CmaCh16G004630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G004630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	Cma_Chr16: 2316505 .. 2324719 (+)
RNA-Seq Expression	CmaCh16G004630
Synteny	CmaCh16G004630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGAGGGAAGGCGCTAGAAGAAAGGGAGGGAAAATAACCAAAATAAGAAGACGAATAAGCCATGCGATTTCGCTGGTGGTGCTGCCGGCGGCGACACTCTGGTAGTAGAGGTACCGGACCATCGGCCTCTAATGCTCTGCACAAACTTAGCCAGGAAGAAGAAGGTCGTTAATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACCGAGTCAGAAGCGCCGGAACGGCCCCCCACTCGGTCTTAAAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGTCTCACTTATACCCCTCCCCTCGCCAATTTCTGCCTCCGGAACCAACACTCCTCTCTCTGTAAGTATTTTCTTCGTTTTTCTCTCTTCAATTTGATTCCGCTTTCAGCCCTAATTTATGTCTCTCTGTATGTGGTTCCTGCGTTTCGTTTTTCTGTTTCAGGTGATTCGGCTTCCTCCGACAACGAGCGAAAGCGCGAATGTCCATTTTGCATTTTGGAGAGGCGGATAGTGAGGTCTTTGAGTTTGGATCTCACCTTAGATTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGACGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGAAATGGCAACTACAACGGTGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGATTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAATAATAAGTACAAGTGTGACAAGTAAGCTTTTATTTTTTCCTGTGTATATCCATCTTCTTTCTCTTCTGGTTTTGGAGTTTTCTTTTGCTCGGGTCTGATTTGGTGAGACTGTGTTTGCTTCGTAGTTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCAATACTCCAACCACCTAATATTCTTGTCATCCAATTGAAGGTTCTCTGTCCTAACCTTTGATTTATTGTTTCTTTTCCCTGTTCAATTCACTGTTGTTTGTTCAAGTTCGTAGTGTTGCTGCTTTCATGTAAAGGCGTTGTTCTTGGATGGGTTTGGCAGAGATTTGATGGCATATTTGGGGGTAAGATTGACAAGGCTATTGCGTGTGACGAAAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGTCCGTGTCTAACAAAAAATGACGTTGCTGAAATGCTTATTTATTAAGATTGCTTGTATATTTGAGCCATGCATGTAAAAACATGTCCGTTAAACTAAATAAATATTATAAAGTACATAAACGTCTAAAATTTATTTGGAGTACGATTTTACTGTAAAATTTTATGGGACTTTCTACCTTAATCCGCTCTGAATGATGAATGATGATTGTCTGTATATTAAAGGTAGGATTTCTCTATAAGTTACTTGGAGGATTGGCAATGATCTTCTTTAACATCTGGGAGGGACCAAATACCAATTGTCTTTTCTTCTAGCTGATTGTAGGTTTCAGCAGAGTTCTAGAGTAAATGTTGTATAATGCGACTTTCAGTGTTTAATTCTGGATTTCTTCTTCAATCAATGAGCACTTATATCTGCCATTTTCTTAGCTTGCATGCTAAAATATGCTGGATTAGGAGTGCAGCTAAATCAAAAGTAAATCGACACATCTTAGTTATAATCTTATATGGATACTTTTTAGTTGACTAGTATTTTATTTGAAAGTTTTGCTTATGCTAGACATCATTTCTTTAGTTTGGATCGCAAAGCCACAAGTCAGTTTGCCCTCAATGCAATCAGTGACTTCAAAATGGTTATCTGTTCGTGGGTGATTAGTTTAAATGTTGTAGTTCTCTCTAACAAAGTAATTTACTCAGAAAATGGTCAAAAAGATACATTTGACTTACAAGCAAGTGAAACAAAGGTTACATCGTGACTCTAGCGTATCTTTACAATGCCATTTGGAATTGATCTTGCATGAGAAATCCCACATACTGTGATGGCCCTTTCATTTCTGATAGGTAGGTCACATTCAGACTAAATATCCCCGTTTCTTTCTAGGTTGAGTCCAACAAAAATGGGAGTTGGGTGGAATACAAGATTCTGGGAATATCATTTGGATGGCAATCTTGCCGTTATAGAGCTTATGTGCAATCTAGTCTCTATTGAGCGTTCATTCAAAAAATGTTGATGTATTAAATTGCTGGAGTGAATCACAAGCAGAGTGGGACTTAGATTTTAGAAGAGCTCATCGTCAATTAAATTTTGATTTAATCAAAGTTTAAAAAATGATTTCTTGGAGTAGGTTATTGAAGATGCAATGGCTCTAGTTGAGACAGTTTAGGGGAATGGATTAAAGGGGGTGGAACTTGCTTCCATTTTTATGTTCCATTGTGTGCGGTGGTGGGGGAGAATTTAGTAAATAGTTATTTTCTCGTTTGCCCATTTCAAGATCAGTGTTTCTAGTGAATGTCTCAAAGGTCATTTGGAAGCAAAAGACTCTAGGAAAGGTTATCCTTTTCTTATGGAACCCTGTTCCATGAGGTTATTAAGGGGGGTTGTATGATCCAAAACCGCACTGTAGGTGTTGACATATTTTTAACTAAGTGCTGATGCAGACATGAATATGTATACGATATGATACGACGATATGTCAATTTCTAAAAAAGTAGGACATGGACATATTGGGATACTATTTTTTTAATAATAAATGTTTATATATTTAGTACTTCTAGACAAAACATGTAAATATGGCATTTAAATCGAGTTTTGCTTCACTACAAAAACATAATGTCAAGCGAGTTGACAATAATACAAAATGCATTATTGAAACAAATTTTTTTATACAAATTAGAGGATAGTAAATACAAAAGGAAATGAAAAATAGTTACGTATTGTCAAAGCACTTTTGATTCATCCACTAGAGATTGAAGATATGGAAGGATTTGATTGGCAATGGCTAGAGGAAGAAGACATCCTGATAGCTCACTTCAATGTTCTTGTTAGACACTTGAACATGTATGTGTATGTGTGTATGTATGTACATACGTACATACGTGAAAAAAAAAAAATCTTCTAAAGCATTCTTCTTCATCTAGCCTTAGCTTCTTTGTACAACTGTCTTCTTATTGGAATGCACACCATAAGCCTCTTTGTACAACTGTCTTCTATTGTGATGTCCTTAATTTTTTGGTCCATAGCTCTTTTGTAGGCTTCATTTATGCTATTGGCTGTAACTTCCATTTAGTCCTTTTATGGGGTGGTTTTTACAATTTTCTTTTGTGATATTTTATTGAAGTTGATTTCTTAAATCATGTTGCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCCGCAGAATCTGGACATTATTATGCATACATCAAGGTAATTGTTGTTGGCGATACTCATCTGAAGCCTACTAAATATATAACAATATCTGATCCTCACGAATTTTTCTGTATTTTCTTAGCAGGATGCATCAGGTAGATGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACGAATCAAAGGCCAGTAACTACTAGCACAGATCTTGCTTCCAATGGTGTAAAATCTCATCAATGTCATGGCAGTGATGGATTCAAAATGTCGAAACCTTCTGTTGTAACTAAAATGGCACTGACAAGATCCCATGTTGAGCAATCTTCTTGGAAGGAACTTTCAAGTTCATTTAAGGTAGATAAACCAACTTCCAGTCCGCAAGGAAAGTCGTATATGAATGGACATTCTAATTCCATGCAAGCTCCTTCCACCATTAATGGAAAGATTGTTCTTGAGAAGGATGAATCCATCAAGGAGAATGAGAAAGAGAATATAAACTCGTTGCCTCTGGAAAATGGTGCTAGACATATATCTTTGCTAGGGAATGGAAATATCAGGGAAAATCATGAAGTTCATTGTGATGTCCCTGAGAAGGAACATAAATCTGTGTTAATGAATGGTAATGTAAATGGTGAGAGTATGGGAATGAAATCAGATAAACATGACCAGTATTATGGTAAATCTATGAATATCAAGATCACTGCAGGAAGAGGGTCTGATCATGATGAAATTGATAATACAGTCAACTGCCCCTCTGAAATCAAAAGGGCCAAAAGAAGATCAGACTTATGTATCTTGTCTCAACAGGATTCTCAATCTCGGGGAAGAGTTGAAGAACTTAAACAAAAGTACGTTAATTTCCTTGAAAATATTTCTCCGTTGAATTCAATGAAGTATTGTAGTTTCATTTTATGATCTTTGGAAGATTAAGGTGAAAGGAAATTTTCTTCTGTTCTGACTATATTTCTCTTGTTGACCTACACACACAATAAGGTCGCCAAAGCTGTTAGTCTTAATTGTTAAGGTTTAGATTCATTTAATTATTATAGACCACTTAAAACAAGTTATGCATGTGATGCAGGGTTGGTACGTATTATTTTCTGTATGACAGTTTGTGCAATTACTTTTTCTTTTGTGCATTTCCTTTTAGCTGTATTAACTATTGCATGCCTTTTCTTTTTCTGTTTTTGTTTGGCACTACTCTTACTGTGTTTGGATTGGCTTCCTAAGTGATTTGGAGGGCCAGAAGTGTTTTTTTTTCTTAAATCTAGAGTGTTGGATAATAAATAAAAATTATTTTTGAAATAATCAAATTAGTTCACAATTTTCTTGAAGCACTTAAAGTTGATTATATAAAAAGTTATTGATTGGAAATCACTCTAGAATCACTTTATGGTAATAAAACATTATAACTACACAACTTTTGATTAAAATTACTTTTAAGAAATGTAACAGAACATACCAGGATTCGAATTAAAACCAATTTTATGTAACATGTTTTAAAAATGATTGTCTTAGAAATAAGTGTTTAAATTAGGTATGCCAAACTCACACTTACCTGTTGTATTATCTGACTATAAGGCTACTGATATCCCTCTGTAGTTTATTTCTTTTATGCTTTACTTCTATCAAGTTGTTTTGGTCTCTGATACATTTTTGTGTCTATATTCAGTCTCAAGAATGAAACTTCCTCAGTTTTAAGATCATGCGGTTGGTCAGAGGAGGTCTTCAGTTGCATGCGAACAAGGAAGAGATTATGTTTACGAGAAACTGGCAGGACACCAAGTAGGAATGACTTAAAGTACGTATTACTTTCTAAGTGTACAAACAACTTCATATTCTAGTCAACTGGGTTGCTTGATGAATTATTATTTGAAATCAACATTCCTTTTCTGAAGAAAGCTCGTCATTGGTTTTGGCTGACCTATTCTATTATGAAACTTGTGATATGTACTAACAGGTTGTAAATTTCCCAAACCTGGATTGTCAAATCCTTCTTGATAAGCTGTATCAGTGTTTGTAAATTTAGAAATTTTACAAGGGAACTATTTTTATTTGTAATGGTATTATAATTGGCATGAAGAACTCTACCTGTGTATGTAGTAATCTAAGAAGCAAGCACGATTACTTCAACTTGGGGAACATGTCAGTGTCTAACACTTGTCAGACGCGTGTTGGACACTTATTAATCCCAATAGAGATTTGGGCACTGATTAAACAAATTGAATACGAGTTCAATTCTTGTTGGGCATGTTTTGAACACTTGTTAAACACAATGAACACATATCAAACACTTGTGAACATTTGAGGTACACAGAAATGCATAAGCCAGTATTGATTTTGAATTGTCTTTTCATTAAGATGTTAAATCATTTAGAAAAAGTGATTCAGTGGTCTGGATCTATCTGGAATAGTTTGATAGAGAACAATGGATCACATGCATAAGCATGCTAAATTAAAACGATTTTTTAGTTTGAGAATTATTGGAATATTTATTAAGAAATAAGGCCTTACCACATTCTATAATTTTAGAATTTTACATGCCACAAGTCTGTCATTTCACGTTCGTGTTTGTGCTTCTAGGAAGTTGTAATAATGTTTTACATTTGAAGTTAACGGTAGCTTTTTGGTTATGCTGTTATTAGGTTTTTTTTTCTCTGTTCATGGTTCTTTTTCCAGTGTATGTGGGTCGAACTCATTCGTTTATCATTAATGCATTGGTCATAATCAAACTCCAGTTAATTGAGATTTTATTCATTTTTTTATTTTAGTGGATGGCTGCTTTCCTTGTTGTGTAACTATGTAGATTTTGTATTGGTATTTTATTGAATATGAGTTCGTTGCTCGGTTCTGTTCTTATTTTATCGACTATTTTGTTTTATACACGTGATATGTTTAGGACTTGCTTTCATATTTTAATTGCAATATGTTCCAATCTTCATCTGGGAATATATTTTATTTCAAAATTTTAATTCATAATTTCGTTTAGTTTTAAATTGTTTACCTTGCAGTTAACTACCTTTTTCTATAATTGAGCTGAATATTTTTTGGATTGCAGTCCTATAGATATAGTCTATAAATGTATGTTCAATTTTTATTGTCACCAAAAGAAAAGATATATTGTCAATTTTTTCTTATTTCAACTATGCCGTTCATTAACGATGTCACAATGCCGGTAAACAATTCTTGTTTCAAGTGGTGATGCTAAGGTTCTCTGTATCTGGATGCCCATGTGGTGCATTCCCATTTTTCGTTCCTTTTTCTAACGGAGAATTATGACTTTGTAGTTGGAGATATCTCCGGAAGATTGAATCGTGCCTTCTTTTTCCCATCTTTTGAGGTCTCTTAATTCCATTTGCCTGGGTTGGTGGAGTTCTTTTTGATTGCTTTTATTAGTTGATTTAGGGTTGGCTGGTTGGGTATAGGATGTTAAAATATTTGACGTAAATACTTGCTTTGCTTGAACTATCTAATAAATAATCACCATCATTGCTTGGTTGGGGCATACACATTTTATTTTTAGCATTATTTTCTGGCTTACGCCCCTCCTCTCCTCTACTTGACTTGGTATTTTGGGTACAATACAATAGTTAGAACTTCAAATCAATCTTCTTAGTGGTTTTATTATTTTCGCGTTTACCCCCGTCATAAGCATGCATGCAGTTCACTCACTATGGAGTTTTCCTTAATTCCCCGTCTTAATATATTGTAACTTGTGGACTCACATGCAATGCAGGATATTGCTGATTGCGGATGCCAGAAAGAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAGGACCTTATCAAAAAACTTAAACTGTTTAGCCATGAAAAGTAACCTCGGTGGGTCTCCTCTTTTTATGCGGTAGCTGTGCTGAGAAGAAACCTTATCCTGGTTCTTGAGATGGCATCACAATCTTTAGAACAAAATTCATTCTGTTTCGATGGGAATGGAATGTCTTGATGGTGATATATGAAGAATATGTCCAATGCTTTGTTCAAGCAAGCATTGGCGCCTTCGGGAATTTGTCCTTCATCATTCTGAATCCGCTGCAGTGGATTTCCATTTCTTTTGAAAAGTTCTGATCGCTGATGCGCACGCATGAAATTTCTTTATATCTCGAAGCTGCACAACTGGCGGCAGTCATTGCCGAGAAGAAAGTTCAGGAATTCTATTCGATTTGTATAATATCCTTTTTGGTAGGATTTTTGGCTTTCAGTCATTATGTCGTGGATGCATTACGAAGTTTCTTTCAAGGAATACAGGAAAACTGCGGGAGCGAAACATATCTATGCTTTCATTGAGTTTGCATTTTTACCAAGCAAGTGTTTGCTTTTGAGCTATCTATTACACCGTACATTTGATCTTGTACTTGACTCTGCGATAAAATGATATGGTAGGCTCTTATTGCAGCCTACAGTTGGAAATATTTCAGGTGACACTGCTTTCAAAGGGTTCGATCGTATTTGATTTAGTTCACTGTCATGTATCTCTTTTGGTTTCTTTAAAGCTTTTCAGTTTTACTTCTTACTTTGCACTATGTACAATTTAGAGTTTTATGGCTGATTGATATTATTTGGCAAAAACTAACTTTCAGTTATTTTTTTTTTTTGTAGTATCTGGAATGACTTCCGGATG

