CmaCh16G004370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G004370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pathogen-related protein-like
Location	Cma_Chr16: 2177971 .. 2180891 (-)
RNA-Seq Expression	CmaCh16G004370
Synteny	CmaCh16G004370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGAGCTGTGAGGAAGGCATTATGGGTGGTGATAAGTACAGAGCTTCGTTGCATTTGGAGGGTCCTACAGTTGAATGGAGGATGGGAAAGCCCCCAAATTATGAAGCTGTGAACAAGCTGTTTGAAGATGGAAGAACAAAGGTTGTTTCTTTTTGTTTACCAGATCTAATATCATCTGCGTTGCTTCATTTGTTGTGTGTTCTTCATAGGTGTGGCCAAAAGGATCTGTGGAAGAACAAGTGCAGAATATTATAAAATCATTGCAAATGGAGTTTGCTTACAAGACTAGACCACAAGATTTCAAGAACATAAACCTTCACAATTTCTTATGTTCTATCAATGGTAATTCATTTGTTTCTAGCACATTTATCTTCTAAATACGTTCTTTTTTTTCACACGTAAACGATAAAAATGAATAAATAAGTCCGAGTCTACCGCTAGTAGATATTGTCTTCTTTCGGGTTTTCCTTTCGAATTTCTCCTCAAAGTTTTTAAAACGCGTCTACTAGAGTACAGTGAATATTTTGTCCTCGTTCACACACTGCCCGTGGCCTCCCTTTAGAAGGAATCTGCTAGAGAGAGGTTTCCGTACCCTTATAAAAAATGTTTTGTCTTTATTGGCACACTGTCCGGTGGCTACCGTTTAAAAGGGTATGCTTGGGAGAGGTTTCCGTACCCCTTATAAAGAATGTTTTGTTTCTCTCTCCAACCGATGTGCGATCTCAAAATTCACCTGGAGTCCACCCCACTTTAAGGTCAACGTTCTCGCTGACACACCGTCTGGAGTTTATTTATCCCACTTCAGAACTCAGCATCCTTGTTGGCACACTGCCTAGTATCTGGCTGGCACTAATACCATTTGTAACAGCTCAAATATACAGTATTGCCCTCTTTGGGTTTTCCTTTTAGAGTTTAAATGAGTCTGCTAGTGAAAGATTTCAATATCGTTATAAAAAATGTTTTGTTCCCCTCTCCAAATCTCAAAATTCACCTGGAGTCTACCCCACTTCAGGGTCAGCGTCTTCGCTGGCACACCGCCTAGAGTCCATCCTACTTTAGGGTTCAGCGTCCTTGTTGGCACACCGCCTAGTATCTAACTGGCTCTGATACGATTTGTAACAGCTCAAGTTCATAGCTAGCAGCTAGTTCTCTTTGTGCTTCCCCTTTCGAACTTCCCATCAAAGTTTTTAAACTGAGTCTGCTAGAGAGAGGTTTCAATACCCTTTTAAAAAATGTTTTGTTACCTCATCCAATTGATGTGAGATCTCAAAATTCATTTAGAGTCCACCCCACTGGCCAGCGTTCTCGTTGGCACACGGTCTGGAGTCCATCCCACTTCAGGGCTCAGTGTCCTTGTTGGCACACCGAGCATCTGGCTGGCTCTTATACCATTTGTAACAACCCAGCCTACCGCTAGCAGATATTGTCCTCTCTGAGCTTTCCCTCTTCCAAGCTTCCACTTAAGGTTTTTAAAACGCATATGGTAGGGAGAGGCTTCTATACCTTGTAAAGAATGTTTTGTTTTGTTCTCACCTCCAACCGACGTGGGATCTCACACCATCACTCGCAAATATTGTCCTCTTCGACCCGTAACGTATAGCTCTCAGCCTCACAATTTTAAAACGCGTCAACAAAGAAGATGTTTTCACACCCTTATAAAGAATTGCTCCGTTCCTCTCTTCAACCGATATAGGATCTCACAATTTCCATCTAAGTTGATCATTTAGCTAATTTATAGAGAGTTCTTATCTTTCAATCTACTAAGTCGGGTCTAACGTATCACAAAACTAACCTAACTCGATTCATAAACACCCTTAATTACATGTAATTAAATTGTATTAAGAGAAGTAGTTTACAACTATTACTCTAAATTAAACACTAAAAGATTAATTAATTAATTACAGGAAGAACAGTCTCATGTGAAGAAGCATTGAAGCTTGGAAGCTTCAACACATTTATGAAGAATCCTTTACCACAGGAATTCCATTACTTCAAACCACAAGAAGAGACATCTGAGTCGACTCATAATGACTTCAAGACATGTTTTCCAAGAGGGTTTGCATGGGAAGTCATAGAGGTTTATTCTCCTCCTCCTTTGATTGCCTACAAATTTAGGCATTGGGGTTTCTTTGAAGGACCTTACAAATCCCATTCCCCAACCGGCGAAATGGTCGAATTCTTCGGCATGGGAATTCTCAAGGTAAGGTCGAGATTCAATAACGACCTTTCTTATCAAAAACATTTCTTATAAGCACGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAACCATGAGGTTGACGATGATACGTAACGAGCCAAAACGGACAATAGGTGCTAGCAATGAGCTTAGACTGCTACACAGAGAAAATTTGTCAAAACCACCACACCTGAATGGTGTGAAAGTTCTAGATATTTGACTATAATAAAAGATCAAATATGATATATATGGTAAACTATAATTCAGTACTAAATATCCTTAACACACACAAACGTATCCCTATACATATTTAATGTCACGCTCATAAATGGTCGGGGTCGGATCAATTTGTGTTCTCGTCGACTAATTGAAATGATGTTTATTTGGACAGGTGGATTCATCATGGAAGATTGAAGAAGGTCATGTGTTCTTTGATCCAGCTGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACAGCTGATTCGTCTGCCTCTGCCTGTCCACTCTTTGATCAGCTGAAGTAGTTCCACAAACACTGAAATGAATAAAAATGTGTGTCTCAGACATTCACACCACTATCCATTAGTTCTAATCTTGTTTGTTTGTAGTTCTTACGTTGTTGTTATGTTTGTTCGTTGTATCGTTTATGTCGGTGTCTATTAAATATGAATGATAATAAGTGTGGTTTGCATATGATATTAAGTCGGAGCGGTCTTT

