CmaCh16G005120 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G005120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Profilin
Location	Cma_Chr16: 2632384 .. 2634969 (-)
RNA-Seq Expression	CmaCh16G005120
Synteny	CmaCh16G005120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTCTTCCAAATTTTCAGCCATTTACGCTCGCGAGATCTTTGCTAGAGCTCACTGGTTCATTTCCATGGTAGCTTAGACGCCTTGTAGGTTTCGCTTAAATGGATTGGGCATTCGTCCGCAAAGCTTGGGACAAATGGGCTTCCGGCAGCATTGGCAGCTTCGGTAACCAACACTGTCCGCCATTTTCAATTCGTTTAGAATATCGATGTGCTCAAATATGATTTTAATGGATGTTTGTTTGTTTGTCGTAGGCCAGCCATTGAAAGCTGCCCTGTTGATCAATTATGATCCAACTGGACCTTCCCGTTTGCTTTCGACCATGTAAGCACTCTTCATTTCCGATTTGATTGTACTCATTACTTTCAATTTTCTGTTTTCTTTCTTGTATAGGGTTCTTGGCGATTGAAAAATCTTTTGTTTTCTGAGATTAAACAATTTTCAAATTCAATAAGCATATTTCGTAATGAATTGTTTTTATCTCCAAGTAGTTCATCTTTTCCTAATTTTTACTTATTATGCTAATTCTACTGTCTTTCATAATTTTACAAGTTCTAATCGCGTAGTTCTAAGTTCATATTTGGGATTAGGGTTAGGGTTGGAACTAGCTCAAACTGTTAGGGATTTGGTTGTGCTATAACTTGTCCCAGTTTGATAATTCTAGAAGTTAAATTGTCCCAGTTTTTTTCTAGTTCAATCTCTGTCTTTGAAACATGAATCTTCTGGTTGTGGGTCTTCTCTGTATTTTCATTTAAACCTGTTTTGGAAGCTCTAAGAGCTTGTTTGGTGTTTGGCCTTCAGTGCAGAACAAGAAGGAATATTGCTTAATCCTATAGAATTGAATCAGTTTATCGATTTCATCAAACGTGACAAACCCCAAAATGAGAGTTTCAGCATCGGCTCAAATCAATGTTAGTGTTCTTTTGTGCTTTTCGTTCATTTCTTCTGTTACACATTTTGTTTTCTTGAATTGATGGCAATATTCAAACATTATTGTTTAACGCTACATTATTATGTGTGTAAAGTGAGAGTTAATTTAAGATTAGTTGAAGGCATTATGTTAGTTATTGTGGGTGAGATCCCACATCTGTTGGAGAGGGGAATAGAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGTGTTTTAAAACCTTGAGGGGAAGTCCAGAAGGGAATGCTCAAAGAAGACCATATTTGCTAACGGTGGGCTTCAGCTATTACAAATGGTACCAAAGCCAGACACCGGGTAGTGTGCCAGCGAGGACGCGGCACCCCGAAGGGAGTGGATTGTGAAATCCCTCATCGGTTGGAGAGGAGAATGAAACATTCTAAGGATGTGGAAACCTCTTTCTAGCATATGCATTTTAAAACCTTAAAGGGAAAGCCCAAAGAAAACAATATCGGTTAGTAGTGGGATTGAACTATTACATTGTCACCCTTGAAAAATGGTCATAGGCTCATGTGTATAAAGATGTATATTCTTTTTCCCGGGTTTAGACCCACCCAAGTTTAGCAGCCTCAAAATAGGGGAGAACCCAAAAAAAGGCGTGGGAGGCCTCAAACTCATCCGGAGTTGTGGAAAAAAGAAAGTAGAGCAATAATATTATTTTAAAGTACGAGGGCAGGATAAGATATTATCTGTTGAGCCAAAAGGAATTGCAAAAAGTGAAAAAAAGAAAAAACTTCGCAGTGAGTAATAACAGAAGAACAATGCTTATCCAGAACATTTCTGATTTCAACTTGGCTTTTCTATCTTTACCTTTGAAGTTGGGGCGACTGCTTTTAAGATAATATTCTCATCTTCATACCATCAATGAAATTGTTTCTTTATAATATGCATGTAATATTCTCATATAATAGCAACCACAGAAGGGACCAAAACTGGCAATATTTGGAATTGTTTGTCTGCAGTTCATGCTGGATTATAGTTTGGTTTTTATACGCACGAATCTAACCTTAATAGAACTTTATTTCAGACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGCGTTGTAATAGTGCAAACAACAGCCTTTATTTTGGTTGCTATGTAAGTATAGTTTACTGCTAAAAACTGCTTTGTTTTTCCCACTTATCCAAAGATTTCTTGCATTGGTAGAGACTCCATAAAGTTCAAAGAACCAGAAGATTCTCGTTTATGTGTGCTTTTTTCTTTTTTTTTCCCTAAAATAGAAGTCCTCTTAAACCCTTACAGGTATGATGGTTCGATTGCAGCAGCATCTCGCGCTATGGCGTCTGCCGATCTGTTATCTTGGCAGTTAGGCAGGAAAAATCTTTAGTTGCCTTGAAGTAGAACCTTGTATGAACTGATGTAGAATTGCACTAGAGTACTGAATATATTTTTAAGCTTTGGACCTCGGTTTTGACTGTTATGAAACTATAGAACTACTGATAGTTATCAGGGACATGGAGCATATATGGCAGAGATTTGGTAGAGATATATTTAGGAGATTATATCTTAAATCTGTTAAACCTATATTTAGTAAACTGAAATTATATATATCTCATTAGACGGTC

