CmaCh16G004550 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G004550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type E3 ubiquitin ligase
Location	Cma_Chr16: 2277421 .. 2281473 (-)
RNA-Seq Expression	CmaCh16G004550
Synteny	CmaCh16G004550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATAAGCTCGGAAGGCGGAGACAAATGGTTGATGAGAAGTATACAAGGCCTCAAGGGCTTTACAACCATAAAGAAGTGGATCATAAGAAACTTAGGAAACTCATACTTGAATCAAAGCTCGCTCCATGTTATCCGGGAGATGAAGAATCCGCGTCTGATCTTGAAGAATGCCCCATATGCTTTCTGGTTTGTCATCGCTCTTGATGGCTTTGTCTCGTTCATTTTTTTCCTTGTCTTCTTCATTGGTCTCATTCATTTTTTGCCCTTCTGTTTCAGTATTATCCAAGTCTCAATCGATCGAGATGTTGCATGAAAAGCATTTGTACAGGTACGTATAGCGGGAGAAATTCGACAAATGATTTATGATATGAATTCATTCAGTCTGATTTCGCTTCTTTTTCCAGAATGTTTTCTACAGATGAAAGTTCCGAATTCCACCCGGCCTACACAGTATCCTTTTTCACGACTCTCGTACCTCCGTATTGCTTTTTTAGTTTACTTTAAAGCTTTACTTCATCAATGGCATGCTTGTATATCTTAACTTGATGAGGTGCCCCTTTTGCAAAACCTCGAATTATGCTGTGGAGTATAGAGGTGTGAAATCAAAAGAAGAGAAGAGCTTGGAGCAAATTGTAAGACTCGATAATGTCGTATTTGGTATTGTTTTTTTATTAGAACTAAGGGATATCTAAATCTTCTGTCCCGATTGAAACCTACCAGGAAGAACAGCGTGTTATAGAAGCAAAGATTAGAATACGACAGCAGGAACTTCAGGATGATGAGGAAAGAATGCAGAAAAGACTTGAATTAAGTACCTCAAATGCCGGTACTAATGTCGAGGACGGTGAAGACAGCCCTGCAGCTGGTAGGCTTTTACATCGTTCAGGTGTTTCGTTAGTGAAATTCTTTTCTCGTTTCTGATTATTTATCATCGTTTTGCGTGCTTCATTTTTCCAGTTCCATCTTCTCAATCTCCTGCCGAAGATGAGGAAACGGTTAGCTTGCAAGATTCTTGTATGACCCAAATCAGATCGCCACCGCCTCCTATTCCTATTAGAAGCAACAGGTTCTTTTCGTTCTGTTCTGATTTTGCATACATGAACGCATTTTGATTTTCTTTACTTCAAATACGTTTCTGCAAATGATCACTCTCTCTCTCTCACACACACGTGCGCACAAAATTTTAACAGTCATCGAATAATTTACGAATTTGAACCCTTCAAAATGATTTCTACTGAACATAGCTCTTCCAGTAATTTTAACTTTCACTCGTTGCTTAATTTCCTTACCTGCATTTTGGACAGAGAATAACTTGTTTTCTCCACATATTTAAGGTATTTATCTGTAATGAACACTTGGTGGGTATCTAGACACCCCTTAAGAAAGCTCTCTAATACACTTGATTTTTTAAAAAGATATAATTTAGCGTTAGCTACCCGAAATGGTCAGATGGGAAACAAGTGATACCTAGCATGTCCTTATTATCACTAGATCCAACATAAAAGCATATTTTCTCTAGCTTTTGAGAGGGTAAGGACGATATCAATTCCGATCACTTGCAATTTACAAATGATTCGAATGTTTAGTATGGATGATGAGGAAAGATTACTGAATCAAATGATATTCCTTGATCTTATTAATTGGAGTGTCACATACTTGCCTCCTAATAATGGTGGTGGTCTTGGTCCGAACTTTGGAAGCACAGTGTCATTTTGGTGGTTCATGAAATAGGGTAGGCTCATTAGTGGAAGAAACCATTGGGGTTTCTTAGGGAAGAATAATTTGCAAGTTGAGTAGTTTTCTTCTTTTTGAGATAGATAGGCTGTAGTAACAAGATGGAGGGCTCTACTAATGTTTTACTGAATAAGTGGTGGTGTAAGGTCACAACCATACTATAAATAGAGTAGGTTGTGCCCCTCACGTATAGACAAACAAAGGAGCGACACGGAAGCAGCGCCCAACCGGCCATGCAAGGGCTGAGACAAGATAAGTGTTATTCATGTGGGATTTTTTCAGATTTTGCGGGATCGAGGAGGACGGTGCATCATTTGAAAGATGTACAGTGAAGCTAAGATGGGGCATAGCCAAGATAGAGATAACAAGTAGACAAGAGTGTTAAAGATAGGCTTGATTAGGGTCAGGTAGGGCAACAAGCCTTAATCTCAAAAGTTGGGGGTTTGGAAGGAGTTTGGGCAGGTGGCTTTGGAGTTAAGTCCGTCTATATGAAAGATGGAAGCTTGCCAAATTTGGTATCAATTGGACACTAGACGGTCGCTCCATGACATCGTATAACTGTTCGTTAAAATTATGTTTGCTCTTGCGAAACCAAAAATGCGTAAGAAGGTATTATAGGGAGAGGCATGGTGTCCAACTCTCCACCATCCTTGGGCCCCATGCCTAAGCAAGCTACTTTATGGAACATATCTGTGTGTGTCACAATTTGGGCGAGCATTGCAATACGAATGTCTCAGGTGACTTCTTTGAAATGGGTCTTTCAAGGGCAATGTCGGACGACGCGGGTGTGCTGACATTGCGCCCTCGTCCATGTGTCGGAAGTGGTATATCCACCCCCTATTAGGTACGAAATCCGTAAATGACTTAGCATGGACACGGTAGGGTCTATGCCTCTGAAACCCGGGTGGAAGGCCAGTTCTTGATAGTATGTCCAAGCGAGCTATAATGGTGATGACATCCCGAGACTTGGGATGACATCATGATATGTGGTCCATATTGTTGAGAACTAAGATGACAAAATGAGATGCAACATTGCATGGAAGAGATCTTGACCCCAGGTAAAGGCAAGGTCGAATCAGATGAATTGGCTTAGTGCAGAGGCAAGTCAGATAGAGTCATAAACGATTGAACATGCACGCACGTGTGCATGTGTTGTTAAATAAACTTAGACTCCGCCTGAGTTGTTCAGTTGAGGAAGATATACCTCGCCTAAGGTTAGACGAAACCACAAAGCTGGACGAAAGATGTGAACGAGGCTTGAGTTTTCCTTAAGGCTTGTCAAGGAAATGCAATATGTCCTATCAAATCTTTTTGTAGCCTTTTCCTTGGCTTTTTACATGTTGTGTCCCTACTTTATGAGATGGTTGGTTTTTCTGGCTGCTATCTAATAATCTCCCATTTAGAACTTTCAGGGATGATGAATTTGACCTCGATCTTGAGGACATAATGGTCATGGAAGCAATCTGGCTCTCGATTCAGGTAAATACCTCGACGTAATGTTGTCCCAACGAGTTTTAACATCTATTATATAGTCTATGGAGCCTGAAAATTTTGATGTACTCTAGTGCTAAACCGACCAAGCAATGGTTAACGTTGTGTAGTAGCTGTTATCACGTTCCAATTACTGAGTAGGGTATGGTTTTGTTCATCTTCACTGTATTAAACTGTATAAAAATTTGAAATCTTCAGGAGAAAGGAAGGCATAAAGATCCAGTGTACGCTGAGGCTGCTTCTTCTGATCAATATGCTGCAACAGAAGGTCGATATATCTCTCCAGCCGCCATTCCGTTAGCTGGAACATCATCGTCGTCCCCGTCTGGAGGTCTTGCTTGTGCCATAGCTGCTCTTGCAGAGCAGCAGCAGATGGGTAGAGGACCGTCACCCACTTGCACGAATGGAGATTCACCCGTCTTCAACATGCTTCCTGGAGCCACGGAATTCTACAGCAGGATGAACGCCAATGAAGAAAACTATCCACCCGCGCAAGTCTCGATCAACTCAGAAAGTTATGCACCTGCACAAGTTTCAATCGACACGGTACCAGACTGTAGGATGATGTTAACAAGAAATGAGGGAGAGTGGAATCTTGATCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAACCGACAGCCAATGCTATGGATGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