mRNA sequence

AGATGAGCTGTGAGGAAGGCATTATGGGTGGTGATAAGTACAGAGCTTCGTTGCATTTGGAGGGTCCTACAGTTGAATGGAGGATGGGAAAGCCCCCAAATTATGAAGCTGTGAACAAGCTGTTTGAAGATGGAAGAACAAAGGTGTGGCCAAAAGGATCTGTGGAAGAACAAGTGCAGAATATTATAAAATCATTGCAAATGGAGTTTGCTTACAAGACTAGACCACAAGATTTCAAGAACATAAACCTTCACAATTTCTTATGTTCTATCAATGGAAGAACAGTCTCATGTGAAGAAGCATTGAAGCTTGGAAGCTTCAACACATTTATGAAGAATCCTTTACCACAGGAATTCCATTACTTCAAACCACAAGAAGAGACATCTGAGTCGACTCATAATGACTTCAAGACATGTTTTCCAAGAGGGTTTGCATGGGAAGTCATAGAGGTTTATTCTCCTCCTCCTTTGATTGCCTACAAATTTAGGCATTGGGGTTTCTTTGAAGGACCTTACAAATCCCATTCCCCAACCGGCGAAATGGTCGAATTCTTCGGCATGGGAATTCTCAAGGTGGATTCATCATGGAAGATTGAAGAAGGTCATGTGTTCTTTGATCCAGCTGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACAGCTGATTCGTCTGCCTCTGCCTGTCCACTCTTTGATCAGCTGAAGTAGTTCCACAAACACTGAAATGAATAAAAATGTGTGTCTCAGACATTCACACCACTATCCATTAGTTCTAATCTTGTTTGTTTGTAGTTCTTACGTTGTTGTTATGTTTGTTCGTTGTATCGTTTATGTCGGTGTCTATTAAATATGAATGATAATAAGTGTGGTTTGCATATGATATTAAGTCGGAGCGGTCTTT

Coding sequence (CDS)

ATGAGCTGTGAGGAAGGCATTATGGGTGGTGATAAGTACAGAGCTTCGTTGCATTTGGAGGGTCCTACAGTTGAATGGAGGATGGGAAAGCCCCCAAATTATGAAGCTGTGAACAAGCTGTTTGAAGATGGAAGAACAAAGGTGTGGCCAAAAGGATCTGTGGAAGAACAAGTGCAGAATATTATAAAATCATTGCAAATGGAGTTTGCTTACAAGACTAGACCACAAGATTTCAAGAACATAAACCTTCACAATTTCTTATGTTCTATCAATGGAAGAACAGTCTCATGTGAAGAAGCATTGAAGCTTGGAAGCTTCAACACATTTATGAAGAATCCTTTACCACAGGAATTCCATTACTTCAAACCACAAGAAGAGACATCTGAGTCGACTCATAATGACTTCAAGACATGTTTTCCAAGAGGGTTTGCATGGGAAGTCATAGAGGTTTATTCTCCTCCTCCTTTGATTGCCTACAAATTTAGGCATTGGGGTTTCTTTGAAGGACCTTACAAATCCCATTCCCCAACCGGCGAAATGGTCGAATTCTTCGGCATGGGAATTCTCAAGGTGGATTCATCATGGAAGATTGAAGAAGGTCATGTGTTCTTTGATCCAGCTGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACAGCTGATTCGTCTGCCTCTGCCTGTCCACTCTTTGATCAGCTGAAGTAG

