CmaCh16G004360 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G004360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionpathogen-related protein-like
LocationCma_Chr16: 2174892 .. 2175944 (-)
RNA-Seq ExpressionCmaCh16G004360
SyntenyCmaCh16G004360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCATTAAGATGAGCACTGATGAAGCCATTATGGGAGCTGATAAGTACAGAGTTTTCTTGCATTTGGAGGCCCCTACGGTTCAGTGGAAGCGGGGGCGCCCAAGTTATGAGGCTGTTAACAAGCTCTTTGAAGATGGAAGAACAAAGGTTGTTTCTTTTACTCTCCCTTTCATCAACTCATCTCTGTTGCTTGATTTATTTTGTTGGTGGTAGGTGTGGCCCAAAGGATCTGTGGAAGAAAAAGTGCAGAATATGGTAAAAACATTGCAAATGGAGTTTGCTAACAAGGCTAGATTACAGGATTTCAAGATCATAAACCCTCAGAAATTCCACGTTTTTGTCAATGGTAAGTTCTTTGTGTTCTTACTTATGATTGTAATCAATTTAGGTTAATTTCATGTCTCTCTGGAAGTGCAGGAAGAGAGGGAGTCTCAGGTGAAGAAGCAGTGAAGCTTGGAGTCTTTAATGTATTGCTCAAGAACTCTCTACCAGAGGAATATCATTACTTCAAAGCACAGGAAGAGACATTTGAATCAACTTGTAATGACTTTAAGACATGTTTTCCAAGAGGGTTTGCATGGGAACTTCTTCAGGTTTATTCTCCTCCTCCTTTGATTGCTTACAAGTTTAGGCATTGGGGATTCCTTGAAGGACCTTACAAAACCCATTCCCCAACTGGTGAAATGGTCGAATTCTACGGCATGGGAACTCTCAAGGTAAAGTCGACATTCTGTGCCTTTATGCGTATTTAACATCGGGTTTATGAATGTTCGGGTCAATTTGTACTCTCATCCACTAATCTAAATCAAAGTTTTGATGTCCTAAATCCCTTCATTCTTATCTTTTCACCAGCTTCATGTTATATAATCTTGTATAATAGTGATATTTGCGCAGGTAGATTCATCAATGAGGATTGAAGAAGCTCATTTCTTCTATGATCCAGCAGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACTGCTACTGAATCAAAAGCTGTTGATTCATCTCCCTCTAGTTGCCCATTCTCCAACCTCCAGAACTAA

mRNA sequence

ATGGAATCCATTAAGATGAGCACTGATGAAGCCATTATGGGAGCTGATAAGTACAGAGTTTTCTTGCATTTGGAGGCCCCTACGGTTCAGTGGAAGCGGGGGCGCCCAAGTTATGAGGCTGTTAACAAGCTCTTTGAAGATGGAAGAACAAAGGTGTGGCCCAAAGGATCTGTGGAAGAAAAAGTGCAGAATATGGTAAAAACATTGCAAATGGAGTTTGCTAACAAGGCTAGATTACAGGATTTCAAGATCATAAACCCTCAGAAATTCCACGTTTTTGTCAATGGAAGAGAGGGAGTCTCAGGTGAAGAAGCAGTGAAGCTTGGAGTCTTTAATGTATTGCTCAAGAACTCTCTACCAGAGGAATATCATTACTTCAAAGCACAGGAAGAGACATTTGAATCAACTTGTAATGACTTTAAGACATGTTTTCCAAGAGGGTTTGCATGGGAACTTCTTCAGGTTTATTCTCCTCCTCCTTTGATTGCTTACAAGTTTAGGCATTGGGGATTCCTTGAAGGACCTTACAAAACCCATTCCCCAACTGGTGAAATGGTCGAATTCTACGGCATGGGAACTCTCAAGGTAGATTCATCAATGAGGATTGAAGAAGCTCATTTCTTCTATGATCCAGCAGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACTGCTACTGAATCAAAAGCTGTTGATTCATCTCCCTCTAGTTGCCCATTCTCCAACCTCCAGAACTAA

Coding sequence (CDS)