mRNA sequence

ATGGGTAATAAGCTCGGAAGGCGGAGACAAATGGTTGATGAGAAGTATACAAGGCCTCAAGGGCTTTACAACCATAAAGAAGTGGATCATAAGAAACTTAGGAAACTCATACTTGAATCAAAGCTCGCTCCATGTTATCCGGGAGATGAAGAATCCGCGTCTGATCTTGAAGAATGCCCCATATGCTTTCTGTATTATCCAAGTCTCAATCGATCGAGATGTTGCATGAAAAGCATTTGTACAGAATGTTTTCTACAGATGAAAGTTCCGAATTCCACCCGGCCTACACAGTGCCCCTTTTGCAAAACCTCGAATTATGCTGTGGAGTATAGAGGTGTGAAATCAAAAGAAGAGAAGAGCTTGGAGCAAATTGAAGAACAGCGTGTTATAGAAGCAAAGATTAGAATACGACAGCAGGAACTTCAGGATGATGAGGAAAGAATGCAGAAAAGACTTGAATTAAGTACCTCAAATGCCGGTACTAATGTCGAGGACGGTGAAGACAGCCCTGCAGCTGTTCCATCTTCTCAATCTCCTGCCGAAGATGAGGAAACGGTTAGCTTGCAAGATTCTTGTATGACCCAAATCAGATCGCCACCGCCTCCTATTCCTATTAGAAGCAACAGGGATGATGAATTTGACCTCGATCTTGAGGACATAATGGTCATGGAAGCAATCTGGCTCTCGATTCAGGAGAAAGGAAGGCATAAAGATCCAGTGTACGCTGAGGCTGCTTCTTCTGATCAATATGCTGCAACAGAAGGTCGATATATCTCTCCAGCCGCCATTCCGTTAGCTGGAACATCATCGTCGTCCCCGTCTGGAGGTCTTGCTTGTGCCATAGCTGCTCTTGCAGAGCAGCAGCAGATGGGTAGAGGACCGTCACCCACTTGCACGAATGGAGATTCACCCGTCTTCAACATGCTTCCTGGAGCCACGGAATTCTACAGCAGGATGAACGCCAATGAAGAAAACTATCCACCCGCGCAAGTCTCGATCAACTCAGAAAGTTATGCACCTGCACAAGTTTCAATCGACACGGTACCAGACTGTAGGATGATGTTAACAAGAAATGAGGGAGAGTGGAATCTTGATCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAACCGACAGCCAATGCTATGGATGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

Coding sequence (CDS)

ATGGGTAATAAGCTCGGAAGGCGGAGACAAATGGTTGATGAGAAGTATACAAGGCCTCAAGGGCTTTACAACCATAAAGAAGTGGATCATAAGAAACTTAGGAAACTCATACTTGAATCAAAGCTCGCTCCATGTTATCCGGGAGATGAAGAATCCGCGTCTGATCTTGAAGAATGCCCCATATGCTTTCTGTATTATCCAAGTCTCAATCGATCGAGATGTTGCATGAAAAGCATTTGTACAGAATGTTTTCTACAGATGAAAGTTCCGAATTCCACCCGGCCTACACAGTGCCCCTTTTGCAAAACCTCGAATTATGCTGTGGAGTATAGAGGTGTGAAATCAAAAGAAGAGAAGAGCTTGGAGCAAATTGAAGAACAGCGTGTTATAGAAGCAAAGATTAGAATACGACAGCAGGAACTTCAGGATGATGAGGAAAGAATGCAGAAAAGACTTGAATTAAGTACCTCAAATGCCGGTACTAATGTCGAGGACGGTGAAGACAGCCCTGCAGCTGTTCCATCTTCTCAATCTCCTGCCGAAGATGAGGAAACGGTTAGCTTGCAAGATTCTTGTATGACCCAAATCAGATCGCCACCGCCTCCTATTCCTATTAGAAGCAACAGGGATGATGAATTTGACCTCGATCTTGAGGACATAATGGTCATGGAAGCAATCTGGCTCTCGATTCAGGAGAAAGGAAGGCATAAAGATCCAGTGTACGCTGAGGCTGCTTCTTCTGATCAATATGCTGCAACAGAAGGTCGATATATCTCTCCAGCCGCCATTCCGTTAGCTGGAACATCATCGTCGTCCCCGTCTGGAGGTCTTGCTTGTGCCATAGCTGCTCTTGCAGAGCAGCAGCAGATGGGTAGAGGACCGTCACCCACTTGCACGAATGGAGATTCACCCGTCTTCAACATGCTTCCTGGAGCCACGGAATTCTACAGCAGGATGAACGCCAATGAAGAAAACTATCCACCCGCGCAAGTCTCGATCAACTCAGAAAGTTATGCACCTGCACAAGTTTCAATCGACACGGTACCAGACTGTAGGATGATGTTAACAAGAAATGAGGGAGAGTGGAATCTTGATCATCAATCAGAAGAAGCTGAAGCTGGGACGAGCTACCCGACATCGGATTCAACCAAAGACAATGGTACTGAACCGACAGCCAATGCTATGGATGGTGGAAACCAAGCGACAATGCCGATCATTCCTCAGAATTTTGAAGAGCAGATGATGCTCGCCATGGCTGTTTCTCTAGCAGAGGCTCGAGAAGTGTGTACTGGACCAGGTCATTCCTGGCAGCAGTGA