mRNA sequence

GGGGGAGGGAAGGCGCTAGAAGAAAGGGAGGGAAAATAACCAAAATAAGAAGACGAATAAGCCATGCGATTTCGCTGGTGGTGCTGCCGGCGGCGACACTCTGGTAGTAGAGGTACCGGACCATCGGCCTCTAATGCTCTGCACAAACTTAGCCAGGAAGAAGAAGGTCGTTAATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACCGAGTCAGAAGCGCCGGAACGGCCCCCCACTCGGTCTTAAAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGTCTCACTTATACCCCTCCCCTCGCCAATTTCTGCCTCCGGAACCAACACTCCTCTCTCTGTGATTCGGCTTCCTCCGACAACGAGCGAAAGCGCGAATGTCCATTTTGCATTTTGGAGAGGCGGATAGTGAGGTCTTTGAGTTTGGATCTCACCTTAGATTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGACGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGAAATGGCAACTACAACGGTGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGATTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAATAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCAATACTCCAACCACCTAATATTCTTGTCATCCAATTGAAGAGATTTGATGGCATATTTGGGGGTAAGATTGACAAGGCTATTGCGTGTGACGAAAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCCGCAGAATCTGGACATTATTATGCATACATCAAGGATGCATCAGGTAGATGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACGAATCAAAGGCCAGTAACTACTAGCACAGATCTTGCTTCCAATGGTGTAAAATCTCATCAATGTCATGGCAGTGATGGATTCAAAATGTCGAAACCTTCTGTTGTAACTAAAATGGCACTGACAAGATCCCATGTTGAGCAATCTTCTTGGAAGGAACTTTCAAGTTCATTTAAGGTAGATAAACCAACTTCCAGTCCGCAAGGAAAGTCGTATATGAATGGACATTCTAATTCCATGCAAGCTCCTTCCACCATTAATGGAAAGATTGTTCTTGAGAAGGATGAATCCATCAAGGAGAATGAGAAAGAGAATATAAACTCGTTGCCTCTGGAAAATGGTGCTAGACATATATCTTTGCTAGGGAATGGAAATATCAGGGAAAATCATGAAGTTCATTGTGATGTCCCTGAGAAGGAACATAAATCTGTGTTAATGAATGGTAATGTAAATGGTGAGAGTATGGGAATGAAATCAGATAAACATGACCAGTATTATGGTAAATCTATGAATATCAAGATCACTGCAGGAAGAGGGTCTGATCATGATGAAATTGATAATACAGTCAACTGCCCCTCTGAAATCAAAAGGGCCAAAAGAAGATCAGACTTATGTATCTTGTCTCAACAGGATTCTCAATCTCGGGGAAGAGTTGAAGAACTTAAACAAAATCTCAAGAATGAAACTTCCTCAGTTTTAAGATCATGCGGTTGGTCAGAGGAGGTCTTCAGTTGCATGCGAACAAGGAAGAGATTATGTTTACGAGAAACTGGCAGGACACCAAGTAGGAATGACTTAAAGATATTGCTGATTGCGGATGCCAGAAAGAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAGGACCTTATCAAAAAACTTAAACTGTTTAGCCATGAAAAGTAACCTCGGTGGGTCTCCTCTTTTTATGCGGTAGCTGTGCTGAGAAGAAACCTTATCCTGGTTCTTGAGATGGCATCACAATCTTTAGAACAAAATTCATTCTGTTTCGATGGGAATGGAATGTCTTGATGGTGATATATGAAGAATATGTCCAATGCTTTGTTCAAGCAAGCATTGGCGCCTTCGGGAATTTGTCCTTCATCATTCTGAATCCGCTGCAGTGGATTTCCATTTCTTTTGAAAAGTTCTGATCGCTGATGCGCACGCATGAAATTTCTTTATATCTCGAAGCTGCACAACTGGCGGCAGTCATTGCCGAGAAGAAAGTTCAGGAATTCTATTCGATTTGTATAATATCCTTTTTGGTAGGATTTTTGGCTTTCAGTCATTATGTCGTGGATGCATTACGAAGTTTCTTTCAAGGAATACAGGAAAACTGCGGGAGCGAAACATATCTATGCTTTCATTGAGTTTGCATTTTTACCAAGCAAGTGTTTGCTTTTGAGCTATCTATTACACCGTACATTTGATCTTGTACTTGACTCTGCGATAAAATGATATGGTAGGCTCTTATTGCAGCCTACAGTTGGAAATATTTCAGTATCTGGAATGACTTCCGGATG