Protein sequence

MSCEEGIMGGDKYRASLHLEGPTVEWRMGKPPNYEAVNKLFEDGRTKVWPKGSVEEQVQNIIKSLQMEFAYKTRPQDFKNINLHNFLCSINGRTVSCEEALKLGSFNTFMKNPLPQEFHYFKPQEETSESTHNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFGMGILKVDSSWKIEEGHVFFDPAELFGGLLKGKKTADSSASACPLFDQLK

Homology

[Close]

BLAST of CmaCh16G004370 vs. ExPASy Swiss-Prot
Match: P16273 (Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 109/233 (46.78%), Postives = 149/233 (63.95%), Query Frame = 0


Query: 1   MSCEEGIMGGDKYRASLHLEG-PTVEWRMGKPPNYEAVNKLFEDGRTKVWPKGSVEEQVQ 60
           M+  EG  GGDKYR+ LH +G     WR G PPNY+ VNKLFE+ RTK W +GSVEE+VQ
Sbjct: 1   MASAEG--GGDKYRSFLHGDGEKKTVWRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQ 60

Query: 61  NIIKSLQMEFAYKTRPQDFKNINLHNFLCSING-RTVSCEEALKLGSFNTFMKNPLPQEF 120
            ++K+ +ME  +K RP+D K++NL N+  S NG + ++ EE + +G +N F+   LP E 
Sbjct: 61  RLLKTWEMEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPEH 120

Query: 121 HYFKPQEETSESTHNDFKTCFPRGFAWEVIEVYSPP--PLIAYKFRHWGFFEGPYKSHSP 180
             + P+ E+ ES  + F T FPRGFA EV++VYS P  P IA+KFRHWG+ EGP+K H P
Sbjct: 121 RIYDPEAESVESATSTFLTAFPRGFAIEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHPP 180

Query: 181 TGEMVEFFGMGILKVDSSWKIEEGHVFFDPAELFGGLLKGKKTADSSASACPL 230
            G  VEFFG+ +  VD   K+E+   F++        L     A +SAS CP+
Sbjct: 181 HGGRVEFFGVCVFHVDEDTKVEKAEFFYERGNFLASFLTA-PAASASASGCPV 230

[Close]

BLAST of CmaCh16G004370 vs. TAIR 10
Match: AT1G78780.2 (pathogenesis-related family protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.5e-74
Identity = 126/218 (57.80%), Postives = 166/218 (76.15%), Query Frame = 0


Query: 11  DKYRASLHLEGPTVEWRMGKPPNYEAVNKLFEDGRTKVWPKGSVEEQVQNIIKSLQMEFA 70
           DKYR+ L   G  V+WR   PP++ +VN+LFE+G+TKVWP+GS+EE VQN IKS +MEF+
Sbjct: 8   DKYRSVLEDAG-QVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEMEFS 67

Query: 71  YKTRPQDFKNINLHNFLCSINGRT-VSCEEALKLGSFNTFMKNPLPQEFHYFKPQEETSE 130
           +K R QDFK IN   F   +NGR  +S EE L+LGS+N  +KN LP+EF Y+KP+EE+ E
Sbjct: 68  HKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFE 127

Query: 131 STHNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFGMGIL 190
           S+H+ F++  PRGFAWE++ VYS PP+IA+KFRHWG+FEG +K H+PTGEMV+F G+G+L
Sbjct: 128 SSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVL 187

Query: 191 KVDSSWKIEEGHVFFDPAELFGGLLKG-----KKTADS 223
           KVD S + EE  +++DP ELFGGLLKG      KT DS
Sbjct: 188 KVDESLRAEEIEIYYDPGELFGGLLKGPPISETKTTDS 224

[Close]

BLAST of CmaCh16G004370 vs. TAIR 10
Match: AT1G78780.4 (pathogenesis-related family protein )