Protein sequence

MGNKLGRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESASDLEECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKEEKSLEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVEDGEDSPAAVPSSQSPAEDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKGRHKDPVYAEAASSDQYAATEGRYISPAAIPLAGTSSSSPSGGLACAIAALAEQQQMGRGPSPTCTNGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDCRMMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNFEEQMMLAMAVSLAEAREVCTGPGHSWQQ

Homology

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BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot
Match: Q93YV5 (E3 ubiquitin-protein ligase DA2 OS=Arabidopsis thaliana OX=3702 GN=DA2 PE=1 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.4e-99
Identity = 221/449 (49.22%), Postives = 279/449 (62.14%), Query Frame = 0


Query: 1   MGNKLGRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESASDLEECP 60
           MGNKLGR+RQ+V+E+YT+PQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECP
Sbjct: 1   MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKEEKS 120
           ICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQCPFCKT NYAVEYRGVKSKEEK 
Sbjct: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query: 121 LEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVEDGEDSPAAVPSSQSPA 180
           +EQ+EEQRVIEAKIR+RQ+E+QDDEE+MQKRLE  +S+      + E    +  S  S  
Sbjct: 121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTSAISYNSLM 180

Query: 181 EDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKGRHKDPV 240
           +D E    Q++ + +  S P     R NR+DE D+DLE++MVMEAIWLS+QE G  ++  
Sbjct: 181 DDGEIAPSQNASVVRQHSRP-----RGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSA 240

Query: 241 YAEAASSDQYAATEGRYIS--PAAIPLAGTSS-SSPSGGLACAIAALAEQQQMGRGPSPT 300
             E  SS QY      Y+S  P   P+   ++ SS SGGL+CAI+ALAE+Q +G   S  
Sbjct: 241 SGEITSSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAERQMVGESSSHN 300

Query: 301 CT-NGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDCRMMLT 360
              N +   ++MLPG                      N +SY   +  +D +        
Sbjct: 301 HNHNVNVSSYSMLPG----------------------NCDSYYDIEQEVDGI-------- 360

Query: 361 RNEGEWNLDHQSEEAEAG------TSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNF 420
             +   +  H  E  E G      +SY T +   +    P            + I+P++F
Sbjct: 361 --DNHHHHRHHYEMGETGSSNSYVSSYMTGEGFHNFPPPP-----------PLVIVPESF 401

Query: 421 EEQMMLAMAVSLAE--AREVCTGPGHSWQ 438
           EEQMM+AMAVS+AE  A   C     +WQ
Sbjct: 421 EEQMMMAMAVSMAEVHATTTCAPTEVTWQ 401

[Close]

BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot
Match: A4GWX9 (E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. indica OX=39946 GN=GW2 PE=1 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 4.2e-88
Identity = 202/445 (45.39%), Postives = 266/445 (59.78%), Query Frame = 0


Query: 1   MGNKL-GRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESASDLE 60
           MGN++ GRR+  V+E+YTRPQGLY H+++D KKLRKLILE+KLAPCY G  D  +A+DLE
Sbjct: 1   MGNRIGGRRKAGVEERYTRPQGLYEHRDIDQKKLRKLILEAKLAPCYMGADDAAAAADLE 60

