CmaCh16G005160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G005160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr16: 2648480 .. 2651300 (+)
RNA-Seq Expression	CmaCh16G005160
Synteny	CmaCh16G005160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGACAAGATTCAAAATCAATAAGACACTTCCTGTAGTATTTCCCTTTTCGCGTCAGGTGGCCTGTGTGTTATCCACCGAACCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCAAACAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTTGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAAGGGAATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGTAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTAGTTACTTATAATAGTGTCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCGAATGATGTTTTAAATGAAATGGTTGATGCGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTTTATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCACAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATTTAGGTTCCATTATGCATTGCGATTTACCACGGTGATGTTATTGAAGAACTTCAGACCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGTAAACATCTAGAAGCAACTGAGCTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAATGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACACTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTAGAGGAATGCTTTAGACTTAAAGAAGAGATGACTAACCAAGGAATTCAACCAGACATCTATACTTGCAATTTTCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTACACACTTATGGGGTTATGATGGATGCTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGTCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGGCGTGTTGAAGATGCAAAACATCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGTCCTAATAAAATTACCTATACTGTCATGATTGACGGGTATTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGGTTGGAATCAACCAACAATTACGAGCCAAGACTGATCTAATTTCTGCAGAGGTTCTTCGTTACCTCATTATCTGTTGATAATGTGATTACTGTTTCGTGTTCAACTGATCTGAAAATTATTCTTTTGTTTTATCTTTGTTTTTTATTTATTAGTGACTGGATACGTCAGTATTGTTTAGCTTATGCATTCCGATATATTGGAGGCTATCCACCTTCTCTTGTTCAAATGAAAGAGCCAAAGACGAACATCCGTCTTTAGTCTCTGGAGGCTGGTAGGCTTTATTTTATAGTGTATTCCATTTCCACTCAGTATATATATCATTAGTTTATATGTCGTATTGCTACAGGTAAAGCATATGTTCTGAAAACTTGGTATTATTAAACAGA

mRNA sequence

ATGCATTTGACAAGATTCAAAATCAATAAGACACTTCCTGTAGTATTTCCCTTTTCGCGTCAGGTGGCCTGTGTGTTATCCACCGAACCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCAAACAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTTGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAAGGGAATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGTAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTAGTTACTTATAATAGTGTCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCGAATGATGTTTTAAATGAAATGGTTGATGCGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTTTATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCACAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATTTAGGTTCCATTATGCATTGCGATTTACCACGGTGATGTTATTGAAGAACTTCAGACCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGTAAACATCTAGAAGCAACTGAGCTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAATGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACACTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTAGAGGAATGCTTTAGACTTAAAGAAGAGATGACTAACCAAGGAATTCAACCAGACATCTATACTTGCAATTTTCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTACACACTTATGGGGTTATGATGGATGCTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGTCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGGCGTGTTGAAGATGCAAAACATCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGTCCTAATAAAATTACCTATACTGTCATGATTGACGGGTATTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGTATTGTTTAGCTTATGCATTCCGATATATTGGAGGCTATCCACCTTCTCTTGTTCAAATGAAAGAGCCAAAGACGAACATCCGTCTTTAGTCTCTGGAGGCTGA

Coding sequence (CDS)

