACTTTCCGGCATTTTTCAATATCGTTTTGCCTCTCTTACCGTACCGGACGCCGCACGCCGACAGCGACAACTACGATGGGGATTCAGCTTCCGGTCACCGAAGACCGAATCTCCGACGCCGGAGCATCATTCGTCCTCCAATCCAAAGGGGAATGGTGGCATGTGGGATTCCATTTGACGACGGCGATTGTCGGACCGACGATTCTAACGCTGCCGTACGCGTTCAGAGGATTAGGTTGGGGATTAGGGTTTTTCTGCTTGACGATTATGGCAGTTGTGACTTTCTACTCGTATTTCCTCATGTCGAAGGTTCTCGATAACTGCGAGAAGGCCGGTCGCCGTCACATCCGATTCCGGGAACTCGCCGCCGACGTATTAGGATCTGGATGGATGTTTTACTTTGTAATATTCATCCAAACCGCGATCAATACTGGAGTCGGAATTGGAGCGATCTTGCTTTCCGGGCAGTGCCTTCAGATAATATATTCAAACCTTTTCCCAAATGGATCCATGAAACTGTACGAGTTCATAGCGATAGTAACAGGAGTGATGATCATTCTGTCTCAGCTTCCAACCTTCCACTCTCTTAGACATGTCAGTCTAGCTTCTCTGCTTCTCAGCTTGGGCTACGCCTTTCTTATTGTTGCTGCTTGTATCATTGCAGCAATGAGCAAAGAAGCTCCAGAAAGGGAGTATAGCTTAGAATCATCACCAAAATCAAGGGTCTTCAGCGCCTTCACATCCATCTCCATTTTAGCAGCCATTTTTGGGAACGGAATCCTTCCTGAAATCCAAGCAACTCTAGCAGCTCCAGCGAGTGGGAAGATGGTGAAAGGGCTTTTGATGTGTTACAGTGTGATATTTGTAACTTTCTACGCCATTGCAGCATCTGGATATTGGGTGTTTGGAAACAGGGCAACCTCCAATATTTTGCTGAGCCTGACGCCGGACACTGGACCTCCATTGGCTCCCGCTTGGATTCTTGGGCTCGCTGTCATCTTTGTTCTTCTTCAACTCCTCGCCATTGGACTGGTTTATTCACAAGTGGCATACGAAATAATGGAGAAGCAATCAGCTGACGTGAAGAAAGGAATGTTTTCCAAAAGGAACCTTATTCCAAGGCTCATTCTTCGCTCAATATACATGATCATCTGTGGCTTTTTTGCTGCTATGCTTCCATTCTTTGGTGACATTAGTGCCGTGGTGGGTGCTATTTGCTTCATTCCTCTTGATTTCATTCTACCAATGCTTCTCTATAACATCACCCACAATCCTCCCAAATCCTCCCTCACCTATTCTATCAACCTCGCCATTATTGTCGTCTTCACCGGCGTTGGACTCTTGGGTTCGTTCTCTTCTATACGAAAGCTCATTCTTGATGCTTCCAAGTTCAAGCTCTTTAGTAATGATGTTGTCGATTGATCTAAAAAAATACCTCTAAATTTTGTACCCAATTTAAA

Coding sequence (CDS)