Query: 61  ECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKE 120
           ECPICFLYYPSLNRS+CC K ICTECFLQMK  ++ +PTQCPFCKT +YAVEYRGVK+KE
Sbjct: 61  ECPICFLYYPSLNRSKCCSKGICTECFLQMKPTHTAQPTQCPFCKTPSYAVEYRGVKTKE 120

Query: 121 EKSLEQIEEQRVIEAKIRIRQQELQDDEERM-QKRLELSTSNAGTNVEDGE-----DSPA 180
           E+S+EQ EEQ+VIEA++R+RQQ LQD+E++M +K+   S+S   T  ++ E      +  
Sbjct: 121 ERSIEQFEEQKVIEAQMRMRQQALQDEEDKMKRKQNRCSSSRTITPTKEVEYRDICSTSF 180

Query: 181 AVPSSQSPAEDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQ 240
           +VPS +   ++ E  S + SC  Q  +   P   R NRDD  D+++ED+MVMEAIW SIQ
Sbjct: 181 SVPSYRCAEQETECCSSEPSCSAQ--TSMRPFHSRHNRDDNIDMNIEDMMVMEAIWRSIQ 240

Query: 241 EKGRHKDPVYAEAASSDQYAATEGRYISPAAIPLAGTSSSSPSGGLACAIAALAEQQQMG 300
           E+G   +PV        + +  E +   PAA     +      GG +CA+AA+AE Q   
Sbjct: 241 EQGSIGNPVCGNFMPVTEPSPRERQPFVPAA-----SLEIPHGGGFSCAVAAMAEHQPPS 300

Query: 301 RGPSPTCTNGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDC 360
              S    +   PVF+M             N E+ P +   I               P C
Sbjct: 301 MDFSYMAGSSAFPVFDMFRRPCNIAGGSMCNLESSPESWSGI--------------APSC 360

Query: 361 RMMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNFE 420
              + R EGE + DH SE AEAGTSY  SD   D GT P     +    A     P++ E
Sbjct: 361 SREVVREEGECSADHWSEGAEAGTSYAGSDIVADAGTMPQLPFAENFAMAPSHFRPESIE 420

Query: 421 EQMMLAMAVSLAEAREVCTGPGHSW 437
           EQMM +MA+SLA+        G +W
Sbjct: 421 EQMMFSMALSLADGHGRTHSQGLAW 424

[Close]

BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot
Match: B9F4Q9 (E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. japonica OX=39947 GN=GW2 PE=1 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 4.2e-88
Identity = 202/445 (45.39%), Postives = 266/445 (59.78%), Query Frame = 0


Query: 1   MGNKL-GRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPG--DEESASDLE 60
           MGN++ GRR+  V+E+YTRPQGLY H+++D KKLRKLILE+KLAPCY G  D  +A+DLE
Sbjct: 1   MGNRIGGRRKAGVEERYTRPQGLYEHRDIDQKKLRKLILEAKLAPCYMGADDAAAAADLE 60

Query: 61  ECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKE 120
           ECPICFLYYPSLNRS+CC K ICTECFLQMK  ++ +PTQCPFCKT +YAVEYRGVK+KE
Sbjct: 61  ECPICFLYYPSLNRSKCCSKGICTECFLQMKPTHTAQPTQCPFCKTPSYAVEYRGVKTKE 120

Query: 121 EKSLEQIEEQRVIEAKIRIRQQELQDDEERM-QKRLELSTSNAGTNVEDGE-----DSPA 180
           E+S+EQ EEQ+VIEA++R+RQQ LQD+E++M +K+   S+S   T  ++ E      +  
Sbjct: 121 ERSIEQFEEQKVIEAQMRMRQQALQDEEDKMKRKQNRCSSSRTITPTKEVEYRDICSTSF 180

Query: 181 AVPSSQSPAEDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQ 240
           +VPS +   ++ E  S + SC  Q  +   P   R NRDD  D+++ED+MVMEAIW SIQ
Sbjct: 181 SVPSYRCAEQETECCSSEPSCSAQ--TSMRPFHSRHNRDDNIDMNIEDMMVMEAIWRSIQ 240

Query: 241 EKGRHKDPVYAEAASSDQYAATEGRYISPAAIPLAGTSSSSPSGGLACAIAALAEQQQMG 300
           E+G   +PV        + +  E +   PAA     +      GG +CA+AA+AE Q   
Sbjct: 241 EQGSIGNPVCGNFMPVTEPSPRERQPFVPAA-----SLEIPHGGGFSCAVAAMAEHQPPS 300