ATGCATTTGACAAGATTCAAAATCAATAAGACACTTCCTGTAGTATTTCCCTTTTCGCGTCAGGTGGCCTGTGTGTTATCCACCGAACCGCATAAAGAACATCACCAGGACCCGCCATGGCAGCTCCAGGATCAGTTGCTCTATTCGGTATCTTCTATTCTCTCTAATTCGTCTCTCGACTCTTCTAAATGTAGAGCCCTCTTGCCCCATTTGTCTCCTTTTCAGTTTGATCAGCTCTTCTTCTCCGTTGGATTGAAAGCCAATCCCAAAACTTGTCTTAATTTCTTTTACTTTGCGTCTGATTCTTTCAAGTTTCGATTTACCATTCGCTCCTATTGTTTATTGATTCTTTTGCTTGTTCATTCCAAGTTTTTACCACCCGCGAGATTGCTTCTGATTCGTTTGATAGACGGGAAGCTCCCGGTGTTGAATTCGGATTCAAACAAGCTTCACATTGAGATAGCTAATGAATTATTTGGTTTAACTTCAGTTGTTGGGCGGTTTGAATGCACACATGCATTTGATTTGTTGATACATGTATACAGCACACAATTCAGAAATCTTTGCTTTAGTTACGCTGTTGATGTGTTTTATTTGTTTGCTCGCAAGGGAATCTTTCCGTCCTTAAAGACTTGTAACTTTTTATTGAGCTCTTTGGTGAAGGCTAATGAACTTGAGAAATGCTGTGAAGTATTTGAAGTGATGTCCCAAGGTGTTCGTCCGGATGTTTTCCTGTTCACGAATGTAATAAATGCTTTGTGTAAAGGAGGGAAGATGGAAAATGCCATGGAGTTATTAATGAATATGGAGAAGTTGGGTATTTCTCCAAATGTAGTTACTTATAATAGTGTCATTCATGGTTTATGCCAGAATGGGAGATTAGGCGATGCCTTTGAGCTCAAGGAGAAGATGACAATAGAAGGGGTAAAGCCAAGTCTTATAACTTATAGTGTGCTTATTAATGGTTTGACGAAACTGGAAAAATTTGACAAAGCGAATGATGTTTTAAATGAAATGGTTGATGCGGGTTTTGTTCCGAATGCAGTTGTCTACAATACTTTAATTGATGGATACTGCAAAATGGGCAAGATCAATGAAGCACTTAAGATTAGAGATGTGATGGTATCCAAAAATATAACTCCTACTTCAGTTACTTTTTATACTCTCTTGCAAGGATTTTGCAAGAGTAATCAAATCGAGCAAGCACAGAATACTCTTGAGGAGATATTATCACAAGGATTTCCTATAAACCCTGTTACCTGTTATTCGGTTATCCACTGGTTATGTACGAAATTTAGGTTCCATTATGCATTGCGATTTACCACGGTGATGTTATTGAAGAACTTCAGACCTAGTGATCAGCTGTTAACCATATTGGTATGTGGGCTCTGTAAGGACGGTAAACATCTAGAAGCAACTGAGCTTTGGTTTAGGTTATTGGAGAAAGGGTCTCCAGCAAGTACCGCAACCTCCAATGCTCTAATTCATGGACTTTGTGGGGCTGGTAAAATGGCAGAGGCTGTTAGAATACTCAAGGAGATGTTGGAGAGGGGTTTTTCATTGGATCGGATCACGTACAACACACTCATCTTAGGTTGTTGCAAAGAGGGAAAAGTAGAGGAATGCTTTAGACTTAAAGAAGAGATGACTAACCAAGGAATTCAACCAGACATCTATACTTGCAATTTTCTATTGTATGGACTGTGCAATGCTGGAAAATTAGATGATGCTATTAAGCTTTGGGATGAATTCAAAGCCAGTGGGTTAATTTCTAATGTACACACTTATGGGGTTATGATGGATGCTTATTGTAAAGCTAACAGAATGGAAGATGTTGAAAAATTATTCAATGAGTTGGTCACTAAGAAAATGGAGCTAAATTCCATTGTCTACAACATATTTATCAGAGCACATTGTCGTAATGGAAACGTTGCTGCAGCTTTGCAACTTCGTGATGATATGAAAAGCAAGGGAATTTTTCCAACTTGTGCCACATATTCTTCTCTAATACACGGCATGTGCAACATTGGGCGTGTTGAAGATGCAAAACATCTTATTGATGAAATGAGAGAGGAGGGATTGTTGCCAAATGTTGTTTGCTATACTGCATTAATTGGCGGTTATTGTAAGCTGGGGCAAATGGATATTGCCGAAGCAACTTGGCTCGAGATGACCTCTTTGAACATAAGTCCTAATAAAATTACCTATACTGTCATGATTGACGGGTATTGTAAATTAGGGAATATGGAAGAAGCAAATAACCTTTTGAGCAAAATGAAAGAAAGTGGAATCGTCCCAGATGTCGTTACTTACAATGCCTTGACTAATGGGTTCTGCAAGGGAAAGGACATGGATAAAGCTTTTAAAACATGCGATGAAATGGCCACCGGAGGATTGTCTTTAGATGAAATTACTTACACTACTCTCGTGCACGTATTGTTTAGCTTATGCATTCCGATATATTGGAGGCTATCCACCTTCTCTTGTTCAAATGAAAGAGCCAAAGACGAACATCCGTCTTTAGTCTCTGGAGGCTGA

Protein sequence

MHLTRFKINKTLPVVFPFSRQVACVLSTEPHKEHHQDPPWQLQDQLLYSVSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANELEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSVIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEILSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYCKLGQMDIAEATWLEMTSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKAFKTCDEMATGGLSLDEITYTTLVHVLFSLCIPIYWRLSTFSCSNERAKDEHPSLVSGG

Homology

[Close]

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 748.0 bits (1930), Expect = 1.1e-214
Identity = 380/744 (51.08%), Postives = 512/744 (68.82%), Query Frame = 0


Query: 50  VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTI 109
           +SS+LS  SLD  +C+ L+  LSP +FD+LF     K NPKT L+FF  ASDSF F F++
Sbjct: 80  LSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSL 139

Query: 110 RSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFE 169
           RSYCLLI LL+ +  L  AR++LIRLI+G +PVL        + IA+ +  L+       
Sbjct: 140 RSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEI 199

Query: 170 CTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANELEKCC 229
                DLLI VY TQF+      A+DVF + A KG+FPS  TCN LL+SLV+ANE +KCC
Sbjct: 200 RRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCC 259

Query: 230 EVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSVIHGLC 289
           E F+V+ +GV PDV+LFT  INA CKGGK+E A++L   ME+ G++PNVVT+N+VI GL 
Sbjct: 260 EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 319

Query: 290 QNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAV 349
             GR  +AF  KEKM   G++P+LITYS+L+ GLT+ ++   A  VL EM   GF PN +
Sbjct: 320 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 379

Query: 350 VYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEI 409
           VYN LID + + G +N+A++I+D+MVSK ++ TS T+ TL++G+CK+ Q + A+  L+E+
Sbjct: 380 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439

Query: 410 LSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKH 469
           LS GF +N  +  SVI  LC+   F  ALRF   MLL+N  P   LLT L+ GLCK GKH
Sbjct: 440 LSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKH 499

Query: 470 LEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTL 529
            +A ELWF+ L KG    T TSNAL+HGLC AGK+ EA RI KE+L RG  +DR++YNTL
Sbjct: 500 SKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 559