ATGGCTTCCACTGCTGAAATTCCGAAAACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACCAAAGTAACACAGCCATCGGAAGAGGAGATCCTCCTATCTCAGAATCAATCTTCGGCTAAGAAATCTAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGAAATGCTTCAACAGATGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATGTAGAGCAGGAAAAGCTCCAGATCGAATTGAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTATTATGAACTTCCCTATGATTCAAATTCTGAAAGATAAGGAACAAAAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCGAACATTTTGGGGGCGAAGTGGAAGAATGTCACAGCAGATGAGAAGAAGCCATATGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAGTCACTTCTAAAGAGAAGCGTGAAAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAAGCCGAGAAAGAGAACAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCCATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGGAACAGAGAGGTCCTTACGAAGAGATGGCGAGGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATATACAAGCATCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACAAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTAAAGAAGAAAGAGAAAACCGAGACTATTATAAAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCCAAGAAGCCTGCATCCTCTTACATCCTGTTCAGCAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGAGAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAAGTGGAGGAATACAACAAAACTTTCCGGCATTTTTCAATATCGTTTTGCCTCTCTTACCGTACCGGACGCCGCACGCCGACAGCGACAACTACGATGGGGATTCAGCTTCCGGTCACCGAAGACCGAATCTCCGACGCCGGAGCATCATTCGTCCTCCAATCCAAAGGGGAATGGTGGCATGTGGGATTCCATTTGACGACGGCGATTGTCGGACCGACGATTCTAACGCTGCCGTACGCGTTCAGAGGATTAGGTTGGGGATTAGGGTTTTTCTGCTTGACGATTATGGCAGTTGTGACTTTCTACTCGTATTTCCTCATGTCGAAGGTTCTCGATAACTGCGAGAAGGCCGGTCGCCGTCACATCCGATTCCGGGAACTCGCCGCCGACGTATTAGGATCTGGATGGATGTTTTACTTTGTAATATTCATCCAAACCGCGATCAATACTGGAGTCGGAATTGGAGCGATCTTGCTTTCCGGGCAGTGCCTTCAGATAATATATTCAAACCTTTTCCCAAATGGATCCATGAAACTGTACGAGTTCATAGCGATAGTAACAGGAGTGATGATCATTCTGTCTCAGCTTCCAACCTTCCACTCTCTTAGACATGTCAGTCTAGCTTCTCTGCTTCTCAGCTTGGGCTACGCCTTTCTTATTGTTGCTGCTTGTATCATTGCAGCAATGAGCAAAGAAGCTCCAGAAAGGGAGTATAGCTTAGAATCATCACCAAAATCAAGGGTCTTCAGCGCCTTCACATCCATCTCCATTTTAGCAGCCATTTTTGGGAACGGAATCCTTCCTGAAATCCAAGCAACTCTAGCAGCTCCAGCGAGTGGGAAGATGGTGAAAGGGCTTTTGATGTGTTACAGTGTGATATTTGTAACTTTCTACGCCATTGCAGCATCTGGATATTGGGTGTTTGGAAACAGGGCAACCTCCAATATTTTGCTGAGCCTGACGCCGGACACTGGACCTCCATTGGCTCCCGCTTGGATTCTTGGGCTCGCTGTCATCTTTGTTCTTCTTCAACTCCTCGCCATTGGACTGGTTTATTCACAAGTGGCATACGAAATAATGGAGAAGCAATCAGCTGACGTGAAGAAAGGAATGTTTTCCAAAAGGAACCTTATTCCAAGGCTCATTCTTCGCTCAATATACATGATCATCTGTGGCTTTTTTGCTGCTATGCTTCCATTCTTTGGTGACATTAGTGCCGTGGTGGGTGCTATTTGCTTCATTCCTCTTGATTTCATTCTACCAATGCTTCTCTATAACATCACCCACAATCCTCCCAAATCCTCCCTCACCTATTCTATCAACCTCGCCATTATTGTCGTCTTCACCGGCGTTGGACTCTTGGGTTCGTTCTCTTCTATACGAAAGCTCATTCTTGATGCTTCCAAGTTCAAGCTCTTTAGTAATGATGTTGTCGATTGA

Protein sequence

MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKSKSKAAPKKQPAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVEQEKLQIELKKLQKLKEFKPIMNFPMIQILKDKEQKKKEKKKCAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRESEAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKKKKEKDPLKPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAAILKKEEEEQMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEEYNKTFRHFSISFCLSYRTGRRTPTATTTMGIQLPVTEDRISDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTIMAVVTFYSYFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLSGQCLQIIYSNLFPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSLGYAFLIVAACIIAAMSKEAPEREYSLESSPKSRVFSAFTSISILAAIFGNGILPEIQATLAAPASGKMVKGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLSLTPDTGPPLAPAWILGLAVIFVLLQLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYMIICGFFAAMLPFFGDISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVFTGVGLLGSFSSIRKLILDASKFKLFSNDVVD

Homology

[Close]

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot
Match: Q8L4X4 (Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 2.2e-190
Identity = 338/436 (77.52%), Postives = 387/436 (88.76%), Query Frame = 0


Query: 516 SDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTIMAVVTFYS 575
           SDAGA FVLQSKGEWWH GFHLTTAIVGPTILTLPYAFRGLGW LGF CLT M +VTFY+
Sbjct: 17  SDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWWLGFVCLTTMGLVTFYA 76

Query: 576 YFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLSGQC 635
           Y+LMSKVLD+CEK+GRRHIRFRELAADVLGSG MFY VIFIQTAINTG+GIGAILL+GQC
Sbjct: 77  YYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTAINTGIGIGAILLAGQC 136

Query: 636 LQIIYSNLFPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSLGYAFLIVAA 695
           L I+YS+LFP G++KLYEFIA+VT VM++LSQLP+FHSLRH++ ASLLLSLGY FL+V A
Sbjct: 137 LDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINCASLLLSLGYTFLVVGA 196

Query: 696 CIIAAMSKEAPEREYSLESSPKSRVFSAFTSISILAAIFGNGILPEIQATLAAPASGKMV 755
           CI   +SK AP+REYSLE S   +VFSAFTSISI+AAIFGNGILPEIQATLA PA+GKM+
Sbjct: 197 CINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQATLAPPATGKML 256

Query: 756 KGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLSLTPDTGPPLAPAWILGLAVIFVLL 815
           KGLL+CYSVIF TFY+ A SGYWVFGN ++SNIL +L PD GP LAP  ++GLAVIFVLL
Sbjct: 257 KGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAPIVVIGLAVIFVLL 316

Query: 816 QLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYMIICGFFAAMLPFFGD 875
           QL AIGLVYSQVAYEIMEK+SAD  KG+FSKRNL+PRLILR++YM  CGF AAMLPFFGD
Sbjct: 317 QLFAIGLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAAMLPFFGD 376

Query: 876 ISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVFTGVGLLGSFSSIRKL 935
           I+AVVGA  FIPLDF+LPMLLYN+T+ P + S TY IN+ I+VVFT  GL+G+FSSIRKL
Sbjct: 377 INAVVGAFGFIPLDFVLPMLLYNMTYKPTRRSFTYWINMTIMVVFTCAGLMGAFSSIRKL 436

Query: 936 ILDASKFKLFSNDVVD 952
           +LDA+KFKLFS++VVD
Sbjct: 437 VLDANKFKLFSSEVVD 452

[Close]

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot
Match: Q9SUP7 (High mobility group B protein 6 OS=Arabidopsis thaliana OX=3702 GN=HMGB6 PE=2 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-140
Identity = 299/483 (61.90%), Postives = 374/483 (77.43%), Query Frame = 0


Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKS 60
           MA+ A+   TKKPRNSRKALK KN   E P S  S+                        
Sbjct: 1   MATNADPAPTKKPRNSRKALKQKNELVETPPSPVSV------------------------ 60

Query: 61  KSKAAPKKQPAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVE 120
           K K+A       +SF+++L EMQ ML++M+++K+KTEELLK KDE+L++K+EEL+TRD E
Sbjct: 61  KGKSA-------KSFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILRKKEEELETRDAE 120

Query: 121 QEKLQIELKKLQKLKEFKPIMNFPMIQ-ILKDKEQK---KKEKKKCAEKKRPSPPYILWC 180
           QEKL++ELKKLQK+KEFKP M F   Q  L   EQ+   KK+KK C E KRPS  Y+LWC
Sbjct: 121 QEKLKVELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 180

Query: 181 KDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRES 240
           KDQW E+KKENPEA+FKE SNILGAKWK+++A++KKPYEERYQ EK+AYLQV +KEKRE 
Sbjct: 181 KDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREK 240

Query: 241 EAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKK-KKEKDPLKPKHPMSAFFLFSNER 300
           EAMKLLE++QKQ+TAMELLDQYL F  EAE++NKKK KKEKDPLKPKHP+SAF +++NER
Sbjct: 241 EAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANER 300

Query: 301 RASLLAENKNVLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAA 360
           RA+L  ENK+V+EVAKITGEEWKN++++++ PYE++A+KNKE Y+Q ME YK  KEEEA 
Sbjct: 301 RAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEEAL 360

Query: 361 ILKKEEEEQMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASS 420
             KKEEEE +KLHK EAL +LKKKEKT+ +IKK K  ++KK     ++VDPNKPKKPASS
Sbjct: 361 SQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKEKATKKKK----NENVDPNKPKKPASS 420

Query: 421 YILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEE 479
           Y LFSK+ RK + EERPG NN+TV ALIS+KWKELSE E++++N KAA+ M+AY+KEVE 
Sbjct: 421 YFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA 448

[Close]

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot
Match: Q9T012 (High mobility group B protein 13 OS=Arabidopsis thaliana OX=3702 GN=HMGB13 PE=2 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.4e-136
Identity = 296/474 (62.45%), Postives = 356/474 (75.11%), Query Frame = 0


Query: 11  KKPRNSRKALKDKNSTPE-EPQSESSMVTKVTQPSEEEILLSQNQSSAKKSKSKAAPKKQ 70
           KK RNSRKALK KN   E  P S+    TK                              
Sbjct: 12  KKSRNSRKALKQKNEIVESSPVSDKGKETK------------------------------ 71

Query: 71  PAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVEQEKLQIELK 130
               SF+K+L EMQ ML++M+++KEKTE+LLK KDE+L++K       +VEQEKL+ ELK
Sbjct: 72  ----SFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRKK-------EVEQEKLKTELK 131