mRNA sequence

AAGTCTTCCAAATTTTCAGCCATTTACGCTCGCGAGATCTTTGCTAGAGCTCACTGGTTCATTTCCATGGTAGCTTAGACGCCTTGTAGGTTTCGCTTAAATGGATTGGGCATTCGTCCGCAAAGCTTGGGACAAATGGGCTTCCGGCAGCATTGGCAGCTTCGGCCAGCCATTGAAAGCTGCCCTGTTGATCAATTATGATCCAACTGGACCTTCCCGTTTGCTTTCGACCATTGCAGAACAAGAAGGAATATTGCTTAATCCTATAGAATTGAATCAGTTTATCGATTTCATCAAACGTGACAAACCCCAAAATGAGAGTTTCAGCATCGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGCGTTGTAATAGTGCAAACAACAGCCTTTATTTTGGTTGCTATGTATGATGGTTCGATTGCAGCAGCATCTCGCGCTATGGCGTCTGCCGATCTGTTATCTTGGCAGTTAGGCAGGAAAAATCTTTAGTTGCCTTGAAGTAGAACCTTGTATGAACTGATGTAGAATTGCACTAGAGTACTGAATATATTTTTAAGCTTTGGACCTCGGTTTTGACTGTTATGAAACTATAGAACTACTGATAGTTATCAGGGACATGGAGCATATATGGCAGAGATTTGGTAGAGATATATTTAGGAGATTATATCTTAAATCTGTTAAACCTATATTTAGTAAACTGAAATTATATATATCTCATTAGACGGTC

Coding sequence (CDS)

ATGGATTGGGCATTCGTCCGCAAAGCTTGGGACAAATGGGCTTCCGGCAGCATTGGCAGCTTCGGCCAGCCATTGAAAGCTGCCCTGTTGATCAATTATGATCCAACTGGACCTTCCCGTTTGCTTTCGACCATTGCAGAACAAGAAGGAATATTGCTTAATCCTATAGAATTGAATCAGTTTATCGATTTCATCAAACGTGACAAACCCCAAAATGAGAGTTTCAGCATCGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGCGTTGTAATAGTGCAAACAACAGCCTTTATTTTGGTTGCTATGTATGATGGTTCGATTGCAGCAGCATCTCGCGCTATGGCGTCTGCCGATCTGTTATCTTGGCAGTTAGGCAGGAAAAATCTTTAG

Protein sequence

MDWAFVRKAWDKWASGSIGSFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELNQFIDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVAMYDGSIAAASRAMASADLLSWQLGRKNL

Homology

[Close]

BLAST of CmaCh16G005120 vs. TAIR 10
Match: AT4G19400.1 (Profilin family protein )

HSP 1 Score: 197.2 bits (500), Expect = 9.2e-51
Identity = 93/147 (63.27%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 1   MDWAFVRKAWDKW-ASGSIGSFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELN 60
           MD AFV +AWDKW  +G++GS G PLKAA+LINYDPTGPSRLLSTIA+QEGI + P++L 
Sbjct: 1   MDSAFVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLK 60

Query: 61  QFIDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVA 120
           QFIDF++      E+F +GSNQYI+TS+HENWF ARC+NT + AGEG +++QT  ++LVA
Sbjct: 61  QFIDFMRCGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVYVLVA 120

Query: 121 MYDGSIAAASRAMASADLLSWQLGRKN 147
           +YDGSI +AS+AMA+AD  + QL RKN
Sbjct: 121 LYDGSIGSASQAMAAADQFASQLSRKN 147

[Close]

BLAST of CmaCh16G005120 vs. TAIR 10
Match: AT4G19410.2 (Pectinacetylesterase family protein )

HSP 1 Score: 197.2 bits (500), Expect = 9.2e-51
Identity = 93/147 (63.27%), Postives = 120/147 (81.63%), Query Frame = 0


Query: 1   MDWAFVRKAWDKW-ASGSIGSFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELN 60
           MD AFV +AWDKW  +G++GS G PLKAA+LINYDPTGPSRLLSTIA+QEGI + P++L 
Sbjct: 370 MDSAFVDRAWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTIAKQEGIDIYPVDLK 429

Query: 61  QFIDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVA 120
           QFIDF++      E+F +GSNQYI+TS+HENWF ARC+NT + AGEG +++QT  ++LVA
Sbjct: 430 QFIDFMRCGNLPTETFVLGSNQYIITSIHENWFAARCLNTSQPAGEGAIVMQTAVYVLVA 489

Query: 121 MYDGSIAAASRAMASADLLSWQLGRKN 147
           +YDGSI +AS+AMA+AD  + QL RKN
Sbjct: 490 LYDGSIGSASQAMAAADQFASQLSRKN 516

The following BLAST results are available for this feature:

BLAST of CmaCh16G005120 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G005120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19400.1	9.2e-51	63.27	Profilin family protein	[more]
AT4G19410.2	9.2e-51	63.27	Pectinacetylesterase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.30	Dynein light chain 2a, cytoplasmic	coord: 9..140 e-value: 4.8E-10 score: 41.6
None	No IPR available	PANTHER	PTHR36780	OS05G0241400 PROTEIN	coord: 1..147
None	No IPR available	PANTHER	PTHR36780:SF1	OS05G0241400 PROTEIN	coord: 1..147
IPR005455	Profilin	PFAM	PF00235	Profilin	coord: 42..131 e-value: 3.5E-11 score: 43.4
IPR036140	Profilin superfamily	SUPERFAMILY	55770	Profilin (actin-binding protein)	coord: 10..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G005120.1	CmaCh16G005120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003779	actin binding