Query: 530 ILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGL 589
           I GCC + K++E F   +EM  +G++PD YT + L+ GL N  K+++AI+ WD+ K +G+
Sbjct: 560 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGM 619

Query: 590 ISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQ 649
           + +V+TY VM+D  CKA R E+ ++ F+E+++K ++ N++VYN  IRA+CR+G ++ AL+
Sbjct: 620 LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALE 679

Query: 650 LRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYC 709
           LR+DMK KGI P  ATY+SLI GM  I RVE+AK L +EMR EGL PNV  YTALI GY 
Sbjct: 680 LREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 739

Query: 710 KLGQMDIAEATWLEMTSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVV 769
           KLGQM   E    EM S N+ PNKITYTVMI GY + GN+ EA+ LL++M+E GIVPD +
Sbjct: 740 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 799

Query: 770 TYNALTNGFCKGKDMDKAFKTCDE 794
           TY     G+ K   + +AFK  DE
Sbjct: 800 TYKEFIYGYLKQGGVLEAFKGSDE 823

[Close]

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot
Match: Q9FJE6 (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.1e-96
Identity = 231/801 (28.84%), Postives = 378/801 (47.19%), Query Frame = 0


Query: 83  VGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPV 142
           +G   +PK  L FF F      F  +  S+C+LI  LV +    PA  LL  L+   L  
Sbjct: 78  IGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLL---LRA 137

Query: 143 LNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFAR 202
           L         ++ N LF       +   + +FDLLI  Y    R L     V VF +   
Sbjct: 138 LKPS------DVFNVLFSCYEKC-KLSSSSSFDLLIQHYVRSRRVL---DGVLVFKMMIT 197

Query: 203 K-GIFPSLKTCNFLLSSLVKANELEKCCEVF-EVMSQGVRPDVFLFTNVINALCKGGKME 262
           K  + P ++T + LL  LVK        E+F +++S G+RPDV+++T VI +LC+   + 
Sbjct: 198 KVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLS 257

Query: 263 NAMELLMNMEKLGISPNVVTYNSVIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLI 322
            A E++ +ME  G   N+V YN +I GLC+  ++ +A  +K+ +  + +KP ++TY  L+
Sbjct: 258 RAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLV 317

Query: 323 NGLTKLEKFDKANDVLNEM-----------------------------------VDAGFV 382
            GL K+++F+   ++++EM                                   VD G  
Sbjct: 318 YGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVS 377

Query: 383 PNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNT 442
           PN  VYN LID  CK  K +EA  + D M    + P  VT+  L+  FC+  +++ A + 
Sbjct: 378 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 437

Query: 443 LEEILSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCK 502
           L E++  G  ++     S+I+  C       A  F   M+ K   P+    T L+ G C 
Sbjct: 438 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 497

Query: 503 DGKHLEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRIT 562
            GK  +A  L+  +  KG   S  T   L+ GL  AG + +AV++  EM E     +R+T
Sbjct: 498 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVT 557

Query: 563 YNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFK 622
           YN +I G C+EG + + F   +EMT +GI PD Y+   L++GLC  G+  +A    D   
Sbjct: 558 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 617

Query: 623 ASGLISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVA 682
                 N   Y  ++  +C+  ++E+   +  E+V + ++L+ + Y + I    ++ +  
Sbjct: 618 KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRK 677

Query: 683 AALQLRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALI 742
               L  +M  +G+ P    Y+S+I      G  ++A  + D M  EG +PN V YTA+I
Sbjct: 678 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 737

Query: 743 GGYCKLGQMDIAEATWLEMTSLNISPNKI------------------------------- 802
            G CK G ++ AE    +M  ++  PN++                               
Sbjct: 738 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLL 797

Query: 803 ----TYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKAFKT 812
               TY ++I G+C+ G +EEA+ L+++M   G+ PD +TY  + N  C+  D+ KA + 
Sbjct: 798 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 857

[Close]

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot
Match: Q9LVQ5 (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 349.0 bits (894), Expect = 1.5e-94
Identity = 223/743 (30.01%), Postives = 353/743 (47.51%), Query Frame = 0


Query: 109 IRSYCLLILLLVHSKFLPPARLLL--IRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVG 168
           ++  C+   +LV ++   PAR +L  + L+ GK               ++ +FG      
Sbjct: 72  VQLVCITTHILVRARMYDPARHILKELSLMSGK---------------SSFVFGALMTTY 131

Query: 169 RF--ECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANE 228
           R        +D+LI VY    R      ++++F L    G  PS+ TCN +L S+VK+ E
Sbjct: 132 RLCNSNPSVYDILIRVY---LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGE 191

Query: 229 -LEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNS 288
            +     + E++ + + PDV  F  +IN LC  G  E +  L+  MEK G +P +VTYN+
Sbjct: 192 DVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNT 251

Query: 289 VIHGLCQNGRLGDAFELKEKMTIEGV---------------------------------- 348
           V+H  C+ GR   A EL + M  +GV                                  
Sbjct: 252 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 311

Query: 349 -KPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAVVYNTLIDGYCKMGKINEAL 408
             P+ +TY+ LING +   K   A+ +LNEM+  G  PN V +N LIDG+   G   EAL
Sbjct: 312 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 371

Query: 409 KIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEILSQGFPINPVTCYSVIHWL 468
           K+  +M +K +TP+ V++  LL G CK+ + + A+     +   G  +  +T   +I  L
Sbjct: 372 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 431