Query: 131 KLQKLKEFKPIMNFPMIQILKDKEQKKKEKKK---CAEKKRPSPPYILWCKDQWNEIKKE 190
           KLQK+KEFKP M F   Q L   E++KK KKK   CAE KRPS PYILWCKD WNE+KK+
Sbjct: 132 KLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQ 191

Query: 191 NPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRESEAMKLLEEEQ 250
           NPEA+FKE SNILGAKWK ++A+EKKPYEE+YQA+K+AYLQV +KEKRE EAMKLL++EQ
Sbjct: 192 NPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLDDEQ 251

Query: 251 KQKTAMELLDQYLQFKGEAEKENKKK-KKEKDPLKPKHPMSAFFLFSNERRASLLAENKN 310
           KQKTAMELLDQYL F  EAE +NKKK KK KDPLKPK P+SA+ +++NERRA+L  ENK+
Sbjct: 252 KQKTAMELLDQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKS 311

Query: 311 VLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAAILKKEEEEQM 370
           V+EVAK+ GEEWKN++EE++ PY++MA+KNKE Y+QEME YK  KEEEA   KKEEEE M
Sbjct: 312 VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFM 371

Query: 371 KLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASSYILFSKEARK 430
           KLHK EAL LLKKKEKT+ IIKKTKE  + KKK   ++VDPNKPKKP SSY LF K+ARK
Sbjct: 372 KLHKQEALQLLKKKEKTDNIIKKTKETAKNKKK--NENVDPNKPKKPTSSYFLFCKDARK 431

Query: 431 SVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEEYNKT 480
           SV+EE PG NNSTV A IS+KW EL E E++++N KAAE M+AY+KEVEEYNKT
Sbjct: 432 SVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKT 442

[Close]

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot
Match: F4HW02 (GABA transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=1 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.2e-108
Identity = 200/436 (45.87%), Postives = 296/436 (67.89%), Query Frame = 0


Query: 513 DRISDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTIMAVVT 572
           + + DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPYAF+ LGW  G  CL   A VT
Sbjct: 15  EEVVDAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVT 74

Query: 573 FYSYFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLS 632
           FYSY L+S  L++    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL 
Sbjct: 75  FYSYTLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLG 134

Query: 633 GQCLQIIYSNLFPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSLGYAFLI 692
           GQCL+ +Y  + PNG MKL+EF+ I   ++++L+Q P+FHSLR+++  SLLL L Y+   
Sbjct: 135 GQCLKAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASA 194

Query: 693 VAACIIAAMSKEAPEREYSLESSPKSRVFSAFTSISILAAIFGNGILPEIQATLAAPASG 752
            AA I       APE++Y++   P++RVF  F +++I+A  +GNGI+PEIQAT++AP  G
Sbjct: 195 AAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKG 254

Query: 753 KMVKGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLS-LTPDTGPPLAPAWILGLAVI 812
           KM+KGL MCY V+ +TF+ +A +GYW FG +A   I  + L  +T     P W + L  +
Sbjct: 255 KMMKGLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTNFLNAETNHYFVPTWFIFLVNL 314

Query: 813 FVLLQLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYMIICGFFAAMLP 872
           F +LQL A+ +VY Q   +I+E   +D  K  FS RN+IPRL++RS+++++    AAMLP
Sbjct: 315 FTVLQLSAVAVVYLQPINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLP 374

Query: 873 FFGDISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVFTGVGLLGSFSS 932
           FFGD+++++GA  FIPLDF+LP++ +N T  P K S  + IN  I VVF+ +G++   ++
Sbjct: 375 FFGDVNSLLGAFGFIPLDFVLPVVFFNFTFKPSKKSFIFWINTVIAVVFSCLGVIAMVAA 434

Query: 933 IRKLILDASKFKLFSN 948
           +R++I+DA+ +KLF++
Sbjct: 435 VRQIIIDANTYKLFAD 450

[Close]

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot
Match: Q9FKS8 (Lysine histidine transporter 1 OS=Arabidopsis thaliana OX=3702 GN=LHT1 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-41
Identity = 130/446 (29.15%), Postives = 224/446 (50.22%), Query Frame = 0


Query: 508 LPVTEDRISDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTI 567
           LP+T  R              +WW+  FH  TA+VG  +L LPYA   LGWG G   L +
Sbjct: 28  LPITSSR------------NAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVL 87

Query: 568 MAVVTFYSYFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIG 627
             V+T Y+ + M ++ +     G+R  R+ EL     G     Y V+  Q  +  GV I 
Sbjct: 88  SWVITLYTLWQMVEMHEMV--PGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIV 147