Query: 301 RGPSPTCTNGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDC 360
              S    +   PVF+M             N E+ P +   I               P C
Sbjct: 301 MDFSYMAGSSAFPVFDMFRRPCNIAGGSMCNLESSPESWSGI--------------APSC 360

Query: 361 RMMLTRNEGEWNLDHQSEEAEAGTSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNFE 420
              + R EGE + DH SE AEAGTSY  SD   D GT P     +    A     P++ E
Sbjct: 361 SREVVREEGECSADHWSEGAEAGTSYAGSDIVADAGTMPQLPFAENFAMAPSHFRPESIE 420

Query: 421 EQMMLAMAVSLAEAREVCTGPGHSW 437
           EQMM +MA+SLA+        G +W
Sbjct: 421 EQMMFSMALSLADGHGRTHSQGLAW 424

[Close]

BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot
Match: Q940G8 (E3 ubiquitin-protein ligase DA2L OS=Arabidopsis thaliana OX=3702 GN=DA2L PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 9.4e-88
Identity = 197/334 (58.98%), Postives = 236/334 (70.66%), Query Frame = 0


Query: 1   MGNKLGRRRQMVDEKYTRP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAS---DL 60
           MGNKLGR+RQ+VDE+YT+P QGLY  K+VD KKL+KLILESKLAPCYPG EE+ S   DL
Sbjct: 1   MGNKLGRKRQIVDERYTKPQQGLYMSKDVDIKKLKKLILESKLAPCYPGLEETPSSHHDL 60

Query: 61  EECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSK 120
           EECPICFLYYPSLNRSRCCMKSICTECFL+MK PNS +PTQCPFCKTSNYAVEYRG K+K
Sbjct: 61  EECPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTSNYAVEYRGGKTK 120

Query: 121 EEKSLEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVE--DGEDSPAAVP 180
           EEKS EQIEEQRVIEAKIR+RQ+E++DDEERMQKRLE  +S++ T+    D E   AA  
Sbjct: 121 EEKSFEQIEEQRVIEAKIRMRQKEVEDDEERMQKRLESYSSSSSTSAATLDTEYGSAA-- 180

Query: 181 SSQSPAEDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKG 240
                 +DEE VS Q+SC+       P    +  RD +FD DLEDIMVMEAIWLS+QE G
Sbjct: 181 -----EDDEEIVSSQESCL-------PSHHPQVTRDGQFDFDLEDIMVMEAIWLSMQEPG 240

Query: 241 RHKDPVYAEAASSDQYAATEGRYISPAAIPLAGTSSSSPSGGLACAIAALAEQQQMGRGP 300
             ++       +S    + + R   P+       SSSSPSGGLACAIA LAE+QQM  G 
Sbjct: 241 IQRN-------TSPDDISEKDRNEEPST-----PSSSSPSGGLACAIAVLAERQQM-VGV 300

Query: 301 SPTCTNGDSPVFNMLP--GATEFYSRMNANEENY 327
           S +  N +    N++P  G    Y+ +  +  +Y
Sbjct: 301 SSSNQNVNLASQNLVPDNGNNSHYNAIEQDSNHY 307

[Close]

BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot
Match: A5DQJ8 (Protein SIP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SIP5 PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-10
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 54  SDLEECPICFLYYPS-LNRSRCCMKSICTECFLQMK-------------VPNS------- 111
           SD  ECPICFLYYPS LN SRCC++ ICTECF+Q+K              PN        
Sbjct: 210 SDASECPICFLYYPSNLNISRCCLQPICTECFVQIKRLDPHPPHDDASNQPNGDSLPHTL 269

[Close]

BLAST of CmaCh16G004550 vs. TAIR 10
Match: AT1G78420.1 (RING/U-box superfamily protein )

HSP 1 Score: 364.0 bits (933), Expect = 1.7e-100
Identity = 221/449 (49.22%), Postives = 279/449 (62.14%), Query Frame = 0


Query: 1   MGNKLGRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESASDLEECP 60
           MGNKLGR+RQ+V+E+YT+PQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECP
Sbjct: 1   MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKEEKS 120
           ICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQCPFCKT NYAVEYRGVKSKEEK 
Sbjct: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query: 121 LEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVEDGEDSPAAVPSSQSPA 180
           +EQ+EEQRVIEAKIR+RQ+E+QDDEE+MQKRLE  +S+      + E    +  S  S  
Sbjct: 121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTSAISYNSLM 180

Query: 181 EDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKGRHKDPV 240
           +D E    Q++ + +  S P     R NR+DE D+DLE++MVMEAIWLS+QE G  ++  
Sbjct: 181 DDGEIAPSQNASVVRQHSRP-----RGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSA 240

Query: 241 YAEAASSDQYAATEGRYIS--PAAIPLAGTSS-SSPSGGLACAIAALAEQQQMGRGPSPT 300
             E  SS QY      Y+S  P   P+   ++ SS SGGL+CAI+ALAE+Q +G   S  
Sbjct: 241 SGEITSSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAERQMVGESSSHN 300

Query: 301 CT-NGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDCRMMLT 360
              N +   ++MLPG                      N +SY   +  +D +        
Sbjct: 301 HNHNVNVSSYSMLPG----------------------NCDSYYDIEQEVDGI-------- 360

Query: 361 RNEGEWNLDHQSEEAEAG------TSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNF 420
             +   +  H  E  E G      +SY T +   +    P            + I+P++F
Sbjct: 361 --DNHHHHRHHYEMGETGSSNSYVSSYMTGEGFHNFPPPP-----------PLVIVPESF 401

Query: 421 EEQMMLAMAVSLAE--AREVCTGPGHSWQ 438
           EEQMM+AMAVS+AE  A   C     +WQ
Sbjct: 421 EEQMMMAMAVSMAEVHATTTCAPTEVTWQ 401

[Close]

BLAST of CmaCh16G004550 vs. TAIR 10
Match: AT1G78420.2 (RING/U-box superfamily protein )

HSP 1 Score: 364.0 bits (933), Expect = 1.7e-100
Identity = 221/449 (49.22%), Postives = 279/449 (62.14%), Query Frame = 0


Query: 1   MGNKLGRRRQMVDEKYTRPQGLYNHKEVDHKKLRKLILESKLAPCYPGDEESASDLEECP 60
           MGNKLGR+RQ+V+E+YT+PQGLY +K+VD KKLRKLI+ESKLAPCYPGD+ES  DLEECP
Sbjct: 1   MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSKEEKS 120
           ICFLYYPSLNRSRCCMKSICTECFLQMK PNS RPTQCPFCKT NYAVEYRGVKSKEEK 
Sbjct: 61  ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query: 121 LEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVEDGEDSPAAVPSSQSPA 180
           +EQ+EEQRVIEAKIR+RQ+E+QDDEE+MQKRLE  +S+      + E    +  S  S  
Sbjct: 121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTSAISYNSLM 180

Query: 181 EDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKGRHKDPV 240
           +D E    Q++ + +  S P     R NR+DE D+DLE++MVMEAIWLS+QE G  ++  
Sbjct: 181 DDGEIAPSQNASVVRQHSRP-----RGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSA 240

Query: 241 YAEAASSDQYAATEGRYIS--PAAIPLAGTSS-SSPSGGLACAIAALAEQQQMGRGPSPT 300
             E  SS QY      Y+S  P   P+   ++ SS SGGL+CAI+ALAE+Q +G   S  
Sbjct: 241 SGEITSSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAERQMVGESSSHN 300

Query: 301 CT-NGDSPVFNMLPGATEFYSRMNANEENYPPAQVSINSESYAPAQVSIDTVPDCRMMLT 360
              N +   ++MLPG                      N +SY   +  +D +        
Sbjct: 301 HNHNVNVSSYSMLPG----------------------NCDSYYDIEQEVDGI-------- 360

Query: 361 RNEGEWNLDHQSEEAEAG------TSYPTSDSTKDNGTEPTANAMDGGNQATMPIIPQNF 420
             +   +  H  E  E G      +SY T +   +    P            + I+P++F
Sbjct: 361 --DNHHHHRHHYEMGETGSSNSYVSSYMTGEGFHNFPPPP-----------PLVIVPESF 401

Query: 421 EEQMMLAMAVSLAE--AREVCTGPGHSWQ 438
           EEQMM+AMAVS+AE  A   C     +WQ
Sbjct: 421 EEQMMMAMAVSMAEVHATTTCAPTEVTWQ 401