ATGGAATCCATTAAGATGAGCACTGATGAAGCCATTATGGGAGCTGATAAGTACAGAGTTTTCTTGCATTTGGAGGCCCCTACGGTTCAGTGGAAGCGGGGGCGCCCAAGTTATGAGGCTGTTAACAAGCTCTTTGAAGATGGAAGAACAAAGGTGTGGCCCAAAGGATCTGTGGAAGAAAAAGTGCAGAATATGGTAAAAACATTGCAAATGGAGTTTGCTAACAAGGCTAGATTACAGGATTTCAAGATCATAAACCCTCAGAAATTCCACGTTTTTGTCAATGGAAGAGAGGGAGTCTCAGGTGAAGAAGCAGTGAAGCTTGGAGTCTTTAATGTATTGCTCAAGAACTCTCTACCAGAGGAATATCATTACTTCAAAGCACAGGAAGAGACATTTGAATCAACTTGTAATGACTTTAAGACATGTTTTCCAAGAGGGTTTGCATGGGAACTTCTTCAGGTTTATTCTCCTCCTCCTTTGATTGCTTACAAGTTTAGGCATTGGGGATTCCTTGAAGGACCTTACAAAACCCATTCCCCAACTGGTGAAATGGTCGAATTCTACGGCATGGGAACTCTCAAGGTAGATTCATCAATGAGGATTGAAGAAGCTCATTTCTTCTATGATCCAGCAGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACTGCTACTGAATCAAAAGCTGTTGATTCATCTCCCTCTAGTTGCCCATTCTCCAACCTCCAGAACTAA

Protein sequence

MESIKMSTDEAIMGADKYRVFLHLEAPTVQWKRGRPSYEAVNKLFEDGRTKVWPKGSVEEKVQNMVKTLQMEFANKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQEETFESTCNDFKTCFPRGFAWELLQVYSPPPLIAYKFRHWGFLEGPYKTHSPTGEMVEFYGMGTLKVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPSSCPFSNLQN
Homology
BLAST of CmaCh16G004360 vs. ExPASy Swiss-Prot
Match: P16273 (Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 1.6e-49
Identity = 102/231 (44.16%), Postives = 140/231 (60.61%), Query Frame = 0

Query: 14  GADKYRVFLH--LEAPTVQWKRGR-PSYEAVNKLFEDGRTKVWPKGSVEEKVQNMVKTLQ 73
           G DKYR FLH   E  TV W+ G  P+Y+ VNKLFE+ RTK W +GSVEEKVQ ++KT +
Sbjct: 7   GGDKYRSFLHGDGEKKTV-WRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRLLKTWE 66

Query: 74  MEFANKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQE 133
           ME  +K R +D K +N + +    NG + ++ EE + +G +N  L  +LP E+  +  + 
Sbjct: 67  MEMVHKVRPEDQKSVNLKNYSASTNGLKPLTREEVMAMGGYNAFLATTLPPEHRIYDPEA 126

Query: 134 ETFESTCNDFKTCFPRGFAWELLQVYSPP--PLIAYKFRHWGFLEGPYKTHSPTGEMVEF 193
           E+ ES  + F T FPRGFA E+L VYS P  P IA+KFRHWG++EGP+K H P G  VEF
Sbjct: 127 ESVESATSTFLTAFPRGFAIEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHPPHGGRVEF 186

Query: 194 YGMGTLKVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPSSCP 240
           +G+    VD   ++E+A FFY+        L        + A  +S S CP
Sbjct: 187 FGVCVFHVDEDTKVEKAEFFYERGNFLASFL-------TAPAASASASGCP 229

BLAST of CmaCh16G004360 vs. TAIR 10
Match: AT1G78780.2 (pathogenesis-related family protein )

HSP 1 Score: 289.3 bits (739), Expect = 3.0e-78
Identity = 136/233 (58.37%), Postives = 179/233 (76.82%), Query Frame = 0

Query: 16  DKYRVFLHLEAPTVQWKRGR-PSYEAVNKLFEDGRTKVWPKGSVEEKVQNMVKTLQMEFA 75
           DKYR  L  +A  VQW+    P + +VN+LFE+G+TKVWP+GS+EE VQN +K+ +MEF+
Sbjct: 8   DKYRSVLE-DAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEMEFS 67

Query: 76  NKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQEETFE 135
           +K RLQDFK INP+KF +FVNGREG+S EE ++LG +N LLKNSLPEE+ Y+K +EE+FE
Sbjct: 68  HKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFE 127

Query: 136 STCNDFKTCFPRGFAWELLQVYSPPPLIAYKFRHWGFLEGPYKTHSPTGEMVEFYGMGTL 195
           S+ + F++  PRGFAWE+L VYS PP+IA+KFRHWG+ EG +K H+PTGEMV+F G+G L
Sbjct: 128 SSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVL 187

Query: 196 KVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPS-----SCPFSN 243
           KVD S+R EE   +YDP ELFGGLLKG    +E+K  DS  +     SCPF++
Sbjct: 188 KVDESLRAEEIEIYYDPGELFGGLLKG-PPISETKTTDSGDNTAEKQSCPFTH 238

BLAST of CmaCh16G004360 vs. TAIR 10
Match: AT1G78780.4 (pathogenesis-related family protein )

HSP 1 Score: 277.7 bits (709), Expect = 8.9e-75
Identity = 133/233 (57.08%), Postives = 176/233 (75.54%), Query Frame = 0