Query: 469 CTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPAST 528
           C       A+     M      P     + L+ G CK G+   A E+  R+   G   + 
Sbjct: 432 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 491

Query: 529 ATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEE 588
              + LI+  C  G + EA+RI + M+  G + D  T+N L+   CK GKV E       
Sbjct: 492 IIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRC 551

Query: 589 MTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDAYCKANR 648
           MT+ GI P+  + + L+ G  N+G+   A  ++DE    G      TYG ++   CK   
Sbjct: 552 MTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGH 611

Query: 649 MEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSS 708
           + + EK    L      +++++YN  + A C++GN+A A+ L  +M  + I P   TY+S
Sbjct: 612 LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS 671

Query: 709 LIHGMCNIGRVEDAKHLIDEMREEG-LLPNVVCYTALIGGYCKLGQMDIAEATWLEMTSL 768
           LI G+C  G+   A     E    G +LPN V YT  + G  K GQ         +M +L
Sbjct: 672 LISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNL 731

Query: 769 NISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKA 811
             +P+ +T   MIDGY ++G +E+ N+LL +M      P++ TYN L +G+ K KD+  +
Sbjct: 732 GHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTS 791

[Close]

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot
Match: Q9LFC5 (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.8e-86
Identity = 196/666 (29.43%), Postives = 327/666 (49.10%), Query Frame = 0


Query: 105 FRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSV 164
           F+ T  S   +I +LV S  L  A+  L+R+I          S    +EI N L    S 
Sbjct: 109 FKHTSLSLSAMIHILVRSGRLSDAQSCLLRMI--------RRSGVSRLEIVNSLDSTFSN 168

Query: 165 VGRFECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANE 224
            G  +    FDLLI  Y  Q R L    A + F L   KG   S+  CN L+ SLV+   
Sbjct: 169 CGSND--SVFDLLIRTY-VQARKL--REAHEAFTLLRSKGFTVSIDACNALIGSLVRIGW 228

Query: 225 LEKCCEVF-EVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNS 284
           +E    V+ E+   GV  +V+    ++NALCK GKME     L  +++ G+ P++VTYN+
Sbjct: 229 VELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNT 288

Query: 285 VIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDAG 344
           +I      G + +AFEL   M  +G  P + TY+ +INGL K  K+++A +V  EM+ +G
Sbjct: 289 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 348

Query: 345 FVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQ 404
             P++  Y +L+   CK G + E  K+   M S+++ P  V F +++  F +S  +++A 
Sbjct: 349 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 408

Query: 405 NTLEEILSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGL 464
                +   G                                     P + + TIL+ G 
Sbjct: 409 MYFNSVKEAG-----------------------------------LIPDNVIYTILIQGY 468

Query: 465 CKDGKHLEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDR 524
           C+ G    A  L   +L++G      T N ++HGLC    + EA ++  EM ER    D 
Sbjct: 469 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 528

Query: 525 ITYNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDE 584
            T   LI G CK G ++    L ++M  + I+ D+ T N LL G    G +D A ++W +
Sbjct: 529 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWAD 588

Query: 585 FKASGLISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGN 644
             +  ++    +Y ++++A C    + +  ++++E+++K ++   ++ N  I+ +CR+GN
Sbjct: 589 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 648

Query: 645 VAAALQLRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREE--GLLPNVVCY 704
            +      + M S+G  P C +Y++LI+G      +  A  L+ +M EE  GL+P+V  Y
Sbjct: 649 ASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTY 708

Query: 705 TALIGGYCKLGQMDIAEATWLEMTSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKE 764
            +++ G+C+  QM  AE    +M    ++P++ TYT MI+G+    N+ EA  +  +M +
Sbjct: 709 NSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQ 726

Query: 765 SGIVPD 768
            G  PD
Sbjct: 769 RGFSPD 726

[Close]

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.8e-86
Identity = 225/810 (27.78%), Postives = 390/810 (48.15%), Query Frame = 0


Query: 52  SILSNSSLDSS-KCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIR 111
           SILS  +   S   ++++  +SP     LF    L  +PKT LNF ++ S + +++ ++ 
Sbjct: 68  SILSKPNWHKSPSLKSMVSAISPSHVSSLF---SLDLDPKTALNFSHWISQNPRYKHSVY 127

Query: 112 SYCLLILLLVHSKFLP---PARLLLIRLIDG---KLPVL------NSDSN-----KLHIE 171
           SY  L+ LL+++ ++      RLL+I+  D     L VL      N D       KL I 
Sbjct: 128 SYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIG 187

Query: 172 IANEL------FGLTSVVGRFECTHAFDLL---IHVYSTQFRNLCFSYAVDVFYLFARK- 231
             N L      FGL   + +       D +   I+ Y+      C    V+    +  K 
Sbjct: 188 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 247

Query: 232 ---GIFPSLKTCNFLLSSLVKANELEKCCEVF-EVMSQGVRPDVFLFTNVINALCKGGKM 291
              G+ P   T   L+    +  +L+   +VF E+  +G R +   +T++I+ LC   ++
Sbjct: 248 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 307

Query: 292 ENAMELLMNMEKLGISPNVVTYNSVIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVL 351
           + AM+L + M+     P V TY  +I  LC + R  +A  L ++M   G+KP++ TY+VL
Sbjct: 308 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 367

Query: 352 INGLTKLEKFDKANDVLNEMVDAGFVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNI 411
           I+ L    KF+KA ++L +M++ G +PN + YN LI+GYCK G I +A+ + ++M S+ +
Sbjct: 368 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 427