Query: 628 AILLSGQCLQIIYSNLFPN-GSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSL 687
            ++  G+ L+  +  +  +   +KL  FI I   V  +LS LP F+S+  VSLA+ ++SL
Sbjct: 148 YMVTGGKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSL 207

Query: 688 GYAFLIVAACIIAAMSKEAPEREYSLES-SPKSRVFSAFTSISILA-AIFGNGILPEIQA 747
            Y+ +  A+     + ++    +Y  ++ +    VF+ F+ +  +A A  G+ ++ EIQA
Sbjct: 208 SYSTIAWASSASKGVQEDV---QYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQA 267

Query: 748 TLAA----PASGKMVKGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLSLTPDTGPPL 807
           T+ +    P+ G M +G+++ Y V+ + ++ +A  GY++FGN    NIL+SL        
Sbjct: 268 TIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLK------- 327

Query: 808 APAWILGLAVIFVLLQLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYM 867
            PAW++  A IFV++ ++    +Y+   +++ME  +  VKK  F     + R  +R+ Y+
Sbjct: 328 KPAWLIATANIFVVIHVIGSYQIYAMPVFDMME--TLLVKKLNFRPTTTL-RFFVRNFYV 387

Query: 868 IICGFFAAMLPFFGDISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVF 927
               F     PFFG + A  G   F P  + LP +++   + P K SL++  N   IV  
Sbjct: 388 AATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFG 446

Query: 928 TGVGLLGSFSSIRKLILDASKFKLFS 947
             + +L     +R +++ A  +K +S
Sbjct: 448 LFLMVLSPIGGLRTIVIQAKGYKFYS 446

[Close]

BLAST of CmaCh16G005540 vs. TAIR 10
Match: AT5G41800.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 667.5 bits (1721), Expect = 1.6e-191
Identity = 338/436 (77.52%), Postives = 387/436 (88.76%), Query Frame = 0


Query: 516 SDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTIMAVVTFYS 575
           SDAGA FVLQSKGEWWH GFHLTTAIVGPTILTLPYAFRGLGW LGF CLT M +VTFY+
Sbjct: 17  SDAGALFVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWWLGFVCLTTMGLVTFYA 76

Query: 576 YFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLSGQC 635
           Y+LMSKVLD+CEK+GRRHIRFRELAADVLGSG MFY VIFIQTAINTG+GIGAILL+GQC
Sbjct: 77  YYLMSKVLDHCEKSGRRHIRFRELAADVLGSGLMFYVVIFIQTAINTGIGIGAILLAGQC 136

Query: 636 LQIIYSNLFPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSLGYAFLIVAA 695
           L I+YS+LFP G++KLYEFIA+VT VM++LSQLP+FHSLRH++ ASLLLSLGY FL+V A
Sbjct: 137 LDIMYSSLFPQGTLKLYEFIAMVTVVMMVLSQLPSFHSLRHINCASLLLSLGYTFLVVGA 196

Query: 696 CIIAAMSKEAPEREYSLESSPKSRVFSAFTSISILAAIFGNGILPEIQATLAAPASGKMV 755
           CI   +SK AP+REYSLE S   +VFSAFTSISI+AAIFGNGILPEIQATLA PA+GKM+
Sbjct: 197 CINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQATLAPPATGKML 256

Query: 756 KGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLSLTPDTGPPLAPAWILGLAVIFVLL 815
           KGLL+CYSVIF TFY+ A SGYWVFGN ++SNIL +L PD GP LAP  ++GLAVIFVLL
Sbjct: 257 KGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAPIVVIGLAVIFVLL 316

Query: 816 QLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYMIICGFFAAMLPFFGD 875
           QL AIGLVYSQVAYEIMEK+SAD  KG+FSKRNL+PRLILR++YM  CGF AAMLPFFGD
Sbjct: 317 QLFAIGLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAAMLPFFGD 376

Query: 876 ISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVFTGVGLLGSFSSIRKL 935
           I+AVVGA  FIPLDF+LPMLLYN+T+ P + S TY IN+ I+VVFT  GL+G+FSSIRKL
Sbjct: 377 INAVVGAFGFIPLDFVLPMLLYNMTYKPTRRSFTYWINMTIMVVFTCAGLMGAFSSIRKL 436

Query: 936 ILDASKFKLFSNDVVD 952
           +LDA+KFKLFS++VVD
Sbjct: 437 VLDANKFKLFSSEVVD 452

[Close]

BLAST of CmaCh16G005540 vs. TAIR 10
Match: AT4G23800.1 (HMG (high mobility group) box protein )

HSP 1 Score: 501.5 bits (1290), Expect = 1.5e-141
Identity = 299/483 (61.90%), Postives = 374/483 (77.43%), Query Frame = 0


Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKS 60
           MA+ A+   TKKPRNSRKALK KN   E P S  S+                        
Sbjct: 1   MATNADPAPTKKPRNSRKALKQKNELVETPPSPVSV------------------------ 60

Query: 61  KSKAAPKKQPAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVE 120
           K K+A       +SF+++L EMQ ML++M+++K+KTEELLK KDE+L++K+EEL+TRD E
Sbjct: 61  KGKSA-------KSFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILRKKEEELETRDAE 120

Query: 121 QEKLQIELKKLQKLKEFKPIMNFPMIQ-ILKDKEQK---KKEKKKCAEKKRPSPPYILWC 180
           QEKL++ELKKLQK+KEFKP M F   Q  L   EQ+   KK+KK C E KRPS  Y+LWC
Sbjct: 121 QEKLKVELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 180

Query: 181 KDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRES 240
           KDQW E+KKENPEA+FKE SNILGAKWK+++A++KKPYEERYQ EK+AYLQV +KEKRE 
Sbjct: 181 KDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREK 240

Query: 241 EAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKK-KKEKDPLKPKHPMSAFFLFSNER 300
           EAMKLLE++QKQ+TAMELLDQYL F  EAE++NKKK KKEKDPLKPKHP+SAF +++NER
Sbjct: 241 EAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANER 300

Query: 301 RASLLAENKNVLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAA 360
           RA+L  ENK+V+EVAKITGEEWKN++++++ PYE++A+KNKE Y+Q ME YK  KEEEA 
Sbjct: 301 RAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEEAL 360

Query: 361 ILKKEEEEQMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASS 420
             KKEEEE +KLHK EAL +LKKKEKT+ +IKK K  ++KK     ++VDPNKPKKPASS
Sbjct: 361 SQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKEKATKKKK----NENVDPNKPKKPASS 420

Query: 421 YILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEE 479
           Y LFSK+ RK + EERPG NN+TV ALIS+KWKELSE E++++N KAA+ M+AY+KEVE 
Sbjct: 421 YFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA 448

[Close]

BLAST of CmaCh16G005540 vs. TAIR 10
Match: AT4G23800.2 (HMG (high mobility group) box protein )

HSP 1 Score: 500.0 bits (1286), Expect = 4.3e-141
Identity = 298/483 (61.70%), Postives = 370/483 (76.60%), Query Frame = 0


Query: 1   MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEILLSQNQSSAKKS 60
           MA+ A+   TKKPRNSRKALK KN   E P S  S+                        
Sbjct: 1   MATNADPAPTKKPRNSRKALKQKNELVETPPSPVSV------------------------ 60

Query: 61  KSKAAPKKQPAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVE 120
           K K+A       +SF+++L EMQ ML++M+++K+KTEELLK KDE+L++K+EEL+TRD E
Sbjct: 61  KGKSA-------KSFEQDLMEMQTMLEKMKIEKDKTEELLKEKDEILRKKEEELETRDAE 120

Query: 121 QEKLQIELKKLQKLKEFKPIMNFPMIQ-ILKDKEQK---KKEKKKCAEKKRPSPPYILWC 180
           QEKL++ELKKLQK+KEFKP M F   Q  L   EQ+   KK+KK C E KRPS  Y+LWC
Sbjct: 121 QEKLKVELKKLQKMKEFKPNMTFACGQSSLTQAEQEKANKKKKKDCPETKRPSSSYVLWC 180

Query: 181 KDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRES 240
           KDQW E+KKENPEA+FKE SNILGAKWK+++A++KKPYEERYQ EK+AYLQV +KEKRE 
Sbjct: 181 KDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQVIAKEKREK 240

Query: 241 EAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKK-KKEKDPLKPKHPMSAFFLFSNER 300
           EAMKLLE++QKQ+TAMELLDQYL F  EAE++NKKK KKEKDPLKPKHP+SAF +++NER
Sbjct: 241 EAMKLLEDDQKQRTAMELLDQYLNFVQEAEQDNKKKNKKEKDPLKPKHPVSAFLVYANER 300

Query: 301 RASLLAENKNVLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAA 360
           RA+L  ENK+V+EVAKITGEEWKN++++++ PYE++A+KNKE Y+Q ME YK  KEEEA 
Sbjct: 301 RAALREENKSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEEAL 360

Query: 361 ILKKEEEEQMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASS 420
             KKEEEE +KLHK EAL +LKKKEKT+ +IKK K E          +VDPNKPKKPASS
Sbjct: 361 SQKKEEEELLKLHKQEALQMLKKKEKTDNLIKKKKNE----------NVDPNKPKKPASS 420

Query: 421 YILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEE 479
           Y LFSK+ RK + EERPG NN+TV ALIS+KWKELSE E++++N KAA+ M+AY+KEVE 
Sbjct: 421 YFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAYKKEVEA 442

[Close]

BLAST of CmaCh16G005540 vs. TAIR 10
Match: AT4G11080.1 (HMG (high mobility group) box protein )

HSP 1 Score: 488.8 bits (1257), Expect = 9.9e-138
Identity = 296/474 (62.45%), Postives = 356/474 (75.11%), Query Frame = 0


Query: 11  KKPRNSRKALKDKNSTPE-EPQSESSMVTKVTQPSEEEILLSQNQSSAKKSKSKAAPKKQ 70
           KK RNSRKALK KN   E  P S+    TK                              
Sbjct: 12  KKSRNSRKALKQKNEIVESSPVSDKGKETK------------------------------ 71

Query: 71  PAKQSFDKELQEMQEMLQQMRLDKEKTEELLKAKDEMLKQKDEELKTRDVEQEKLQIELK 130
               SF+K+L EMQ ML++M+++KEKTE+LLK KDE+L++K       +VEQEKL+ ELK
Sbjct: 72  ----SFEKDLMEMQAMLEKMKIEKEKTEDLLKEKDEILRKK-------EVEQEKLKTELK 131

Query: 131 KLQKLKEFKPIMNFPMIQILKDKEQKKKEKKK---CAEKKRPSPPYILWCKDQWNEIKKE 190
           KLQK+KEFKP M F   Q L   E++KK KKK   CAE KRPS PYILWCKD WNE+KK+
Sbjct: 132 KLQKMKEFKPNMTFAFSQSLAQTEEEKKGKKKKKDCAETKRPSTPYILWCKDNWNEVKKQ 191

Query: 191 NPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQVTSKEKRESEAMKLLEEEQ 250
           NPEA+FKE SNILGAKWK ++A+EKKPYEE+YQA+K+AYLQV +KEKRE EAMKLL++EQ
Sbjct: 192 NPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQVITKEKREREAMKLLDDEQ 251

Query: 251 KQKTAMELLDQYLQFKGEAEKENKKK-KKEKDPLKPKHPMSAFFLFSNERRASLLAENKN 310
           KQKTAMELLDQYL F  EAE +NKKK KK KDPLKPK P+SA+ +++NERRA+L  ENK+
Sbjct: 252 KQKTAMELLDQYLHFVQEAEHDNKKKAKKIKDPLKPKQPISAYLIYANERRAALKGENKS 311

Query: 311 VLEVAKITGEEWKNMTEEQRGPYEEMARKNKEKYMQEMEIYKHQKEEEAAILKKEEEEQM 370
           V+EVAK+ GEEWKN++EE++ PY++MA+KNKE Y+QEME YK  KEEEA   KKEEEE M
Sbjct: 312 VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQEMEGYKRTKEEEAMSQKKEEEEFM 371

Query: 371 KLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASSYILFSKEARK 430
           KLHK EAL LLKKKEKT+ IIKKTKE  + KKK   ++VDPNKPKKP SSY LF K+ARK
Sbjct: 372 KLHKQEALQLLKKKEKTDNIIKKTKETAKNKKK--NENVDPNKPKKPTSSYFLFCKDARK 431

Query: 431 SVMEERPGANNSTVNALISVKWKELSEGERKMWNEKAAEAMDAYRKEVEEYNKT 480
           SV+EE PG NNSTV A IS+KW EL E E++++N KAAE M+AY+KEVEEYNKT
Sbjct: 432 SVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKT 442

[Close]

BLAST of CmaCh16G005540 vs. TAIR 10
Match: AT1G08230.2 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 396.0 bits (1016), Expect = 8.7e-110
Identity = 200/436 (45.87%), Postives = 296/436 (67.89%), Query Frame = 0


Query: 513 DRISDAGASFVLQSKGEWWHVGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTIMAVVT 572
           + + DAG+ FVL+SKG WWH GFHLTT+IV P +L+LPYAF+ LGW  G  CL   A VT
Sbjct: 15  EEVVDAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVT 74

Query: 573 FYSYFLMSKVLDNCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLS 632
           FYSY L+S  L++    G R++RFR++A  +L   W  Y+V  IQ A+  GV I   LL 
Sbjct: 75  FYSYTLLSLTLEHHASLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLG 134

Query: 633 GQCLQIIYSNLFPNGSMKLYEFIAIVTGVMIILSQLPTFHSLRHVSLASLLLSLGYAFLI 692
           GQCL+ +Y  + PNG MKL+EF+ I   ++++L+Q P+FHSLR+++  SLLL L Y+   
Sbjct: 135 GQCLKAMYLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASA 194

