CmaCh16G004950 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G004950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionVQ motif-containing protein 22-like
LocationCma_Chr16: 2533970 .. 2534581 (+)
RNA-Seq ExpressionCmaCh16G004950
SyntenyCmaCh16G004950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

mRNA sequence

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

Coding sequence (CDS)

ATGTCCGGCCCTGGCGATTGGCTTCAATTTTACCATCAAAATCTTCCTACCACGGCGGCGCCACCGCCTTCCGATCAATCCACCTCCGAGATGATCTTCGTCGATCGAGTTTCCGACGCCATCGCCTCCGCAAACACCGGCGCTTCCACTGGCTTGAATCCGGAACGTCGTGTAGCAAAGCCGGTTCGCCGCCGGTCCAGGACTTCTCGGCGGACTCCGACGACCTTGCTCAATACAGACACAACTAATTTCAGAGCGATGGTTCAACAATTCACCGGCGGTCCAACTCCGCCTTTCGCCTCATCGATTTCCCCCAATTTTTCGTTAGGGTTCGGCGCGATTCCTCAATCGAATTCCGGCTTGATTTCTCCGCCGTCTGGTTATCCGCTGCAGTTTTACCATCACAACCCCCAACCGTTCGTGATTCCAGCATCCGCACACGGCGGCGAATTTCTTCAGAGGCTATCCGCCGCGAAGCCAGGAAATGGCGGAGTCGCCGCAGACGGATTTCTGATGGAAAGTGCAGTTTCTTCTCAAATTCCTCCCGCCGGAGCTTCTGCAGATTCCTCCAACAAAAGCAACGGCGGTAGTGGCGGCGGATTTCTGTTCTGA

Protein sequence

MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPERRVAKPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSISPNFSLGFGAIPQSNSGLISPPSGYPLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQIPPAGASADSSNKSNGGSGGGFLF
Homology
BLAST of CmaCh16G004950 vs. ExPASy Swiss-Prot
Match: Q9LIE6 (VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.4e-15
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGLISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

BLAST of CmaCh16G004950 vs. TAIR 10
Match: AT4G15120.1 (VQ motif-containing protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-16
Identity = 78/202 (38.61%), Postives = 94/202 (46.53%), Query Frame = 0

Query: 6   DWLQFY-HQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPE-RRVAKPVR 65
           DW QFY +Q   TTA    +  +T+                T A + L+P+ RRVAKP R
Sbjct: 7   DWSQFYNNQTFFTTATSTVTTTTTTA---------------TSADSPLSPDNRRVAKPTR 66

Query: 66  RRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFASSISPNFSLGFGAIPQSNSGLI 125
           RRSR SRRTPTTL NTDT NFRAMVQQFTGGP+   F SS S  FSL         +G+ 
Sbjct: 67  RRSRASRRTPTTLFNTDTANFRAMVQQFTGGPSAVAFGSSPSSGFSL---TSSDPTAGVS 126

Query: 126 SPPSGY---PLQFYHHNPQPFVIPASAHGGEFLQRLSAAKPGNGGVAADGFLMESAVSSQ 185
           S P  Y     Q  H+       P        +  LS        VA DGF+        
Sbjct: 127 SSPWQYANLQNQMAHNELMQQQRPYMFSSSNNVSTLSYP----NAVATDGFV-------- 172

Query: 186 IPPAGASADSSNKSNGGSGGGF 202
                  A+ S +  GG GGG+
Sbjct: 187 ------GAEESREGGGGGGGGY 172

BLAST of CmaCh16G004950 vs. TAIR 10
Match: AT3G22160.1 (VQ motif-containing protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-16
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = 0

Query: 1   MSGPGDWLQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASANTGASTGLNPER-RVA 60
           M+ P +W QFY+ N   T     +  ST+       V+   A   T   + L+PE  RV 
Sbjct: 1   MANPNEWSQFYNNN--QTFFTTSTTASTA-------VTTTTAGDTTSIDSRLSPETGRVT 60