Query: 412 TPTSVTFYTLLQGFCKSNQIEQAQNTLEEILSQGFPINPVTCYSVIHWLCTKFRFHYALR 471
           +P + T+  L++G+CKSN + +A   L ++L +    + VT  S+I   C    F  A R
Sbjct: 428 SPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 487

Query: 472 FTTVMLLKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPASTATSNALIHGLC 531
             ++M  +   P     T ++  LCK  +  EA +L+  L +KG   +     ALI G C
Sbjct: 488 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 547

Query: 532 GAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIY 591
            AGK+ EA  +L++ML +    + +T+N LI G C +GK++E   L+E+M   G+QP + 
Sbjct: 548 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 607

Query: 592 TCNFLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDAYCKANRMEDVEKLFNEL 651
           T   L++ L   G  D A   + +  +SG   + HTY   +  YC+  R+ D E +  ++
Sbjct: 608 TDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM 667

Query: 652 VTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSSLIH-------- 711
               +  +   Y+  I+ +   G    A  +   M+  G  P+  T+ SLI         
Sbjct: 668 RENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYG 727

Query: 712 ----------GMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYCKLGQMDIAEATW 771
                      M N+   +    L+++M E  + PN   Y  LI G C++G + +AE  +
Sbjct: 728 KQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVF 787

Query: 772 LEM-TSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCK 811
             M  +  ISP+++ +  ++   CKL    EA  ++  M   G +P + +   L  G  K
Sbjct: 788 DHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYK 847

[Close]

BLAST of CmaCh16G005160 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 748.0 bits (1930), Expect = 8.0e-216
Identity = 380/744 (51.08%), Postives = 512/744 (68.82%), Query Frame = 0


Query: 50  VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTI 109
           +SS+LS  SLD  +C+ L+  LSP +FD+LF     K NPKT L+FF  ASDSF F F++
Sbjct: 67  LSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSL 126

Query: 110 RSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFE 169
           RSYCLLI LL+ +  L  AR++LIRLI+G +PVL        + IA+ +  L+       
Sbjct: 127 RSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEI 186

Query: 170 CTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANELEKCC 229
                DLLI VY TQF+      A+DVF + A KG+FPS  TCN LL+SLV+ANE +KCC
Sbjct: 187 RRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCC 246

Query: 230 EVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSVIHGLC 289
           E F+V+ +GV PDV+LFT  INA CKGGK+E A++L   ME+ G++PNVVT+N+VI GL 
Sbjct: 247 EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 306

Query: 290 QNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAV 349
             GR  +AF  KEKM   G++P+LITYS+L+ GLT+ ++   A  VL EM   GF PN +
Sbjct: 307 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 366

Query: 350 VYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEI 409
           VYN LID + + G +N+A++I+D+MVSK ++ TS T+ TL++G+CK+ Q + A+  L+E+
Sbjct: 367 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 426

Query: 410 LSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKH 469
           LS GF +N  +  SVI  LC+   F  ALRF   MLL+N  P   LLT L+ GLCK GKH
Sbjct: 427 LSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKH 486

Query: 470 LEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTL 529
            +A ELWF+ L KG    T TSNAL+HGLC AGK+ EA RI KE+L RG  +DR++YNTL
Sbjct: 487 SKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 546

Query: 530 ILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGL 589
           I GCC + K++E F   +EM  +G++PD YT + L+ GL N  K+++AI+ WD+ K +G+
Sbjct: 547 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGM 606

Query: 590 ISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQ 649
           + +V+TY VM+D  CKA R E+ ++ F+E+++K ++ N++VYN  IRA+CR+G ++ AL+
Sbjct: 607 LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALE 666

Query: 650 LRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYC 709
           LR+DMK KGI P  ATY+SLI GM  I RVE+AK L +EMR EGL PNV  YTALI GY 
Sbjct: 667 LREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 726

Query: 710 KLGQMDIAEATWLEMTSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVV 769
           KLGQM   E    EM S N+ PNKITYTVMI GY + GN+ EA+ LL++M+E GIVPD +
Sbjct: 727 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 786

Query: 770 TYNALTNGFCKGKDMDKAFKTCDE 794
           TY     G+ K   + +AFK  DE
Sbjct: 787 TYKEFIYGYLKQGGVLEAFKGSDE 810

[Close]

BLAST of CmaCh16G005160 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 748.0 bits (1930), Expect = 8.0e-216
Identity = 380/744 (51.08%), Postives = 512/744 (68.82%), Query Frame = 0


Query: 50  VSSILSNSSLDSSKCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTI 109
           +SS+LS  SLD  +C+ L+  LSP +FD+LF     K NPKT L+FF  ASDSF F F++
Sbjct: 67  LSSVLSKRSLDYEQCKQLITVLSPLEFDRLFPEFRSKVNPKTALDFFRLASDSFSFSFSL 126

Query: 110 RSYCLLILLLVHSKFLPPARLLLIRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVGRFE 169
           RSYCLLI LL+ +  L  AR++LIRLI+G +PVL        + IA+ +  L+       
Sbjct: 127 RSYCLLIGLLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLCFDEEI 186

Query: 170 CTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANELEKCC 229
                DLLI VY TQF+      A+DVF + A KG+FPS  TCN LL+SLV+ANE +KCC
Sbjct: 187 RRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCC 246