HSP 1 Score: 273.9 bits (699), Expect = 1.2e-73
Identity = 125/217 (57.60%), Postives = 165/217 (76.04%), Query Frame = 0


Query: 11  DKYRASLHLEGPTVEWRMGKPPNYEAVNKLFEDGRTKVWPKGSVEEQVQNIIKSLQMEFA 70
           DKYR+ L   G  V+WR   PP++ +VN+LFE+G+TKVWP+GS+EE VQN IKS +MEF+
Sbjct: 8   DKYRSVLEDAG-QVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEMEFS 67

Query: 71  YKTRPQDFKNINLHNFLCSINGRTVSCEEALKLGSFNTFMKNPLPQEFHYFKPQEETSES 130
           +K R QDFK IN   F   +NG  +S EE L+LGS+N  +KN LP+EF Y+KP+EE+ ES
Sbjct: 68  HKIRLQDFKTINPEKFKLFVNG--LSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFES 127

Query: 131 THNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFGMGILK 190
           +H+ F++  PRGFAWE++ VYS PP+IA+KFRHWG+FEG +K H+PTGEMV+F G+G+LK
Sbjct: 128 SHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVLK 187

Query: 191 VDSSWKIEEGHVFFDPAELFGGLLKG-----KKTADS 223
           VD S + EE  +++DP ELFGGLLKG      KT DS
Sbjct: 188 VDESLRAEEIEIYYDPGELFGGLLKGPPISETKTTDS 221

[Close]

BLAST of CmaCh16G004370 vs. TAIR 10
Match: AT1G78780.1 (pathogenesis-related family protein )

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-54
Identity = 94/162 (58.02%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 67  MEFAYKTRPQDFKNINLHNFLCSINGRT-VSCEEALKLGSFNTFMKNPLPQEFHYFKPQE 126
           MEF++K R QDFK IN   F   +NGR  +S EE L+LGS+N  +KN LP+EF Y+KP+E
Sbjct: 1   MEFSHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEE 60

Query: 127 ETSESTHNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFG 186
           E+ ES+H+ F++  PRGFAWE++ VYS PP+IA+KFRHWG+FEG +K H+PTGEMV+F G
Sbjct: 61  ESFESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLG 120

Query: 187 MGILKVDSSWKIEEGHVFFDPAELFGGLLKG-----KKTADS 223
           +G+LKVD S + EE  +++DP ELFGGLLKG      KT DS
Sbjct: 121 LGVLKVDESLRAEEIEIYYDPGELFGGLLKGPPISETKTTDS 162

[Close]

BLAST of CmaCh16G004370 vs. TAIR 10
Match: AT1G78780.3 (pathogenesis-related family protein )

HSP 1 Score: 209.1 bits (531), Expect = 3.7e-54
Identity = 94/162 (58.02%), Postives = 123/162 (75.93%), Query Frame = 0


Query: 67  MEFAYKTRPQDFKNINLHNFLCSINGRT-VSCEEALKLGSFNTFMKNPLPQEFHYFKPQE 126
           MEF++K R QDFK IN   F   +NGR  +S EE L+LGS+N  +KN LP+EF Y+KP+E
Sbjct: 1   MEFSHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEE 60

Query: 127 ETSESTHNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFG 186
           E+ ES+H+ F++  PRGFAWE++ VYS PP+IA+KFRHWG+FEG +K H+PTGEMV+F G
Sbjct: 61  ESFESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLG 120

Query: 187 MGILKVDSSWKIEEGHVFFDPAELFGGLLKG-----KKTADS 223
           +G+LKVD S + EE  +++DP ELFGGLLKG      KT DS
Sbjct: 121 LGVLKVDESLRAEEIEIYYDPGELFGGLLKGPPISETKTTDS 162

The following BLAST results are available for this feature:

BLAST of CmaCh16G004370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P16273	2.7e-57	46.78	Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2	[more]

BLAST of CmaCh16G004370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78780.2	2.5e-74	57.80	pathogenesis-related family protein	[more]
AT1G78780.4	1.2e-73	57.60	pathogenesis-related family protein	[more]
AT1G78780.1	3.7e-54	58.02	pathogenesis-related family protein	[more]
AT1G78780.3	3.7e-54	58.02	pathogenesis-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 116..214 e-value: 3.2E-6 score: 29.0
None	No IPR available	PANTHER	PTHR31723	PATHOGENESIS-RELATED FAMILY PROTEIN	coord: 8..231
None	No IPR available	PANTHER	PTHR31723:SF10	PATHOGEN-RELATED PROTEIN-LIKE	coord: 8..231
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 132..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004370.1	CmaCh16G004370.1	mRNA