Coding sequence (CDS)

ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACCGAGTCAGAAGCGCCGGAACGGCCCCCCACTCGGTCTTAAAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGTCTCACTTATACCCCTCCCCTCGCCAATTTCTGCCTCCGGAACCAACACTCCTCTCTCTGTGATTCGGCTTCCTCCGACAACGAGCGAAAGCGCGAATGTCCATTTTGCATTTTGGAGAGGCGGATAGTGAGGTCTTTGAGTTTGGATCTCACCTTAGATTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGACGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGAAATGGCAACTACAACGGTGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGATTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAATAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCAATACTCCAACCACCTAATATTCTTGTCATCCAATTGAAGAGATTTGATGGCATATTTGGGGGTAAGATTGACAAGGCTATTGCGTGTGACGAAAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCCGCAGAATCTGGACATTATTATGCATACATCAAGGATGCATCAGGTAGATGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACGAATCAAAGGCCAGTAACTACTAGCACAGATCTTGCTTCCAATGGTGTAAAATCTCATCAATGTCATGGCAGTGATGGATTCAAAATGTCGAAACCTTCTGTTGTAACTAAAATGGCACTGACAAGATCCCATGTTGAGCAATCTTCTTGGAAGGAACTTTCAAGTTCATTTAAGGTAGATAAACCAACTTCCAGTCCGCAAGGAAAGTCGTATATGAATGGACATTCTAATTCCATGCAAGCTCCTTCCACCATTAATGGAAAGATTGTTCTTGAGAAGGATGAATCCATCAAGGAGAATGAGAAAGAGAATATAAACTCGTTGCCTCTGGAAAATGGTGCTAGACATATATCTTTGCTAGGGAATGGAAATATCAGGGAAAATCATGAAGTTCATTGTGATGTCCCTGAGAAGGAACATAAATCTGTGTTAATGAATGGTAATGTAAATGGTGAGAGTATGGGAATGAAATCAGATAAACATGACCAGTATTATGGTAAATCTATGAATATCAAGATCACTGCAGGAAGAGGGTCTGATCATGATGAAATTGATAATACAGTCAACTGCCCCTCTGAAATCAAAAGGGCCAAAAGAAGATCAGACTTATGTATCTTGTCTCAACAGGATTCTCAATCTCGGGGAAGAGTTGAAGAACTTAAACAAAATCTCAAGAATGAAACTTCCTCAGTTTTAAGATCATGCGGTTGGTCAGAGGAGGTCTTCAGTTGCATGCGAACAAGGAAGAGATTATGTTTACGAGAAACTGGCAGGACACCAAGTAGGAATGACTTAAAGATATTGCTGATTGCGGATGCCAGAAAGAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAGGACCTTATCAAAAAACTTAAACTGTTTAGCCATGAAAAGTAA

Protein sequence

MALQLQMSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGSDGFKMSKPSVVTKMALTRSHVEQSSWKELSSSFKVDKPTSSPQGKSYMNGHSNSMQAPSTINGKIVLEKDESIKENEKENINSLPLENGARHISLLGNGNIRENHEVHCDVPEKEHKSVLMNGNVNGESMGMKSDKHDQYYGKSMNIKITAGRGSDHDEIDNTVNCPSEIKRAKRRSDLCILSQQDSQSRGRVEELKQNLKNETSSVLRSCGWSEEVFSCMRTRKRLCLRETGRTPSRNDLKILLIADARKKFISRIPEPLKEDLIKKLKLFSHEK

Homology

[Close]

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot
Match: Q9FPS2 (Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=UBP25 PE=2 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 1.4e-180
Identity = 362/685 (52.85%), Postives = 453/685 (66.13%), Query Frame = 0


Query: 1   MALQLQMSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSL 60
           M  +LQMSW PSL SQKRRNGPPLGL+NLGNTCYLNSVLQCLT+TPPLANFCL ++HSS 
Sbjct: 1   MGFKLQMSWMPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSH 60

Query: 61  CDSASSDNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHE 120
           CD+   D ERKR+CPFCI+E+RI RSLS+DLT D+P KI +CL+IFAEHF+LGRQEDAHE
Sbjct: 61  CDT-YVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHE 120