Query: 230 EVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNSVIHGLC 289
           E F+V+ +GV PDV+LFT  INA CKGGK+E A++L   ME+ G++PNVVT+N+VI GL 
Sbjct: 247 EAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 306

Query: 290 QNGRLGDAFELKEKMTIEGVKPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAV 349
             GR  +AF  KEKM   G++P+LITYS+L+ GLT+ ++   A  VL EM   GF PN +
Sbjct: 307 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 366

Query: 350 VYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEI 409
           VYN LID + + G +N+A++I+D+MVSK ++ TS T+ TL++G+CK+ Q + A+  L+E+
Sbjct: 367 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 426

Query: 410 LSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKH 469
           LS GF +N  +  SVI  LC+   F  ALRF   MLL+N  P   LLT L+ GLCK GKH
Sbjct: 427 LSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKH 486

Query: 470 LEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTL 529
            +A ELWF+ L KG    T TSNAL+HGLC AGK+ EA RI KE+L RG  +DR++YNTL
Sbjct: 487 SKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTL 546

Query: 530 ILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGL 589
           I GCC + K++E F   +EM  +G++PD YT + L+ GL N  K+++AI+ WD+ K +G+
Sbjct: 547 ISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGM 606

Query: 590 ISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQ 649
           + +V+TY VM+D  CKA R E+ ++ F+E+++K ++ N++VYN  IRA+CR+G ++ AL+
Sbjct: 607 LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALE 666

Query: 650 LRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYC 709
           LR+DMK KGI P  ATY+SLI GM  I RVE+AK L +EMR EGL PNV  YTALI GY 
Sbjct: 667 LREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYG 726

Query: 710 KLGQMDIAEATWLEMTSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVV 769
           KLGQM   E    EM S N+ PNKITYTVMI GY + GN+ EA+ LL++M+E GIVPD +
Sbjct: 727 KLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSI 786

Query: 770 TYNALTNGFCKGKDMDKAFKTCDE 794
           TY     G+ K   + +AFK  DE
Sbjct: 787 TYKEFIYGYLKQGGVLEAFKGSDE 810

[Close]

BLAST of CmaCh16G005160 vs. TAIR 10
Match: AT5G59900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 5.8e-97
Identity = 231/801 (28.84%), Postives = 378/801 (47.19%), Query Frame = 0


Query: 83  VGLKANPKTCLNFFYFASDSFKFRFTIRSYCLLILLLVHSKFLPPARLLLIRLIDGKLPV 142
           +G   +PK  L FF F      F  +  S+C+LI  LV +    PA  LL  L+   L  
Sbjct: 78  IGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLL---LRA 137

Query: 143 LNSDSNKLHIEIANELFGLTSVVGRFECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFAR 202
           L         ++ N LF       +   + +FDLLI  Y    R L     V VF +   
Sbjct: 138 LKPS------DVFNVLFSCYEKC-KLSSSSSFDLLIQHYVRSRRVL---DGVLVFKMMIT 197

Query: 203 K-GIFPSLKTCNFLLSSLVKANELEKCCEVF-EVMSQGVRPDVFLFTNVINALCKGGKME 262
           K  + P ++T + LL  LVK        E+F +++S G+RPDV+++T VI +LC+   + 
Sbjct: 198 KVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLS 257

Query: 263 NAMELLMNMEKLGISPNVVTYNSVIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVLI 322
            A E++ +ME  G   N+V YN +I GLC+  ++ +A  +K+ +  + +KP ++TY  L+
Sbjct: 258 RAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLV 317

Query: 323 NGLTKLEKFDKANDVLNEM-----------------------------------VDAGFV 382
            GL K+++F+   ++++EM                                   VD G  
Sbjct: 318 YGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVS 377

Query: 383 PNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNT 442
           PN  VYN LID  CK  K +EA  + D M    + P  VT+  L+  FC+  +++ A + 
Sbjct: 378 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 437

Query: 443 LEEILSQGFPINPVTCYSVIHWLCTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCK 502
           L E++  G  ++     S+I+  C       A  F   M+ K   P+    T L+ G C 
Sbjct: 438 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 497

Query: 503 DGKHLEATELWFRLLEKGSPASTATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRIT 562
            GK  +A  L+  +  KG   S  T   L+ GL  AG + +AV++  EM E     +R+T
Sbjct: 498 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVT 557

Query: 563 YNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFK 622
           YN +I G C+EG + + F   +EMT +GI PD Y+   L++GLC  G+  +A    D   
Sbjct: 558 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 617

Query: 623 ASGLISNVHTYGVMMDAYCKANRMEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVA 682
                 N   Y  ++  +C+  ++E+   +  E+V + ++L+ + Y + I    ++ +  
Sbjct: 618 KGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRK 677

Query: 683 AALQLRDDMKSKGIFPTCATYSSLIHGMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALI 742
               L  +M  +G+ P    Y+S+I      G  ++A  + D M  EG +PN V YTA+I
Sbjct: 678 LFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 737

Query: 743 GGYCKLGQMDIAEATWLEMTSLNISPNKI------------------------------- 802
            G CK G ++ AE    +M  ++  PN++                               
Sbjct: 738 NGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLL 797

Query: 803 ----TYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKAFKT 812
               TY ++I G+C+ G +EEA+ L+++M   G+ PD +TY  + N  C+  D+ KA + 
Sbjct: 798 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 857

[Close]

BLAST of CmaCh16G005160 vs. TAIR 10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-95
Identity = 223/743 (30.01%), Postives = 353/743 (47.51%), Query Frame = 0


