CmaCh16G004340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G004340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ras-related protein RABA1b-like
Location	Cma_Chr16: 2165009 .. 2170144 (+)
RNA-Seq Expression	CmaCh16G004340
Synteny	CmaCh16G004340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACGCACTTCCTCCCACTTGATTTTCTCTCTCTCTCTCTCTGGTTCGATTCTTCTTCTTCTTCCTCGTAAAGTTTGAAGTAAATCGAAGCAACAATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAAGGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTTTTCTTTCTTCTCTCATCTTGATTTATCTTCGTTTCTTGCAATCTCCTTGGTTTTCCTTCCTTTGCTTTCTGTCTGAGTTGTTTCTTGGCGCTTTGGATTATGGTTGCTGCTTACTGTCTTCTGTGTTGGTTGAGTGTTTTGGTTTCTGAGTTTGGTTAATTAGCATGTTCTGGTTCGCCGAGCGGGCTGTAATAACCTAGATCTGTTTGATGGGAGGTGTTTTCTTATCAAGCTTGTGTTCTTATGGTTCAACCGAGTGTTTTATTGCTTTCGAAGTTGGTTCTGATGTCTTCTTACTGCGATATGTTAAGGCTTTGTTCTTCAACTTTCATGGTTGGAAGGGTAATAACGCTGGTTGATGATGGCTAAAAAAGCTTAGATTCAGAAGGCATTGAAGAATTCATTGATTAGATGTTAGTGAAGTAGTTGGGACTCGGTATTGCCTGAGCGGACTCTTGTTGAGGAAGATAATGGCTTCTGTTTCGCAGATCGTGTGCTCTCCTGAGCCATTTCATTTTCAAATATCTTATAATTTGAATTAGCAACAGAAAGTTTTGATTCTTCCAATTATTCTTTCCCCTGTCTCCCGAGAAAGTATAAAGGTATCTGGCTTCCTTCTACAGGAATTCGTCTCCTGTTTTCCATGGGGGATATATTGAAATTCTCTTTCATGCATTGTAGCTCCTCAACCTTTTGATTTGTTTCTCAAAATATCTCCTGGAGGAAAAAAAAAAAAAAAGAAAAAGAAAAAATTATTTCAATGAAATTTCTATTCTGGGTTAGCAGGATCATTGAACACAATAATGACTTAGAAGTAGTTTAGAGTCTCTTTCTAACAAGAGAAACTATGCCATCTGCTGGATTTCTTAGTATGTGTGAAACTTTTGTGTAACTGTCCAAACCCATCGCTAGTAGATACTATCCACTTTTGTCAGTTACGTATTGCCGTCAGCCTCACGGTTTTAAAATGTGTCTGCTAAGGAGAAGTTTTCACAGGGAATGCTACATTTCCCTCTCCAACCGATGGAATCTTGAGCTGTTACATTTTTCTCATAGTTTCTTGGGCTTACTATTCTCTCTCGAACTCAATGACACCATGGTACAACCCTAAAGAACAGATCTTGTTCTAGTAAGGTCGTCGCTCCTAGTCACTTTATTATGAACTTTTCTTGGTTTTGTCTAATTAGCCCAATCTCTCATAAAAACTGAAGCTTCTATGATGGATTGCCTAGAAGATATAAAGGTGCCACTGCCCCCTTCCACAAAATAAGCATCTGACAAAGGAAATGAAATGATCTGCAATTCTTGATGTGTTTTCCAACTCTCGATTAACTATGATTTTACTATTTGTTTTTGTTATACCTTTAATGATGCTCATGGATGTTGATTAGTAGATTGAAACTTTTTTTCTAATAGTTAATAAGATGGCTTCATCATTCATCAATAAGATTCTGGTAGACTGATTGTGCGAGATCTCTCAAGTTTTCTTTAAATTAAATGAGCTGTTCAGATCTACATGGGTTCTGTGTCTATAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGGGCAGTCGGTGCACTCCTTGTATATGATGTCACTCGTCATGCAACATTCGAGAACGTCGATCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCTGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTTGAAGGCGGAGAAAATGGCTCTGCTACCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAACTTTGGTAATCTGCCTAGATGATTTTCGATTTCATGTAATGTAATATATTTTTTCCTTGAAGATGGTTATGAAGAAAAAGGAAGATACATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCCACATGATTGGTTCGTGGTTGCTGTTGTGTCATTATTAGCATCTTGGTTTCAAGTTTCCATGGAAAATGTCCACCATTTTAGCCTCTACTACCCCTTTGATCTGTATAAGCATTCATGATGTCCTATGATGATAAATGATGTTGATGAACTCTCATATTCATTCATATGTTGTTCAAGTCAGTTATGATGGCTCTTTGAGCTGTGAACCTATATTACTTTTTAGCCTATCTATTTCGGTAAAAAATTATCATTTTGGTCCCTTTTACTTTGATTTGTATCCTATTATTTTTGTTATTATTCCCATTACATTTCATAAATCTTTAAATTTAGTCGATGCCATTAGGAGTGTAGGGAGAGCCCGTTATGCCTTGTTTTTGTTTGACCAGCCTATCCTCTTTCGAGAAGGAAGCTCCCTCCGGTTGTCCAGTTCCTAAGCGGCTCTCGATTTTTTAGCATGTTGGGAGATTAGGTGACAGTTTCAAAACTTGAAAGCTTGATGAACATGCAAATCAAGCCCGTTTTCATTTATTTGGAACCTTTATTTTCTGACGTGAAATTATTATTATTTAATTTAACTTTGGTATAATACTAAATTTAAATAATTGAAAGTATATTAAGTAGAATGTAATTCAAAATTTATTTATAAGATAAAAGATTGAATTAGAAATAAAATAATCTAATATAACATTACCAATTTTTAAATCTCATTCACAAGGTGAGATTTAAAATAAAAATAAAATAATTAATTTTGTTATTATTATTATTTAGAAATTGTCATAAATGTAGTATTTTTTTTTTTTTTTTTTTTAATAATAAACTTGTGAATTGAAGTTCAGAGCCCATTATAAGCCCAACTAGAAACCACATGCGCATAAACACAGACACACACGGCCTCCCGCCCAATTTTGTTCTCTTCAATTTTCCCTCTCGATTTCAGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCAATTCTCTACTGTTCGACAAATCTCACTTCTTTTGAGCTATCAAAATCCATGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACATTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGCTACCTTGCTGCCAAGTGTCTCGTAAGCTTACTTGGAACTTCACTGTTTATCTGTGTTTTTTTTTTCTCTGTTGATTTTAGACCTCCTGTGTTTTTTCGTATGGATTTTGATTTGATGTGTTAGGGGTTTTTCTTGTGAATTCTGTTTATGATGTTGTGGGTCTCTGAACGCGGCTGTGTTTGTGTGGGAATAGCGGGAATTGGATCAGTTGTTTGCAGTAGGAAAATTTGATTACCGGAAATTCAGTTTCTTCAGAGATGAGGAACACAGGATAAGACATTTTGGGCATGTAGTCAGATCTTCTGTTTTTAATAAATGTCATTCGTTTATAAATCTTTGATTGGCCAGGAGGAATTGAAGGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATGTACTGTTATGTTACATCATATCAACTTATTTTAAAAGAACACCCTCGGTTTAAGACTTTCAGGATGGTTAGATCATTAGTTTCACAATGGGATTCTCTGTTTTCCTACCTTGTAACAGATAGCCGCAGCTACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGCACTCAGGCTCGACTTTGGTGAGTTTATGAACACATTTTTACCTCCATGAGCGCCTTAACCAGAACCTACAGAGTTATTAAACTGTGAAACTTCAAATTAATGAATGATGTCATTTATTTATTATGATTTTTTGAAAATGGTGTTTAGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGTAAATATGTTTCTTTGCCGAACTTTGGTATTGCTGAACGTATTCAGCTTAGCGTACTGTTACCATTCTTGTATGTCATAGTTTTAGAAGCTGAAAATTAGTGTTCCTGTTTAGTTAATGACTTGTCCTTTTTCAAAGATCAGGCAACAAAATCTCTCCTTCCTTTTTTGGTGTAGCCATTAATTTGTAAGAGAAACGTAACTTTTTTATTTATGTTTTGGTTTCATTCTTTTAATAGATACCATTTTTATGTCCATTTTTGTCCAGGCTTTGGAGTGCCTAATAGAAAGTCACATGCTGACTTGTGATGAAGGTAAACCTCAATACTACGCATTTAACGTTTTAAAAAGCTATTGAGGTTTATGCCCTCTGGCAATATTCTAACGTTTAGCCTCGAGACTTGCGTCTTCGTTGAACCATAAGAGGCTTACACCTTGTTAAAAACACACTGAAGCTTACACCTTGTGAACTTTTTGATATTTATATGTATTCTGTCAATTTTTCATTGATGAAATATTTAACTTATCATTTATTTTTCAATCTCGCCCCCGTCTTTCGTCAGGATTATTAATAATCTACTTTTATATGATGTGAAATTTCAGAA