Query: 121 FLRYVIDACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDS 180
           FLRYVIDACHNT LRLKKLR NGN  +NG      ++VVKEIFGGALQSQVKCLSCG +S
Sbjct: 121 FLRYVIDACHNTSLRLKKLRYNGNEPFNG------NSVVKEIFGGALQSQVKCLSCGAES 180

Query: 181 NKIDEIMDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPN 240
           NK DEIMDISL++L SSS+KE+LQKFFQ E+LDGNNKY+C++C+KLV ARKQMSILQ PN
Sbjct: 181 NKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPN 240

Query: 241 ILVIQLKRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESG 300
           ILVIQLKRF GIFGGKIDKAI+  E L LSNFM K S+DP+PEYKLFG IVHSGFS ESG
Sbjct: 241 ILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESG 300

Query: 301 HYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKS 360
           HYYAY+KD+ GRWYCCNDSFV++STLQEVLSEK YILFFSR+NQRP +  T + SNG  S
Sbjct: 301 HYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKTLVTSNGTTS 360

Query: 361 HQCHGSD------------GFKM---------------SKPSVVTKMALTRSHVEQSSWK 420
           H+ +G +            GF M               SKP    K    +   EQ+  +
Sbjct: 361 HEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKPH---KFIRPKPRAEQAPLE 420

Query: 421 ELSSSFKVDKPTSSPQGKSYMNGHSNSMQAPSTINGKIVLEKDESI--KENEKENINSLP 480
           +   S KV+K    P  K  ++ +  + +  S +NG++   +DE+I  K N++ +++ LP
Sbjct: 421 DNLLSSKVEKAPLRPHAKVSISVNLGAKRV-SPVNGRLSFHQDENIAPKANKENSVSVLP 480

Query: 481 ------------LENGARHISLLGNGNIRENHEVHCDVPEKEHKSVLMNGNVNGESMGMK 540
                        ENG   +   G+     NH+V     E+       NG+ NG     K
Sbjct: 481 TKVNSGTERKFGTENGGNGVKENGSAPGSSNHKVALHPHERS------NGSSNGGD-HHK 540

Query: 541 SDKHDQYYGKSMNIKITAGRGSDHDEIDNTVNCPSEIKR--AKRRSDLCILSQQDSQSRG 600
            + H      S N       G+ H E +      ++ K   +  + D CIL ++D  SR 
Sbjct: 541 DNLHPCGSNGSQN-------GTAHPETERNGVSTTQSKGLCSSTKEDPCILLRKDESSRN 600

Query: 601 RVEELKQNLKNETSSVLRSCGWSEEVFSCMRTRKRLCLRETGRTPSRNDLKILLIADARK 643
            +E +K++LK +  S LRSCGW ++V   M  +KRL   ++G     +DLK  LI D + 
Sbjct: 601 ELEAIKESLKKDALSHLRSCGWYDKVLISMHAKKRLRTEQSGGEDG-SDLKRRLIEDVKS 659

[Close]

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot
Match: E1B9W9 (Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus OX=9913 GN=USP42 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-68
Identity = 159/461 (34.49%), Postives = 243/461 (52.71%), Query Frame = 0


Query: 25  GLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERRIV 84
           GL+NLGNTC+ N+ LQCLTYTPPLAN+ L ++HS  C +          C  C ++  I 
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGF-------CMMCTMQAHIT 171

Query: 85  RSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGN 144
           ++LS    +  P+ + N +R  A HFR G QEDAHEFL+Y +DA    CL         N
Sbjct: 172 QALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACL---------N 231

Query: 145 GNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHSSSLKEALQ 204
           G+      + ++T+V +IFGG L+S+VKCL+C   S+  D  +DI+L++  + S+ +AL+
Sbjct: 232 GSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALE 291

Query: 205 KFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAIACD 264
           +F + E LDG N YKC  CKK+V A K+ +I +  N+L + LKRF    GGKI K +   
Sbjct: 292 QFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYP 351

Query: 265 ESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVS 324
           E L +  +M + + +P   Y L+  +VH+GF+  +GHY+ YIK ++G WY  NDS V+ S
Sbjct: 352 EYLDIRPYMSQPNGEP-IIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTS 411

Query: 325 TLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGSDGFKMSKPSVVTKMALTR 384
            ++ VLS++ Y+LF+ R        S D+ + G  +H  H S G    +P +  ++  ++
Sbjct: 412 DIRSVLSQQAYVLFYIR--------SHDVKNGGELTHSAH-SPGQSSPRPVISQRVVNSK 471

Query: 385 SHVEQSSWKELSSSFKVD---------------KPTSSPQGKSYMNGHSNSMQAPSTING 444
                    +L S    +                P S P G S ++       +PS  N 
Sbjct: 472 QAASGFIGPQLPSHMMKNPPHLNGTGPLKETPSSPMSGPSGNSSVSRTGPVSASPSVQNW 531

Query: 445 KIVLEKDESIKENEKEN------INSLPLENGARHISLLGN 465
            +   +   I E+ K+        N LP+  G    +L  N
Sbjct: 532 SV--NRPSVIPEHPKKQKITISIHNKLPVRQGQSQSNLHSN 544

[Close]

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot
Match: B2RQC2 (Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus OX=10090 GN=Usp42 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-68
Identity = 162/463 (34.99%), Postives = 252/463 (54.43%), Query Frame = 0


Query: 7   MSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASS 66
           + WQ     Q  R G   GL+NLGNTC+ N+ LQCLTYTPPLAN+ L ++HS  C +   
Sbjct: 100 LKWQ-----QSHRVG--AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGF 159

Query: 67  DNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVI 126
                  C  C ++  I ++LS    +  P+ + N +R  A HFR G QEDAHEFL+Y +
Sbjct: 160 -------CMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTV 219

Query: 127 DACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEI 186
           DA    CL         NG+      + ++T+V +IFGG L+S+VKCL+C   S+  D  
Sbjct: 220 DAMQKACL---------NGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPY 279

Query: 187 MDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQL 246
           +DI+L++  + S+ +AL++F + E LDG N YKC  CKK+V A K+ +I +  N+L I L
Sbjct: 280 LDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISL 339

Query: 247 KRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYI 306
           KRF    GGKI K +   E L +  +M + + +P   Y L+  +VH+GF+  +GHY+ YI
Sbjct: 340 KRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEP-IIYVLYAVLVHTGFNCHAGHYFCYI 399

