CmaCh16G004970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G004970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrotrans_gag domain-containing protein
Location	Cma_Chr16: 2541216 .. 2542516 (+)
RNA-Seq Expression	CmaCh16G004970
Synteny	CmaCh16G004970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTTAACCTCCTTGGTTTGGAGAGGATACCGACCCCTTAGTTGCTAAACGCTGGGTTTTGGGGTTAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCGTACTCCGATCTTAGAAACTCGGCATTACTGGTGGAACTGTGCCTTAACCGTAAAGATGTTTGAAGTAGAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTAATGCTTTGTTCTTCCTCCCAAAAACTGAATTCCACACTCCCTCTCTGGTTTAATGCTTTGTTCTGTTGCTTTTGTTAGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGGTAGTTTGTTCTTTGTTTCATTTCATTTCAATATAGTTATTAAAACAACATACAAATTATGAATGTAAGTATAAATTTTAGAACACATCAGCATCCCAATCGAACGTGCTTAGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

mRNA sequence

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

Coding sequence (CDS)

ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGTTTAATCAGGGAAGGGCTTAGAGTAGTTGCTGCTAGACAGACTACTGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATACTTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTCGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAATTGGGACAAGGAAACAGAACCGTGACTGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATGAAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTTTGTCAAAGAAAAGGGTAGCAGCAAACCAGATGGGAGGTTTCAGTTATGGATCATCCTCACCTTTCAATGCCTGCTTATGATTAGTTATAGTTCTCTTAAAGTTTCATTGTTTAGGAAGTTTATAATGGTGGAGTTTATTGGCTTAATGCGTCTCTACAGCTACTTTATGTTCTTTGTTCCATTTCCTCACACTAACGTGTCCATTGCACTCGATCCAAAGCCAAACGCAGTCTACCGGGCCATGAACAAGCTAATTTATTCCAAACACAAGAACAAGCTAATCTGGAAATGTTACATTTCAATCAAAAGGAACACAAAAATACACAACCAAAACGAGGGAAGGGAGGGAGTGAGTGAGCAAAGAAGCCGCGGATTAGGACCTCTTCCTCTTCAAGAACCTCATATTGCTCATCTGAACCTACATATTTAG

Protein sequence

MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTTEEHNSKFNQFFVCCSDEQKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSSLKHEKHRELWKLGQGNRTVTEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYFVKEKGSSKPDGRFQLWIILTFQCLLMISYSSLKVSLFRKFIMVEFIGLMRLYSYFMFFVPFPHTNVSIALDPKPNAVYRAMNKLIYSKHKNKLIWKCYISIKRNTKIHNQNEGREGVSEQRSRGLGPLPLQEPHIAHLNLHI

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh16G004970 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G004970 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 62..159 e-value: 7.3E-16 score: 58.2
None	No IPR available	PANTHER	PTHR34482:SF14	RETROTRANSPOSON GAG DOMAIN-CONTAINING PROTEIN-RELATED	coord: 49..170
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 49..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004970.1	CmaCh16G004970.1	mRNA