Query: 109 IRSYCLLILLLVHSKFLPPARLLL--IRLIDGKLPVLNSDSNKLHIEIANELFGLTSVVG 168
           ++  C+   +LV ++   PAR +L  + L+ GK               ++ +FG      
Sbjct: 112 VQLVCITTHILVRARMYDPARHILKELSLMSGK---------------SSFVFGALMTTY 171

Query: 169 RF--ECTHAFDLLIHVYSTQFRNLCFSYAVDVFYLFARKGIFPSLKTCNFLLSSLVKANE 228
           R        +D+LI VY    R      ++++F L    G  PS+ TCN +L S+VK+ E
Sbjct: 172 RLCNSNPSVYDILIRVY---LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGE 231

Query: 229 -LEKCCEVFEVMSQGVRPDVFLFTNVINALCKGGKMENAMELLMNMEKLGISPNVVTYNS 288
            +     + E++ + + PDV  F  +IN LC  G  E +  L+  MEK G +P +VTYN+
Sbjct: 232 DVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNT 291

Query: 289 VIHGLCQNGRLGDAFELKEKMTIEGV---------------------------------- 348
           V+H  C+ GR   A EL + M  +GV                                  
Sbjct: 292 VLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM 351

Query: 349 -KPSLITYSVLINGLTKLEKFDKANDVLNEMVDAGFVPNAVVYNTLIDGYCKMGKINEAL 408
             P+ +TY+ LING +   K   A+ +LNEM+  G  PN V +N LIDG+   G   EAL
Sbjct: 352 IHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEAL 411

Query: 409 KIRDVMVSKNITPTSVTFYTLLQGFCKSNQIEQAQNTLEEILSQGFPINPVTCYSVIHWL 468
           K+  +M +K +TP+ V++  LL G CK+ + + A+     +   G  +  +T   +I  L
Sbjct: 412 KMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGL 471

Query: 469 CTKFRFHYALRFTTVMLLKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPAST 528
           C       A+     M      P     + L+ G CK G+   A E+  R+   G   + 
Sbjct: 472 CKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNG 531

Query: 529 ATSNALIHGLCGAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEE 588
              + LI+  C  G + EA+RI + M+  G + D  T+N L+   CK GKV E       
Sbjct: 532 IIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRC 591

Query: 589 MTNQGIQPDIYTCNFLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDAYCKANR 648
           MT+ GI P+  + + L+ G  N+G+   A  ++DE    G      TYG ++   CK   
Sbjct: 592 MTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGH 651

Query: 649 MEDVEKLFNELVTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSS 708
           + + EK    L      +++++YN  + A C++GN+A A+ L  +M  + I P   TY+S
Sbjct: 652 LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS 711

Query: 709 LIHGMCNIGRVEDAKHLIDEMREEG-LLPNVVCYTALIGGYCKLGQMDIAEATWLEMTSL 768
           LI G+C  G+   A     E    G +LPN V YT  + G  K GQ         +M +L
Sbjct: 712 LISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNL 771

Query: 769 NISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCKGKDMDKA 811
             +P+ +T   MIDGY ++G +E+ N+LL +M      P++ TYN L +G+ K KD+  +
Sbjct: 772 GHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTS 831

[Close]

BLAST of CmaCh16G005160 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 320.5 bits (820), Expect = 4.1e-87
Identity = 225/810 (27.78%), Postives = 390/810 (48.15%), Query Frame = 0


Query: 52  SILSNSSLDSS-KCRALLPHLSPFQFDQLFFSVGLKANPKTCLNFFYFASDSFKFRFTIR 111
           SILS  +   S   ++++  +SP     LF    L  +PKT LNF ++ S + +++ ++ 
Sbjct: 68  SILSKPNWHKSPSLKSMVSAISPSHVSSLF---SLDLDPKTALNFSHWISQNPRYKHSVY 127

Query: 112 SYCLLILLLVHSKFLP---PARLLLIRLIDG---KLPVL------NSDSN-----KLHIE 171
           SY  L+ LL+++ ++      RLL+I+  D     L VL      N D       KL I 
Sbjct: 128 SYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIG 187

Query: 172 IANEL------FGLTSVVGRFECTHAFDLL---IHVYSTQFRNLCFSYAVDVFYLFARK- 231
             N L      FGL   + +       D +   I+ Y+      C    V+    +  K 
Sbjct: 188 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 247

Query: 232 ---GIFPSLKTCNFLLSSLVKANELEKCCEVF-EVMSQGVRPDVFLFTNVINALCKGGKM 291
              G+ P   T   L+    +  +L+   +VF E+  +G R +   +T++I+ LC   ++
Sbjct: 248 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 307

Query: 292 ENAMELLMNMEKLGISPNVVTYNSVIHGLCQNGRLGDAFELKEKMTIEGVKPSLITYSVL 351
           + AM+L + M+     P V TY  +I  LC + R  +A  L ++M   G+KP++ TY+VL
Sbjct: 308 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 367

Query: 352 INGLTKLEKFDKANDVLNEMVDAGFVPNAVVYNTLIDGYCKMGKINEALKIRDVMVSKNI 411
           I+ L    KF+KA ++L +M++ G +PN + YN LI+GYCK G I +A+ + ++M S+ +
Sbjct: 368 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 427