Query: 16  DKYRVFLHLEAPTVQWKRGR-PSYEAVNKLFEDGRTKVWPKGSVEEKVQNMVKTLQMEFA 75
           DKYR  L  +A  VQW+    P + +VN+LFE+G+TKVWP+GS+EE VQN +K+ +MEF+
Sbjct: 8   DKYRSVLE-DAGQVQWRYDNPPDFNSVNQLFEEGQTKVWPEGSLEETVQNAIKSWEMEFS 67

Query: 76  NKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQEETFE 135
           +K RLQDFK INP+KF +FVN   G+S EE ++LG +N LLKNSLPEE+ Y+K +EE+FE
Sbjct: 68  HKIRLQDFKTINPEKFKLFVN---GLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFE 127

Query: 136 STCNDFKTCFPRGFAWELLQVYSPPPLIAYKFRHWGFLEGPYKTHSPTGEMVEFYGMGTL 195
           S+ + F++  PRGFAWE+L VYS PP+IA+KFRHWG+ EG +K H+PTGEMV+F G+G L
Sbjct: 128 SSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLGLGVL 187

Query: 196 KVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPS-----SCPFSN 243
           KVD S+R EE   +YDP ELFGGLLKG    +E+K  DS  +     SCPF++
Sbjct: 188 KVDESLRAEEIEIYYDPGELFGGLLKG-PPISETKTTDSGDNTAEKQSCPFTH 235

BLAST of CmaCh16G004360 vs. TAIR 10
Match: AT1G78780.1 (pathogenesis-related family protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-61
Identity = 107/177 (60.45%), Postives = 138/177 (77.97%), Query Frame = 0

Query: 71  MEFANKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQE 130
           MEF++K RLQDFK INP+KF +FVNGREG+S EE ++LG +N LLKNSLPEE+ Y+K +E
Sbjct: 1   MEFSHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEE 60

Query: 131 ETFESTCNDFKTCFPRGFAWELLQVYSPPPLIAYKFRHWGFLEGPYKTHSPTGEMVEFYG 190
           E+FES+ + F++  PRGFAWE+L VYS PP+IA+KFRHWG+ EG +K H+PTGEMV+F G
Sbjct: 61  ESFESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLG 120

Query: 191 MGTLKVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPS-----SCPFSN 243
           +G LKVD S+R EE   +YDP ELFGGLLKG    +E+K  DS  +     SCPF++
Sbjct: 121 LGVLKVDESLRAEEIEIYYDPGELFGGLLKG-PPISETKTTDSGDNTAEKQSCPFTH 176

BLAST of CmaCh16G004360 vs. TAIR 10
Match: AT1G78780.3 (pathogenesis-related family protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.9e-61
Identity = 107/177 (60.45%), Postives = 138/177 (77.97%), Query Frame = 0

Query: 71  MEFANKARLQDFKIINPQKFHVFVNGREGVSGEEAVKLGVFNVLLKNSLPEEYHYFKAQE 130
           MEF++K RLQDFK INP+KF +FVNGREG+S EE ++LG +N LLKNSLPEE+ Y+K +E
Sbjct: 1   MEFSHKIRLQDFKTINPEKFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEE 60

Query: 131 ETFESTCNDFKTCFPRGFAWELLQVYSPPPLIAYKFRHWGFLEGPYKTHSPTGEMVEFYG 190
           E+FES+ + F++  PRGFAWE+L VYS PP+IA+KFRHWG+ EG +K H+PTGEMV+F G
Sbjct: 61  ESFESSHDAFRSALPRGFAWEILSVYSGPPVIAFKFRHWGYFEGTFKGHAPTGEMVQFLG 120

Query: 191 MGTLKVDSSMRIEEAHFFYDPAELFGGLLKGKKTATESKAVDSSPS-----SCPFSN 243
           +G LKVD S+R EE   +YDP ELFGGLLKG    +E+K  DS  +     SCPF++
Sbjct: 121 LGVLKVDESLRAEEIEIYYDPGELFGGLLKG-PPISETKTTDSGDNTAEKQSCPFTH 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P162731.6e-4944.16Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
AT1G78780.23.0e-7858.37pathogenesis-related family protein [more]
AT1G78780.48.9e-7557.08pathogenesis-related family protein [more]
AT1G78780.11.9e-6160.45pathogenesis-related family protein [more]
AT1G78780.31.9e-6160.45pathogenesis-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31723:SF10PATHOGEN-RELATED PROTEIN-LIKEcoord: 13..241
NoneNo IPR availablePANTHERPTHR31723PATHOGENESIS-RELATED FAMILY PROTEINcoord: 13..241
IPR032710NTF2-like domain superfamilySUPERFAMILY54427NTF2-likecoord: 134..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G004360.1CmaCh16G004360.1mRNA