[Close]

BLAST of CmaCh16G004550 vs. TAIR 10
Match: AT1G17145.1 (RING/U-box superfamily protein )

HSP 1 Score: 325.5 bits (833), Expect = 6.7e-89
Identity = 197/334 (58.98%), Postives = 236/334 (70.66%), Query Frame = 0


Query: 1   MGNKLGRRRQMVDEKYTRP-QGLYNHKEVDHKKLRKLILESKLAPCYPGDEESAS---DL 60
           MGNKLGR+RQ+VDE+YT+P QGLY  K+VD KKL+KLILESKLAPCYPG EE+ S   DL
Sbjct: 1   MGNKLGRKRQIVDERYTKPQQGLYMSKDVDIKKLKKLILESKLAPCYPGLEETPSSHHDL 60

Query: 61  EECPICFLYYPSLNRSRCCMKSICTECFLQMKVPNSTRPTQCPFCKTSNYAVEYRGVKSK 120
           EECPICFLYYPSLNRSRCCMKSICTECFL+MK PNS +PTQCPFCKTSNYAVEYRG K+K
Sbjct: 61  EECPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTSNYAVEYRGGKTK 120

Query: 121 EEKSLEQIEEQRVIEAKIRIRQQELQDDEERMQKRLELSTSNAGTNVE--DGEDSPAAVP 180
           EEKS EQIEEQRVIEAKIR+RQ+E++DDEERMQKRLE  +S++ T+    D E   AA  
Sbjct: 121 EEKSFEQIEEQRVIEAKIRMRQKEVEDDEERMQKRLESYSSSSSTSAATLDTEYGSAA-- 180

Query: 181 SSQSPAEDEETVSLQDSCMTQIRSPPPPIPIRSNRDDEFDLDLEDIMVMEAIWLSIQEKG 240
                 +DEE VS Q+SC+       P    +  RD +FD DLEDIMVMEAIWLS+QE G
Sbjct: 181 -----EDDEEIVSSQESCL-------PSHHPQVTRDGQFDFDLEDIMVMEAIWLSMQEPG 240

Query: 241 RHKDPVYAEAASSDQYAATEGRYISPAAIPLAGTSSSSPSGGLACAIAALAEQQQMGRGP 300
             ++       +S    + + R   P+       SSSSPSGGLACAIA LAE+QQM  G 
Sbjct: 241 IQRN-------TSPDDISEKDRNEEPST-----PSSSSPSGGLACAIAVLAERQQM-VGV 300

Query: 301 SPTCTNGDSPVFNMLP--GATEFYSRMNANEENY 327
           S +  N +    N++P  G    Y+ +  +  +Y
Sbjct: 301 SSSNQNVNLASQNLVPDNGNNSHYNAIEQDSNHY 307

The following BLAST results are available for this feature:

BLAST of CmaCh16G004550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV5	2.4e-99	49.22	E3 ubiquitin-protein ligase DA2 OS=Arabidopsis thaliana OX=3702 GN=DA2 PE=1 SV=1	[more]
A4GWX9	4.2e-88	45.39	E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. indica OX=39946 GN=GW2 PE...	[more]
B9F4Q9	4.2e-88	45.39	E3 ubiquitin-protein ligase GW2 OS=Oryza sativa subsp. japonica OX=39947 GN=GW2 ...	[more]
Q940G8	9.4e-88	58.98	E3 ubiquitin-protein ligase DA2L OS=Arabidopsis thaliana OX=3702 GN=DA2L PE=2 SV...	[more]
A5DQJ8	2.1e-10	44.30	Protein SIP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381...	[more]

BLAST of CmaCh16G004550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78420.1	1.7e-100	49.22	RING/U-box superfamily protein	[more]
AT1G78420.2	1.7e-100	49.22	RING/U-box superfamily protein	[more]
AT1G17145.1	6.7e-89	58.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 369..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..187
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 57..108
IPR039301	Protein Sip5/DA2	PANTHER	PTHR31315	PROTEIN SIP5	coord: 1..432
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..102 score: 8.786275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004550.1	CmaCh16G004550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0046620	regulation of organ growth
biological_process	GO:0080113	regulation of seed growth
molecular_function	GO:0061630	ubiquitin protein ligase activity