Query: 307 KDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGS 366
           K ++G WY  NDS V+ S ++ VL+++ Y+LF+ R        S D+ + G  +H  H S
Sbjct: 400 KASNGLWYQMNDSIVSTSDIRAVLNQQAYVLFYIR--------SHDVKNGGESAHPAH-S 459

Query: 367 DGFKMSKPSVVTKMALTR------------SHVEQSSWKELSSSFKVDKPT---SSPQGK 426
            G    +P V  ++   +            SHV +++     ++   D P+   SSP G 
Sbjct: 460 PGQSSPRPGVSQRVVNNKQVAPGFIGPQLPSHVMKNTPHLNGTTPVKDTPSSSVSSPNGN 519

Query: 427 SYMNGHSNSMQAPSTINGKIVLEKDESIKENEKENINSLPLEN 455
           + +N  S +  + S  N  +   +   I ++ K+   ++ + N
Sbjct: 520 TSVNRASPATASTSVQNWSVT--RPSVIPDHPKKQKITISIHN 527

[Close]

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot
Match: D3ZU96 (Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus OX=10116 GN=Usp42 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-68
Identity = 164/475 (34.53%), Postives = 255/475 (53.68%), Query Frame = 0


Query: 7   MSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASS 66
           + WQ     Q  R G   GL+NLGNTC+ N+ LQCLTYTPPLAN+ L ++HS  C +   
Sbjct: 100 LKWQ-----QSHRVG--AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGF 159

Query: 67  DNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVI 126
                  C  C ++  I ++LS    +  P+ + N +R  A HFR G QEDAHEFL+Y +
Sbjct: 160 -------CMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTV 219

Query: 127 DACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEI 186
           DA    CL         NG+      + ++T+V +IFGG L+S+VKCL+C   S+  D  
Sbjct: 220 DAMQKACL---------NGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPY 279

Query: 187 MDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQL 246
           +DI+L++  + S+ +AL++F + E LDG N YKC  CKK+V A K+ +I +  N+L I L
Sbjct: 280 LDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISL 339

Query: 247 KRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYI 306
           KRF    GGKI K +   E L +  +M + + +P   Y L+  +VH+GF+  +GHY+ YI
Sbjct: 340 KRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEP-IIYVLYAVLVHTGFNCHAGHYFCYI 399

Query: 307 KDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGS 366
           K ++G WY  NDS V+ S ++ VL+++ Y+LF+ R        S D+ + G  +H  H S
Sbjct: 400 KASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFYIR--------SHDVKNGGETTHPAH-S 459

Query: 367 DGFKMSKPSVVTKMALTRS------------HVEQSSWKELSSSFKVDKPT---SSPQGK 426
            G    +P +  ++  ++             HV +++     ++   D P+   SSP G 
Sbjct: 460 PGQSSPRPGISQRVVNSKQAAPGFIGPQLPPHVMKNTPHLNGTTPVKDTPSSSVSSPNGN 519

Query: 427 SYMNGHSNSMQAPSTINGKIVLEKDESIKENEKEN------INSLPLENGARHIS 461
           + +N  S +  + S  N  +   +   I E+ K+        N LP+  G   ++
Sbjct: 520 TSVNRASPATASTSVQNWSV--NRPSVIPEHPKKQKITISIHNKLPVRQGQAQLN 539

[Close]

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot
Match: Q9H9J4 (Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens OX=9606 GN=USP42 PE=1 SV=3)

HSP 1 Score: 260.8 bits (665), Expect = 4.2e-68
Identity = 156/445 (35.06%), Postives = 239/445 (53.71%), Query Frame = 0


Query: 25  GLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERRIV 84
           GL+NLGNTC+ N+ LQCLTYTPPLAN+ L ++HS  C +          C  C ++  I 
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGF-------CMMCTMQAHIT 171

Query: 85  RSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGN 144
           ++LS    +  P+ + N +R  A HFR G QEDAHEFL+Y +DA    CL         N
Sbjct: 172 QALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACL---------N 231

Query: 145 GNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHSSSLKEALQ 204
           G+      + ++T+V +IFGG L+S+VKCL+C   S+  D  +DI+L++  + S+ +AL+
Sbjct: 232 GSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALE 291

Query: 205 KFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAIACD 264
           +F + E LDG N YKC  CKK+V A K+ +I +  N+L + LKRF    GGKI K +   
Sbjct: 292 QFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYP 351

Query: 265 ESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVS 324
           E L +  +M + + +P   Y L+  +VH+GF+  +GHY+ YIK ++G WY  NDS V+ S
Sbjct: 352 EYLDIRPYMSQPNGEP-IVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTS 411

Query: 325 TLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGSDGFKMSKPSVVTKMALTR 384
            ++ VLS++ Y+LF+ R        S D+ + G  +H  H S G    +P +  ++   +
Sbjct: 412 DIRSVLSQQAYVLFYIR--------SHDVKNGGELTHPTH-SPGQSSPRPVISQRVVTNK 471

Query: 385 SHVEQSSWKELSSSFKVDKP---------------TSSPQGKSYMNGHSNSMQAPSTING 444
                    +L S    + P                SSP G S +N  S    + S  N 
Sbjct: 472 QAAPGFIGPQLPSHMIKNPPHLNGTGPLKDTPSSSMSSPNGNSSVNRASPVNASASVQNW 528

Query: 445 KIVLEKDESIKENEKENINSLPLEN 455
            +   +   I E+ K+   ++ + N
Sbjct: 532 SV--NRSSVIPEHPKKQKITISIHN 528

[Close]

BLAST of CmaCh16G004630 vs. TAIR 10
Match: AT3G14400.1 (ubiquitin-specific protease 25 )

HSP 1 Score: 634.4 bits (1635), Expect = 9.8e-182
Identity = 362/685 (52.85%), Postives = 453/685 (66.13%), Query Frame = 0


Query: 1   MALQLQMSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSL 60
           M  +LQMSW PSL SQKRRNGPPLGL+NLGNTCYLNSVLQCLT+TPPLANFCL ++HSS 
Sbjct: 1   MGFKLQMSWMPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSH 60