mRNA sequence

TTCACGCACTTCCTCCCACTTGATTTTCTCTCTCTCTCTCTCTGGTTCGATTCTTCTTCTTCTTCCTCGTAAAGTTTGAAGTAAATCGAAGCAACAATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAAGGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGGGCAGTCGGTGCACTCCTTGTATATGATGTCACTCGTCATGCAACATTCGAGAACGTCGATCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCTGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTTGAAGGCGGAGAAAATGGCTCTGCTACCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATATGGTTATGAAGAAAAAGGAAGATACATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCCACATGATTGACACACACGGCCTCCCGCCCAATTTTGTTCTCTTCAATTTTCCCTCTCGATTTCAGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCAATTCTCTACTGTTCGACAAATCTCACTTCTTTTGAGCTATCAAAATCCATGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACATTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGCTACCTTGCTGCCAAGTGTCTCGAGGAATTGAAGGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATATAGCCGCAGCTACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGCACTCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGTAAATATGTTTCTTTGCCGAACTTTGGTATTGCTGAACGTATTCAGCTTAGCGTACTGTTACCATTCTTAA

Coding sequence (CDS)

ATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAAGGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGGGCAGTCGGTGCACTCCTTGTATATGATGTCACTCGTCATGCAACATTCGAGAACGTCGATCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCTGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTTGAAGGCGGAGAAAATGGCTCTGCTACCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATATGGTTATGAAGAAAAAGGAAGATACATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCCACATGATTGACACACACGGCCTCCCGCCCAATTTTGTTCTCTTCAATTTTCCCTCTCGATTTCAGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCAATTCTCTACTGTTCGACAAATCTCACTTCTTTTGAGCTATCAAAATCCATGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACATTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGCTACCTTGCTGCCAAGTGTCTCGAGGAATTGAAGGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATATAGCCGCAGCTACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGCACTCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGTAAATATGTTTCTTTGCCGAACTTTGGTATTGCTGAACGTATTCAGCTTAGCGTACTGTTACCATTCTTAA

Protein sequence

MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSATSVPAQGEKINIKDESGLNRIKYGYEEKGRYIYIPKTFNLAALQKEEYLSHMIDTHGLPPNFVLFNFPSRFQTVETPSEELGVSILYCSTNLTSFELSKSMRMREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEELKEWDQCLMMLGDAKVDEHGNVLDNKDHSGMYLDKDSEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEVNMFLCRTLVLLNVFSLAYCYHS

Homology

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BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 3.0e-95
Identity = 184/213 (86.38%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVD K
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFENVDRWLKELKNHTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHL+AVPTEDGKSYAE+ESL F+ETSALEA NVE AFAEVLTQIY I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIK-DESGLNRI 213
           K VE GE+G+A SVP +GEKI +K D S L ++
Sbjct: 181 KQVEAGEDGNA-SVP-KGEKIEVKNDVSALKKL 211

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BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.1e-94
Identity = 170/209 (81.34%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           M GYR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+TL VD+K
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFEN  RWLKEL++HTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNKSDLRHLVAVPTEDGKS+AE+ESLYF+ETSALEA NVE AF EVLTQIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIKDESGL 210
           +AVE G++GS++ +P++G+ IN+K++S +
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSV 209

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BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.1e-92
Identity = 171/215 (79.53%), Postives = 191/215 (88.84%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++L +D+K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENV RWLKEL++HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNKSDLRHLVAV T++ K  AE+E LYF+ETSALEA NVE AF E LTQIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIKDESGLNRIKYG 216
           KAVE G+ G+ +S P +GE INIKDE G +  K+G
Sbjct: 181 KAVEAGDEGATSSAPPKGETINIKDE-GSSWKKFG 214

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BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.0e-92
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+L VD K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+ WLKEL+NHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AEKESLYF+ETSALEA NVE AFAEVLTQI+HIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINI-KDESGLNR 212
           KA+E      + +VP++G+KI+I KD S + +
Sbjct: 181 KAMEAA--SESANVPSKGDKIDIGKDVSAVKK 210

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BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot
Match: P40393 (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 6.9e-92
Identity = 170/205 (82.93%), Postives = 193/205 (94.15%), Query Frame = 0


Query: 2   AGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSKV 61
           AGYRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+L+VD KV
Sbjct: 3   AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKV 62

Query: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVV 121
           +KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+RWLKEL++HTD NIVV
Sbjct: 63  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVV 122

Query: 122 MLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKK 181
           MLVGNKSDLRHLVAV T++GK++AE+ESLYF+ETSALE+ NVE AFAEVLTQIY IVSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182

Query: 182 AVEGGENGSATSVPAQGEKINIKDE 207
           +VE G++  A S P +GEKINIKD+
Sbjct: 183 SVEAGDD--AGSGPGKGEKINIKDD 205

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BLAST of CmaCh16G004340 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B )