Query: 693 VAACIIAAMSKEAPEREYSLESSPKSRVFSAFTSISILAAIFGNGILPEIQATLAAPASG 752
            AA I       APE++Y++   P++RVF  F +++I+A  +GNGI+PEIQAT++AP  G
Sbjct: 195 AAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKG 254

Query: 753 KMVKGLLMCYSVIFVTFYAIAASGYWVFGNRATSNILLS-LTPDTGPPLAPAWILGLAVI 812
           KM+KGL MCY V+ +TF+ +A +GYW FG +A   I  + L  +T     P W + L  +
Sbjct: 255 KMMKGLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTNFLNAETNHYFVPTWFIFLVNL 314

Query: 813 FVLLQLLAIGLVYSQVAYEIMEKQSADVKKGMFSKRNLIPRLILRSIYMIICGFFAAMLP 872
           F +LQL A+ +VY Q   +I+E   +D  K  FS RN+IPRL++RS+++++    AAMLP
Sbjct: 315 FTVLQLSAVAVVYLQPINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLP 374

Query: 873 FFGDISAVVGAICFIPLDFILPMLLYNITHNPPKSSLTYSINLAIIVVFTGVGLLGSFSS 932
           FFGD+++++GA  FIPLDF+LP++ +N T  P K S  + IN  I VVF+ +G++   ++
Sbjct: 375 FFGDVNSLLGAFGFIPLDFVLPVVFFNFTFKPSKKSFIFWINTVIAVVFSCLGVIAMVAA 434

Query: 933 IRKLILDASKFKLFSN 948
           +R++I+DA+ +KLF++
Sbjct: 435 VRQIIIDANTYKLFAD 450

The following BLAST results are available for this feature:

BLAST of CmaCh16G005540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4X4	2.2e-190	77.52	Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV...	[more]
Q9SUP7	2.1e-140	61.90	High mobility group B protein 6 OS=Arabidopsis thaliana OX=3702 GN=HMGB6 PE=2 SV...	[more]
Q9T012	1.4e-136	62.45	High mobility group B protein 13 OS=Arabidopsis thaliana OX=3702 GN=HMGB13 PE=2 ...	[more]
F4HW02	1.2e-108	45.87	GABA transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=1 SV=1	[more]
Q9FKS8	1.3e-41	29.15	Lysine histidine transporter 1 OS=Arabidopsis thaliana OX=3702 GN=LHT1 PE=1 SV=1	[more]

BLAST of CmaCh16G005540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41800.1	1.6e-191	77.52	Transmembrane amino acid transporter family protein	[more]
AT4G23800.1	1.5e-141	61.90	HMG (high mobility group) box protein	[more]
AT4G23800.2	4.3e-141	61.70	HMG (high mobility group) box protein	[more]
AT4G11080.1	9.9e-138	62.45	HMG (high mobility group) box protein	[more]
AT1G08230.2	8.7e-110	45.87	Transmembrane amino acid transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 379..399
None	No IPR available	COILS	Coil	Coil	coord: 459..479
None	No IPR available	COILS	Coil	Coil	coord: 146..166
None	No IPR available	COILS	Coil	Coil	coord: 329..363
None	No IPR available	COILS	Coil	Coil	coord: 72..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 385..416
None	No IPR available	PANTHER	PTHR48017	OS05G0424000 PROTEIN-RELATED	coord: 519..945
None	No IPR available	PANTHER	PTHR48017:SF60	GABA TRANSPORTER 2 ISOFORM X1-RELATED	coord: 519..945
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 167..225 e-value: 5.20418E-19 score: 79.9793
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 409..474 e-value: 1.74237E-18 score: 78.4385
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 284..344 e-value: 1.4522E-19 score: 81.5201
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 408..478 e-value: 1.2E-18 score: 77.9 coord: 280..348 e-value: 1.2E-23 score: 94.5 coord: 164..234 e-value: 2.1E-17 score: 73.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 409..477 e-value: 1.2E-15 score: 57.7 coord: 281..347 e-value: 8.4E-18 score: 64.6 coord: 166..227 e-value: 1.0E-17 score: 64.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 165..233 score: 16.310602
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 409..477 score: 17.464741
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 281..347 score: 19.018978
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 264..372 e-value: 1.5E-22 score: 81.7 coord: 388..483 e-value: 5.1E-21 score: 76.8 coord: 149..252 e-value: 3.3E-18 score: 67.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 268..354
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 152..227
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 404..491
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 527..936 e-value: 1.3E-63 score: 215.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005540.1	CmaCh16G005540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0015293	symporter activity