Query: 61  CDSASSDNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHE 120
           CD+   D ERKR+CPFCI+E+RI RSLS+DLT D+P KI +CL+IFAEHF+LGRQEDAHE
Sbjct: 61  CDT-YVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHE 120

Query: 121 FLRYVIDACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDS 180
           FLRYVIDACHNT LRLKKLR NGN  +NG      ++VVKEIFGGALQSQVKCLSCG +S
Sbjct: 121 FLRYVIDACHNTSLRLKKLRYNGNEPFNG------NSVVKEIFGGALQSQVKCLSCGAES 180

Query: 181 NKIDEIMDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPN 240
           NK DEIMDISL++L SSS+KE+LQKFFQ E+LDGNNKY+C++C+KLV ARKQMSILQ PN
Sbjct: 181 NKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPN 240

Query: 241 ILVIQLKRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESG 300
           ILVIQLKRF GIFGGKIDKAI+  E L LSNFM K S+DP+PEYKLFG IVHSGFS ESG
Sbjct: 241 ILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESG 300

Query: 301 HYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKS 360
           HYYAY+KD+ GRWYCCNDSFV++STLQEVLSEK YILFFSR+NQRP +  T + SNG  S
Sbjct: 301 HYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKTLVTSNGTTS 360

Query: 361 HQCHGSD------------GFKM---------------SKPSVVTKMALTRSHVEQSSWK 420
           H+ +G +            GF M               SKP    K    +   EQ+  +
Sbjct: 361 HEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKPH---KFIRPKPRAEQAPLE 420

Query: 421 ELSSSFKVDKPTSSPQGKSYMNGHSNSMQAPSTINGKIVLEKDESI--KENEKENINSLP 480
           +   S KV+K    P  K  ++ +  + +  S +NG++   +DE+I  K N++ +++ LP
Sbjct: 421 DNLLSSKVEKAPLRPHAKVSISVNLGAKRV-SPVNGRLSFHQDENIAPKANKENSVSVLP 480

Query: 481 ------------LENGARHISLLGNGNIRENHEVHCDVPEKEHKSVLMNGNVNGESMGMK 540
                        ENG   +   G+     NH+V     E+       NG+ NG     K
Sbjct: 481 TKVNSGTERKFGTENGGNGVKENGSAPGSSNHKVALHPHERS------NGSSNGGD-HHK 540

Query: 541 SDKHDQYYGKSMNIKITAGRGSDHDEIDNTVNCPSEIKR--AKRRSDLCILSQQDSQSRG 600
            + H      S N       G+ H E +      ++ K   +  + D CIL ++D  SR 
Sbjct: 541 DNLHPCGSNGSQN-------GTAHPETERNGVSTTQSKGLCSSTKEDPCILLRKDESSRN 600

Query: 601 RVEELKQNLKNETSSVLRSCGWSEEVFSCMRTRKRLCLRETGRTPSRNDLKILLIADARK 643
            +E +K++LK +  S LRSCGW ++V   M  +KRL   ++G     +DLK  LI D + 
Sbjct: 601 ELEAIKESLKKDALSHLRSCGWYDKVLISMHAKKRLRTEQSGGEDG-SDLKRRLIEDVKS 659

[Close]

BLAST of CmaCh16G004630 vs. TAIR 10
Match: AT5G57990.1 (ubiquitin-specific protease 23 )

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-55
Identity = 115/324 (35.49%), Postives = 185/324 (57.10%), Query Frame = 0


Query: 25  GLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERRIV 84
           GL+NLGNTC+LNSVLQCLTYT PLA       H   C  A         C  C +++ + 
Sbjct: 108 GLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVAGF-------CALCAIQKHVR 167

Query: 85  RSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGN 144
            +   +  + +P  + + LR  + +FR  RQEDAHE++  +++  H   L         +
Sbjct: 168 TARQANGRILAPKDLVSNLRCISRNFRNCRQEDAHEYMINLLECMHKCSL--------PS 227

Query: 145 GNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHSSSLKEALQ 204
           G  +    +   ++V +IFGG+L+SQVKC  C + SNK D  +D+SLD+  + SL+ AL 
Sbjct: 228 GVPSESSDAYRRSLVHKIFGGSLRSQVKCEQCSHCSNKFDPFLDLSLDISKADSLQRALS 287

Query: 205 KFFQLEVLDGNNK-YKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAIAC 264
           +F  +E+LD   K Y+C+ CK+ V A+KQ+++ + P +L + LKRF+     KID+ +  
Sbjct: 288 RFTAVELLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDF 347

Query: 265 DESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTV 324
             ++ +  F+  G  +   +Y L+G +VH G S+ SGHY  +++ +SG WY  +D+ V  
Sbjct: 348 TSAIDMKPFV-SGPHEGNLKYTLYGVLVHYGRSSHSGHYACFVRTSSGMWYSLDDNRVVQ 407

Query: 325 STLQEVLSEKVYILFFSRTNQRPV 348
            + + V ++K Y+LF+ R  Q  V
Sbjct: 408 VSEKTVFNQKAYMLFYVRDRQNAV 415

[Close]

BLAST of CmaCh16G004630 vs. TAIR 10
Match: AT4G24560.1 (ubiquitin-specific protease 16 )

HSP 1 Score: 210.3 bits (534), Expect = 4.6e-54
Identity = 121/341 (35.48%), Postives = 196/341 (57.48%), Query Frame = 0


Query: 23  PLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERR 82
           P GL N+GN+C+ N V QCL +TPPL  + L+  HS  C        +K +C  C  E+ 
Sbjct: 541 PCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRAC-------TKKEQCFTCGFEKL 600

Query: 83  IVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRN 142
           +V++      L SP  + + L+        G++EDAHEFLR+V+D   + C++  +    
Sbjct: 601 VVKAKEEKSPL-SPNGLLSQLQNIGIFLGNGKEEDAHEFLRFVVDTMQSVCIKASEYDMT 660

Query: 143 GNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHS-SSLKE 202
            +           +T++   FGG L+S++KC+ C   S   +++MD+++++    S+L +
Sbjct: 661 KSSKLE------DTTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDD 720

Query: 203 ALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAI 262
           AL++F + E+LDG NKY+C +CK    A+K++ I +PPN+L I LKRF     GK++K I
Sbjct: 721 ALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLI 780