HSP 1 Score: 350.5 bits (898), Expect = 2.1e-96
Identity = 184/213 (86.38%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVD K
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFENVDRWLKELKNHTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHL+AVPTEDGKSYAE+ESL F+ETSALEA NVE AFAEVLTQIY I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIK-DESGLNRI 213
           K VE GE+G+A SVP +GEKI +K D S L ++
Sbjct: 181 KQVEAGEDGNA-SVP-KGEKIEVKNDVSALKKL 211

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BLAST of CmaCh16G004340 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 340.1 bits (871), Expect = 2.9e-93
Identity = 175/212 (82.55%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+L VD K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+ WLKEL+NHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AEKESLYF+ETSALEA NVE AFAEVLTQI+HIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINI-KDESGLNR 212
           KA+E      + +VP++G+KI+I KD S + +
Sbjct: 181 KAMEAA--SESANVPSKGDKIDIGKDVSAVKK 210

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BLAST of CmaCh16G004340 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D )

HSP 1 Score: 338.6 bits (867), Expect = 8.3e-93
Identity = 169/203 (83.25%), Postives = 190/203 (93.60%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+L V+ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+RWL+EL++HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AE ESLYF+ETSALE+ NVE AF+EVLTQIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINI 204
           KA+E GE+    +VP++GEKI++
Sbjct: 181 KAMEAGEDSG--NVPSKGEKIDV 201

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BLAST of CmaCh16G004340 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 327.4 bits (838), Expect = 1.9e-89
Identity = 160/209 (76.56%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MAGYRAD++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+T KV+ K
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATFEN  RWL+EL+ HTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNK DLRHLVAV TE+ K++AE+ESLYF+ETSAL+A NVE AF EVLTQI+ IVSK
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIKDESGL 210
           ++V+GG  G +  +P +GE IN+K++  +
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSV 207

[Close]

BLAST of CmaCh16G004340 vs. TAIR 10
Match: AT3G15060.1 (RAB GTPase homolog A1G )

HSP 1 Score: 312.4 bits (799), Expect = 6.4e-85
Identity = 153/213 (71.83%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60
           MA YRADDDYD+L+KVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR++ VD K
Sbjct: 1   MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           ++KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH TFENV+RWLKEL++HT++NIV
Sbjct: 61  IVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           +MLVGNK+DLRHL AV TED K++AE+E+ +F+ETSALEA+NVE AF EVL+QIY + SK
Sbjct: 121 IMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASK 180

Query: 181 KAVEGGENGSATSVPAQGEKINIKDESGLNRIK 214
           KA++ G++   T++P +G+ IN+  +  ++ +K
Sbjct: 181 KALDIGDD--HTTLP-KGQSINVGSKDDVSEVK 210

The following BLAST results are available for this feature:

BLAST of CmaCh16G004340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39222	3.0e-95	86.38	Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1	[more]
Q40194	1.1e-94	81.34	Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1	[more]
Q01111	3.1e-92	79.53	Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1	[more]
Q9FK68	4.0e-92	82.55	Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1	[more]
P40393	6.9e-92	82.93	Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 S...	[more]

BLAST of CmaCh16G004340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16920.1	2.1e-96	86.38	RAB GTPase homolog A1B	[more]
AT5G45750.1	2.9e-93	82.55	RAB GTPase homolog A1C	[more]
AT4G18800.1	8.3e-93	83.25	RAB GTPase homolog A1D	[more]
AT1G06400.1	1.9e-89	76.56	Ras-related small GTP-binding family protein	[more]
AT3G15060.1	6.4e-85	71.83	RAB GTPase homolog A1G	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 14..35 score: 55.22 coord: 152..174 score: 41.61 coord: 117..130 score: 53.64 coord: 55..77 score: 52.4 coord: 37..53 score: 36.7
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 3.3E-107 score: 372.2
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 9.8E-26 score: 101.5
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..212 e-value: 1.3E-6 score: 38.0
None	No IPR available	PFAM	PF12895	ANAPC3	coord: 312..390 e-value: 5.9E-18 score: 64.9
None	No IPR available	PANTHER	PTHR24073:SF1156	RAS-RELATED PROTEIN RABA1B	coord: 1..213
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 1..213
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..175 score: 9.664
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..226 score: 35.256985
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 2.61087E-125 score: 359.952
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..173 e-value: 2.8E-12 score: 37.4
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 2.0E-60 score: 203.1
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..277 score: 16.346403
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..207 e-value: 7.8E-70 score: 236.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 9..180
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 280..474 e-value: 1.5E-48 score: 167.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 331..471
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 1.8E-38 score: 129.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004340.1	CmaCh16G004340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0060627	regulation of vesicle-mediated transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005515	protein binding