Query: 61  KPVRRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTP-PFAS-SISPNFSLGFGAIPQS 120
           KP RRRSR SRRTPTTLLNTDT+NFRAMVQQ+TGGP+   F S + +  FSL   + P +
Sbjct: 61  KPTRRRSRASRRTPTTLLNTDTSNFRAMVQQYTGGPSAMAFGSGNTTSAFSLTSSSDPSA 120

Query: 121 NSGLISPPSGYPLQFYHHNP 138
            S   +P   +   F  H P
Sbjct: 121 GSSQQAP---WQYNFQPHAP 128

BLAST of CmaCh16G004950 vs. TAIR 10
Match: AT4G39720.1 (VQ motif-containing protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.3e-10
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 8   LQFYHQNLPTTAAPPPSDQSTSEMIFVDRVSDAIASAN---TGASTGLNPERR--VAKPV 67
           L F H N    +  PP+  + +  + V++  D I+  +   + A++ L P     V K  
Sbjct: 57  LHFDHNN--NNSLIPPNYFNNNTFLPVNQQPDPISQLDLRTSSATSSLPPTNNIGVIKKT 116

Query: 68  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFASSIS 105
           ++RSR SRR PTT+L TDT+NFRAMVQ+FTG P PP  ++ S
Sbjct: 117 KKRSRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPLFNNNS 156

BLAST of CmaCh16G004950 vs. TAIR 10
Match: AT5G65170.1 (VQ motif-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 57/153 (37.25%), Postives = 71/153 (46.41%), Query Frame = 0

Query: 16  PTTAAPPPSDQSTSEMIFV-------------DRVSDAIASANTGASTGLNPERRVAKPV 75
           PT  + P     +SE +F                 +  I S  T    GL   R      
Sbjct: 84  PTDGSRPVPPPISSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGLATTRN----P 143

Query: 76  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA--SSISP--NFSLGFGAIPQSN 135
           ++RSR SRR PTT+L TDT+NFRAMVQ+FTG P+ PF   SS  P   F L FG+   S+
Sbjct: 144 KKRSRVSRRAPTTVLTTDTSNFRAMVQEFTGNPSTPFTGLSSSFPRSRFDL-FGSSSSSS 203

Query: 136 S--------GLISPPS---GY--PLQFYHHNPQ 139
           S         LISP +    Y  P   YHH+ Q
Sbjct: 204 SRPMKPFPHKLISPSTLNHHYLPPSSEYHHHHQ 231

BLAST of CmaCh16G004950 vs. TAIR 10
Match: AT1G35830.1 (VQ motif-containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-08
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 0

Query: 63  RRRSRTSRRTPTTLLNTDTTNFRAMVQQFTGGPTPPFA---SSISPNFSL---------- 122
           R+R+R SRR PTT+L TDT+NFRAMVQ+FTG P  PF+   SS +  F +          
Sbjct: 100 RKRTRASRRAPTTVLTTDTSNFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTY 159

Query: 123 -GFGAIPQSNSGLISPPSGYPLQFYHHNPQPFVIP 144
             F  IPQ     ++P +   L  +HH       P
Sbjct: 160 NPFRPIPQKP---LNPSTSSLLNLHHHTTTSMTFP 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LIE68.4e-1543.57VQ motif-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=VQ22 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15120.13.5e-1638.61VQ motif-containing protein [more]
AT3G22160.15.9e-1643.57VQ motif-containing protein [more]
AT4G39720.18.3e-1040.20VQ motif-containing protein [more]
AT5G65170.12.0e-0837.25VQ motif-containing protein [more]
AT1G35830.12.7e-0840.00VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 71..98
e-value: 2.3E-10
score: 39.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..74
NoneNo IPR availablePANTHERPTHR33179:SF29VQ MOTIF-CONTAINING PROTEINcoord: 1..194
IPR039609VQ motif-containing protein 15/22PANTHERPTHR33179VQ MOTIF-CONTAINING PROTEINcoord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G004950.1CmaCh16G004950.1mRNA