Query: 263 ACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGF--SAESGHYYAYIKDASGRWYCCNDS 322
              E+L L+ ++  GS+    +YKL+G IVH     +A SGHY  YI++   +WY  +DS
Sbjct: 781 RFPETLDLAPYVSGGSEKSH-DYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDS 840

Query: 323 FVTVSTLQEVLSEKVYILFFSRTNQRP----VTTSTDLASN 357
            V  S ++ +L++  Y+LF++R    P    V T T+ ASN
Sbjct: 841 TVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTE-ASN 864

[Close]

BLAST of CmaCh16G004630 vs. TAIR 10
Match: AT5G65450.1 (ubiquitin-specific protease 17 )

HSP 1 Score: 210.3 bits (534), Expect = 4.6e-54
Identity = 136/390 (34.87%), Postives = 200/390 (51.28%), Query Frame = 0


Query: 23  PLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERR 82
           P GL NLGN+CY N+VLQCL +T PL ++ +R  HS  C        +K  C  C  E  
Sbjct: 328 PFGLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHSKTC-------RKKSWCFVCEFEHL 387

Query: 83  IVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRN 142
           I+++   +  L SP+KI + L+   +H   G++EDAHEFLR  +D   +  L+       
Sbjct: 388 ILKARGGESPL-SPIKILSKLQKIGKHLGPGKEEDAHEFLRCAVDTMQSVFLKEAPA--- 447

Query: 143 GNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHS-SSLKE 202
                  G  +  +T+V   FGG L S++KC++C + S + + +MD+++++     SL+E
Sbjct: 448 ------AGPFAEETTLVGLTFGGYLHSKIKCMACLHKSERPELMMDLTVEIDGDIGSLEE 507

Query: 203 ALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAI 262
           AL +F   EVLDG N+Y C  CK    A+K++ IL+ PNIL + LKRF     GK+ K I
Sbjct: 508 ALAQFTAYEVLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNFGKLSKPI 567

Query: 263 ACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAE--SGHYYAYIKDASGRWYCCNDS 322
              E L +S +M   +    P Y L+  +VH    +   SGHY  YIK   G W+  +DS
Sbjct: 568 HFPELLDISPYMSDPNHGDHPVYSLYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDS 627

Query: 323 FVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGSDGFKMSKPSVVTK 382
            V    L+ VL E  Y+L ++R + RPV+      + G KS Q          K +   +
Sbjct: 628 NVFPVQLETVLLEGAYMLLYARDSPRPVS-----KNGGRKSKQRRNLAAIPSRKGNKKQR 687

Query: 383 MALTRSHVEQSSWK--ELSSSFKVDKPTSS 408
                S + +  W    LSS F     TSS
Sbjct: 688 DGDNNSLLPRVDWSSGSLSSMFSSSDTTSS 695

[Close]

BLAST of CmaCh16G004630 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-51
Identity = 128/327 (39.14%), Postives = 180/327 (55.05%), Query Frame = 0


Query: 23  PLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERR 82
           P GL N GN+CY N+VLQ LT T PL  + LR  HS  C         K  C  C LE+ 
Sbjct: 437 PRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSG-------KDWCLMCELEQH 496

Query: 83  IVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRN 142
           ++        L S  +I + +R        G QEDAHEFLR ++ +  + C     L R 
Sbjct: 497 VMMLRESGGPL-SASRILSHMRSINCQIGDGSQEDAHEFLRLLVASMQSIC-----LERL 556

Query: 143 GNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVL-HSSSLKE 202
           G G          +T+V+ +FGG L+S+VKCL C ++S + + IMD++L++     SL++
Sbjct: 557 G-GETKVDPRLQETTLVQHMFGGRLRSKVKCLRCDHESERYENIMDLTLEIYGWVESLQD 616

Query: 203 ALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAI 262
           AL +F + E LDG N Y+C  C   V ARK++SI + PNIL I LKRF     GKI+K I
Sbjct: 617 ALTQFTRPEDLDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRYGKINKCI 676

Query: 263 ACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGF--SAESGHYYAYIKDASGRWYCCNDS 322
           +  E L +  FM +    P P Y L+  IVH     ++ SGHY +Y+KD  G WY  +DS
Sbjct: 677 SFPEMLDMIPFMTRTGDVP-PLYMLYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDS 736

Query: 323 FVTVSTLQEVLSEKVYILFFSRTNQRP 347
            +    + +V+SE  Y+LF+ R+  RP
Sbjct: 737 EIHPVPMTQVMSEGAYMLFYMRSYPRP 748

The following BLAST results are available for this feature:

BLAST of CmaCh16G004630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPS2	1.4e-180	52.85	Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=UBP2...	[more]
E1B9W9	1.4e-68	34.49	Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus OX=9913 GN=USP42 PE=3 SV=...	[more]
B2RQC2	1.9e-68	34.99	Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus OX=10090 GN=Usp42 PE=1 ...	[more]
D3ZU96	1.9e-68	34.53	Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus OX=10116 GN=Usp42 ...	[more]
Q9H9J4	4.2e-68	35.06	Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens OX=9606 GN=USP42 PE=1 S...	[more]

BLAST of CmaCh16G004630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14400.1	9.8e-182	52.85	ubiquitin-specific protease 25	[more]
AT5G57990.1	4.1e-55	35.49	ubiquitin-specific protease 23	[more]
AT4G24560.1	4.6e-54	35.48	ubiquitin-specific protease 16	[more]
AT5G65450.1	4.6e-54	34.87	ubiquitin-specific protease 17	[more]
AT1G17110.1	1.2e-51	39.14	ubiquitin-specific protease 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PFAM	PF00443	UCH	coord: 25..339 e-value: 1.0E-49 score: 169.4
None	No IPR available	GENE3D	3.90.70.10	Cysteine proteinases	coord: 18..344 e-value: 1.2E-92 score: 312.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..424
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 20..384
None	No IPR available	PANTHER	PTHR24006:SF727	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42	coord: 20..384
None	No IPR available	CDD	cd02661	Peptidase_C19E	coord: 23..340 e-value: 1.30388E-143 score: 417.832
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 284..302
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00972	USP_1	coord: 25..40
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 24..342 score: 50.174271
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 17..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004630.1	CmaCh16G004630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004197	cysteine-type endopeptidase activity
molecular_function	GO:0004843	thiol-dependent deubiquitinase