CmaCh16G004820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G004820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTify domain-containing protein
LocationCma_Chr16: 2447777 .. 2449052 (+)
RNA-Seq ExpressionCmaCh16G004820
SyntenyCmaCh16G004820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATCTTCCTTGTTATTATTCCCTTGTGATTTATGCATTACCCCCAAATTAGGCACCTTCTCTTCTTCTTGCCTAAATAAGCATCTTCCTCTCTCTCTCCCTCTCTCTCTTATATATAAAAGGTCTCATTGGAGTTCTAGAGCTAAAGGGATTGTGTATTGGAGGTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGTGAGAGAGAAGTTCTTGTTCTTGTTCTTGTTCATCATTTTCTTGTTTGTTTAAAACTTACATGGAAATTGGAATTTGGGTTTGTGTTTATGGATGTAGGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGTAATTGCTCATTCCCATCTACTTTCTTTTCATTGTAAAACTCATATGCTTACTTACCCTAACTCTTGTAATAGTGTAAAGGGTTTAGAAACTCTAAAAGGGATTCGAAGGCTTTTTCTAAAAGATGCCATTAAAAAAAAAAAAGTCATACCGAACTCACTTTAGAATCCGAGCATCTGTTAGTAATAGTTCAGTGGTCGAAGTCCACTTCGTGGCGTGCCTACATTCAAGAGATAGTGATCAGTGAAGATAATAGAGAGTTAATGAACAATGTTTATTTTGGGTACACAACATTGTAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAATAACCAAACCGCTTACCTGATTCAAGCGAAGTTTGAGCCTCCCAACATCATCAAACAATCCATCGATCAATCAATCAATCAAAAACTCTTCATTTGTACTCTTATTCTACTTACATTCTTGTATTGTTGAATGGAAATAAGCAAAAAAAGTACTACGAGAAAATAATTCGTTTCGAACGTGTAAATGAAAACACAATAGCCCCGAGTTACAGTGCAAAAGAAACATCTATCAGGACACGACCTGATTGAAACTAATCTCTGGAATGAGAATCTGCATCTTTTGTTCTGAAGCATTTGAC

mRNA sequence

TTTTATCTTCCTTGTTATTATTCCCTTGTGATTTATGCATTACCCCCAAATTAGGCACCTTCTCTTCTTCTTGCCTAAATAAGCATCTTCCTCTCTCTCTCCCTCTCTCTCTTATATATAAAAGGTCTCATTGGAGTTCTAGAGCTAAAGGGATTGTGTATTGGAGGTTGGCAAATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAATAACCAAACCGCTTACCTGATTCAAGCGAAGTTTGAGCCTCCCAACATCATCAAACAATCCATCGATCAATCAATCAATCAAAAACTCTTCATTTGTACTCTTATTCTACTTACATTCTTGTATTGTTGAATGGAAATAAGCAAAAAAAGTACTACGAGAAAATAATTCGTTTCGAACGTGTAAATGAAAACACAATAGCCCCGAGTTACAGTGCAAAAGAAACATCTATCAGGACACGACCTGATTGAAACTAATCTCTGGAATGAGAATCTGCATCTTTTGTTCTGAAGCATTTGAC

Coding sequence (CDS)

ATGGGAAGGGAGTTCAGTTTGGAGCTTGGGCTGTGGCCATCTTCTTCTGTTTCAGAGACAAACTTCCAATTCTCTGCAATTCCCTCCATGATGGCTATGCCATTTACTTTGAACCAACAGCAGCAGATCATGGTGTTCTATAATGGAACACTTTCCCTCTGTGACTTTACTGAGCTCCAGGCAAGAGCCATACTATGGGTAGCAAGCCGAGAGAGGAGTAGCAACTCGAGATGGACCAACCCAGAATGGTTGAGTCTGCTGCAAATGCCAAAGAGTGGGAGTGGGAATGGGAATGGGAATGGGAATGGGAATGCAGGTTTCCCCATTAAGAAATCTCTGCAGAGATTCCTACAAAGGAGAAAAGCAAGAAGAATTCGATCAATGTCTCCATATCACAAATTGTAA

Protein sequence

MGREFSLELGLWPSSSVSETNFQFSAIPSMMAMPFTLNQQQQIMVFYNGTLSLCDFTELQARAILWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARRIRSMSPYHKL
Homology
[Close]
BLAST of CmaCh16G004820 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 0 

Query: 7   LELGLWPSSSVSETNFQFSAIPSMMA-MPFTLNQQQQIMVFYNGTLSL-CDFTELQARAI 66
           LEL L+P+S  S+++   S + S  +  P    + Q+I +FYNG +    D T LQAR+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 67  LWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARR 126
           + +ASRE  + S     +       P + S + + N   N    +KKSLQ FLQ+RK  R
Sbjct: 69  ISIASREMKTKSSSNGSD-------PPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-R 128

Query: 127 IRSMSPYH 133
           I++ SPYH
Sbjct: 129 IQATSPYH 128

[Close]
BLAST of CmaCh16G004820 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 0 

Query: 7   LELGLWPSSSVSETNFQFSAIPSMMA-MPFTLNQQQQIMVFYNGTLSL-CDFTELQARAI 66
           LEL L+P+S  S+++   S + S  +  P    + Q+I +FYNG +    D T LQAR+I
Sbjct: 9   LELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQARSI 68

Query: 67  LWVASRERSSNSRWTNPEWLSLLQMPKSGSGNGNGNGNGNAGFPIKKSLQRFLQRRKARR 126
           + +ASRE  + S     +       P + S + + N   N    +KKSLQ FLQ+RK  R
Sbjct: 69  ISIASREMKTKSSSNGSD-------PPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKI-R 128

Query: 127 IRSMSPYH 133
           I++ SPYH
Sbjct: 129 IQATSPYH 128

The following BLAST results are available for this feature:
BLAST of CmaCh16G004820 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LBM22.9e-0837.50Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1[more]
BLAST of CmaCh16G004820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G30135.12.1e-0937.50jasmonate-zim-domain protein 8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425Jas_motifcoord: 110..131
e-value: 2.7E-6
score: 27.1
IPR010399Tify domainPFAMPF06200tifycoord: 39..69
e-value: 5.8E-5
score: 22.3
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 36..132
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5Bcoord: 36..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G004820.1CmaCh16G004820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031347 regulation of defense response
biological_process GO:2000022 regulation of jasmonic acid mediated signaling pathway
biological_process GO:0009611 response to wounding
cellular_component GO:0005634 nucleus