Query: 412 TPTSVTFYTLLQGFCKSNQIEQAQNTLEEILSQGFPINPVTCYSVIHWLCTKFRFHYALR 471
           +P + T+  L++G+CKSN + +A   L ++L +    + VT  S+I   C    F  A R
Sbjct: 428 SPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 487

Query: 472 FTTVMLLKNFRPSDQLLTILVCGLCKDGKHLEATELWFRLLEKGSPASTATSNALIHGLC 531
             ++M  +   P     T ++  LCK  +  EA +L+  L +KG   +     ALI G C
Sbjct: 488 LLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 547

Query: 532 GAGKMAEAVRILKEMLERGFSLDRITYNTLILGCCKEGKVEECFRLKEEMTNQGIQPDIY 591
            AGK+ EA  +L++ML +    + +T+N LI G C +GK++E   L+E+M   G+QP + 
Sbjct: 548 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 607

Query: 592 TCNFLLYGLCNAGKLDDAIKLWDEFKASGLISNVHTYGVMMDAYCKANRMEDVEKLFNEL 651
           T   L++ L   G  D A   + +  +SG   + HTY   +  YC+  R+ D E +  ++
Sbjct: 608 TDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM 667

Query: 652 VTKKMELNSIVYNIFIRAHCRNGNVAAALQLRDDMKSKGIFPTCATYSSLIH-------- 711
               +  +   Y+  I+ +   G    A  +   M+  G  P+  T+ SLI         
Sbjct: 668 RENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYG 727

Query: 712 ----------GMCNIGRVEDAKHLIDEMREEGLLPNVVCYTALIGGYCKLGQMDIAEATW 771
                      M N+   +    L+++M E  + PN   Y  LI G C++G + +AE  +
Sbjct: 728 KQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVF 787

Query: 772 LEM-TSLNISPNKITYTVMIDGYCKLGNMEEANNLLSKMKESGIVPDVVTYNALTNGFCK 811
             M  +  ISP+++ +  ++   CKL    EA  ++  M   G +P + +   L  G  K
Sbjct: 788 DHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYK 847

The following BLAST results are available for this feature:

BLAST of CmaCh16G005160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940A6	1.1e-214	51.08	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop...	[more]
Q9FJE6	8.1e-96	28.84	Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th...	[more]
Q9LVQ5	1.5e-94	30.01	Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX...	[more]
Q9LFC5	5.8e-86	29.43	Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX...	[more]
Q9LSL9	5.8e-86	27.78	Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh16G005160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19440.1	8.0e-216	51.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G19440.2	8.0e-216	51.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G59900.1	5.8e-97	28.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G55840.1	1.1e-95	30.01	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G65560.1	4.1e-87	27.78	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 587..656 e-value: 2.3E-17 score: 65.1 coord: 516..586 e-value: 3.0E-22 score: 81.1 coord: 443..515 e-value: 7.9E-12 score: 47.1 coord: 236..305 e-value: 5.3E-23 score: 83.5 coord: 657..726 e-value: 5.4E-20 score: 73.7 coord: 306..374 e-value: 6.4E-21 score: 76.7 coord: 375..442 e-value: 3.7E-10 score: 41.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 727..816 e-value: 5.7E-29 score: 102.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 85..235 e-value: 4.6E-6 score: 28.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 276..324 e-value: 1.5E-16 score: 60.3 coord: 346..395 e-value: 3.0E-16 score: 59.4 coord: 766..813 e-value: 1.7E-12 score: 47.3 coord: 523..570 e-value: 1.2E-15 score: 57.4 coord: 696..745 e-value: 3.0E-16 score: 59.4 coord: 627..675 e-value: 9.6E-15 score: 54.5
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 238..270 e-value: 3.3E-7 score: 29.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 211..235 e-value: 0.074 score: 13.3 coord: 490..519 e-value: 2.7E-6 score: 27.2 coord: 457..483 e-value: 0.011 score: 16.0 coord: 595..622 e-value: 2.9E-6 score: 27.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 245..278 e-value: 3.8E-6 score: 24.7 coord: 559..590 e-value: 2.6E-6 score: 25.2 coord: 769..802 e-value: 2.0E-6 score: 25.6 coord: 524..558 e-value: 9.0E-10 score: 36.1 coord: 594..627 e-value: 1.4E-7 score: 29.2 coord: 629..663 e-value: 7.3E-9 score: 33.3 coord: 279..312 e-value: 2.3E-8 score: 31.7 coord: 665..698 e-value: 2.1E-9 score: 35.0 coord: 211..242 e-value: 4.0E-4 score: 18.4 coord: 314..348 e-value: 7.8E-9 score: 33.2 coord: 492..522 e-value: 2.3E-7 score: 28.6 coord: 699..732 e-value: 1.3E-6 score: 26.2 coord: 349..382 e-value: 6.8E-9 score: 33.4 coord: 734..768 e-value: 2.3E-11 score: 41.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 627..661 score: 12.364404
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 382..416 score: 9.788499
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 277..311 score: 13.230347
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 767..801 score: 11.180584
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 697..731 score: 11.377887
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 487..521 score: 11.673842
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 732..766 score: 14.18398
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 347..381 score: 13.252269
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 522..556 score: 13.482456
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 312..346 score: 11.684803
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 557..591 score: 11.345003
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 592..626 score: 11.345003
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 662..696 score: 12.660359
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 242..276 score: 12.057487
None	No IPR available	PANTHER	PTHR47938:SF7	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 28..807
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 28..807
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 465..796

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005160.1	CmaCh16G005160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding