CmaCh16G004320 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G004320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUbiquitin domain-containing protein
LocationCma_Chr16: 2151472 .. 2157962 (-)
RNA-Seq ExpressionCmaCh16G004320
SyntenyCmaCh16G004320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCTAATCTTTCCTTCTATCTGCCTGTGAATTGAAGCTTCTGTTCTAGCGAGACGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGAAGGTGAGGTTCACTTCGCTTCTGTGTTTTTTTTTTTTCTAAATTCTCGGCGAAATTTTGTTCTATGTTCGTCTGTTGACTTGGCTACTAGGAATATTAGAAGATAATCAATGCAAGTTGATTTGCTGTGGTAGGGAGAGCGGGAGTGTTGGTCTAGTAGTATTGAATTTCTCGGTAATGAATTGGATTGCTCTTGATTTTATTTATTCTGTCATAGCGTTGCCTGATGGTGTTCGTAAGTTTGTCCTGTGAGTTGTGACTGTGACAGGAGATTCTTGAACTTCACTTGCGATTATCAGATTATGTAGTGGTGCATTAATTAGGATGAGCAGCTCTCAAATTTAGATAATTGCACTAGTTCATGGAAATAGTTGTATTATTCATTCATTTTGGGAGTGACGGGTTTTTGAAGGTTGCTTAGAGTTATTGCTCACTGGTTCATTTGACATTTCATGCTGGTGATTCAAATTCCACTACAGATTTATGCTTTCAGATTAATGAAGTTATCAAGACTTGTAGTCGGAATCTTGGCATATTTGTTGCTTAACTAGTTTCGCATTCAAAGAGTTCTATTAGATTAATTGTGAAGCTGTGATGGTAGCATTCCAGGACTAAAATTTCAGCAACTAACAGTTAAATGGACAGTATCTTATATTTCTGCTTTATACTGCAATCAAAAGAAATAATAGCGTTTTTAGAGGGAGTGAGAGGGAGCTTATTGATGTTTGGTCCCTTGTGAGATTTAATGTCTCTCTTTTGGCAGCAGTTACAAGTTTTTTTTTTTTTCTTTTTGTAATAATTTTTAGAGGGATTGAGAGAGAGTCTTTTGATGATTGGTCCATTGTGAGATTTAATGTCTCTCTTTGGGTGGCGGTGACGAGTTTCTTTCGTAATAGTTTTTAGAGGGATCGAGAGGAAGTCTTTTGATGTCTGGTCCATTAAAAGATTTATGTCTCTCTTTGGGCGGCAGTGACGAGTTCCTTTTGTAATTACTCTCTTTATGGGCTTGTTTTGTGGAGAGGTGATTTTCATTTGACTCTTTTCTACATGCAAAATGTCTAAGGTAATAGTTGTACGTGAAAATTCCTCCCTTTCCCTCTTTATTCTTGTAACAAATATTACAAATGACAGGAATTGTTGATCTTCTTGTTTGTTTTTAAAGAGGAAGAAAACACTTGAGGATACTGAAATGGAAAAGAAGCACTTCAAAAGCGTAAAGAAAAGGATAGAGAAAATTGCAAAATTTTAGGACGAACTTTTGTAATTCTCCTTGTGTTGTTTATAGTTCTGAATGTCTAAGGATTTCATTTAAACTTTTCAAGACTACCATGCTGTTAGCCTTGAATCTGGTTTTGTTGGTTTATACTTGATTCAAGCCATTGAGATATCACTGAAATTGTTTCTTTATGTAGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTTTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGGTAGGCCTGTCTCTAAATATTTTTTGCCAGTGTTAAAATCTGCATGGATTATTAGAGGTTAGCTGGTCAAAAAAGTTACTAAGAGTTTATTTAGTTAGGAATAGACCTTACATTGTTGTATCATGCTACGGAGTAGCTCATGACTTTTGGTTTCAGAATCTAATTTTCCGTCTCGAGCAAAATGTAAAACTAGGGATAGATGACCATTCAATCCATGGAAAAGGTGACTACTGTAGTTGCAGGGGACCCAATAAAGGTTAGGATGAGTTATCCCTTGGAAACAACTATGGTATATTTCACAGCTATAAGAACAGTTAATCAATTTCCAGTTTCTAGGATCCTTAGATTGTTTTTCCTGTTTCCTAATGAACTAAGTTCTTCGGTTTGGAGAGACGAGGTTTCCTATTTTTATGCTGATTCCAGATTGCCATTGCCAACATCAAAGAATCTCATTTGATGTGTAGGCTTTTCCAATTGTTTCATTTTGGTTTGTGCTCAAATCAAAGGGGATGCTTTCTGGAAGAAATGTGATATAGGGAGTTTTTGGTATAATTGATTCATGTTTCTTTATTACATGGTTATTTATTAATTATGCCATGAATGTTGGCTCTTGGATGTAGACATCTTTCAAATCAATTTAAATTGCGAGTAAAGATTTATTTTGAGGACTCTTTGTGAGAGCTAAGGCGACACCAAAATGATTAACTTCTTTTTCTCAGGCTTGGAGCCATTATGTTATATACTTACCTAGGATTATGGAACGTGATTAACTAGAAGTCTTATGTCTCGACTTCACTTTTATACGTTTTTTAACCCCCTTTTTCTGTAGTCTTCTTGTTAATCTATTTACTTTCGTGGGGTTTCTTCTCCCTTTTATCTCTTTTTTAATAGTCTTTAGTATTTTTGTAAAGCTCATTGGGAATCGCCACAATTTTTTGAAGTGACCGGCCTTGTTTGAATTTCTCTTCGCCCACAATTCATTTTGCAGTCCCTTATTGATCTGTGGTTAAAGACATCAGTTCTTATTTTTCTTCAACCTTCTGCTTTCACTTCCCCCAAATGGTTTTTATTCCGTATGCTAGATATAAAGCAATGCTATTTGTAATTTAAGTCAAACTGTTTTGGCCCTAACTATGCCTTAGACTATGCTCTTGCCGTGCTTTTGTTTGATGCAAACCTTAACCTTGTATCTATATGAAGGTTTCTAATACACGGCACAAATTTCTGTTAATTTTCATTTTTCACTTTCATTAATTGACTTTAGTCGATAAGGATCTTTGGATCTAGCATTTCAAGTGCGGATTGTTTCAAAATTTGAATATTGAACTGATGTAGCATTTTGTACCAAAAATCAAATGAGAAAAAGATGATTGAACATATACGAGCCTTGCAGTAAAGCGAACACTAATATTATGAATGGGCATCTTTAGGCCATGACATACCCCTCTCCAAGTTAACATCGACTTCAACCTTTTTATACATTCCTTTTTCCTTTACGTCCTGCTTACTAAAATTTACTAACTGTTTTTTGTGGTTACCAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGCTACGACGAGAGAGGTCCATACCATTGCTTCATTTAAGAAATTACGATACGTTATTTTAGTTTAGTCATCGGTATCGTTATACCATCGCTCAATCTTACCGCAGGCACAAAATATGAACTACCCAACTATGTTTTGAGTGAGCCAACCAATTTGATTCGTGATAGTTCATAAAGAGGTAACCATAACTTCATTTCTGCTCTAGCTGAAATCACACAGGTCTGAATAATGCTTGCTTTTAAAAGGTTTCATTTTGGTCCTTGATACAAAAATACATTATTCATTCCTCTAACTTTTTCTGTAAGTTGCTTTACTCTAAATGGACAAATTGCAACATCCCTTTTCACATTTTTTTGTACAAAAAAAACCCTTCATTTCATTTGGTTTAGCAGTGTCATAAGTTACTTGATTACTTGTATAAATTAAGATTCGATCTAGAATGACTGAAAGTTTGAAAGCTCTGTGATTGATTGTCGTATAGAGAGAAGAAAAAAAAGAGCAATATTGTGGAAAAGTGCTTTCTTCATCTTTTAGTTTGAATCTTTTTTACCTGAAAGAATGGTATTTTGGTATGCTTTGTTTGAAAAAGCATTAAAAAAGAAAGCCCCTGGAGAAGGGATAGATGACCCAAATGGCGTAGAAAGTGCTTTCAACAATGCTTTTTTGGTCATTTCTACCAAGAAAAGGCTGCTCTTTATCAATCCAAATTCATTCCTTTGCTTGGCTATTGAGTTGAGTTTGATTTTGTTACTTTCACAAATAATCATGGTTGAGTAGACAAATGCATGTGGCCCTAAAGTTTTCTATTTTTTTGAGCATAAAAATTGGTCAAATTTATTATCGAATCCATCGTCCCACCCCGTCCCGCCCCGTCCCGCCCCTTTTGTTCACTATTGACCCAAGAAATTTAAAAGTTTCAATTTCATCCTTTCTACTCTTTTTTTCAGCTCAGTTCGAAGATTACAGAGTTAAAGATGGAACCATTGATTATAAATATTGATCAAAGGTTATTTGGTACTTAACATTACTCGTAGATAACCATATTTAAAATTATATATATTATATGTTTTGAGAACGAGATTCAGTGTAAAGCAAAACGGTCCACCCTCAAACAAGAAAGTCAAAGTGTTGACCAGTCTTACCCTTGGCTTTTGTTATCCTTCCCCCTTCACTCGCTATACCCTGGCGCGTCACTTCACGCACACATTTCTTCTTTTTTTTCTTTTTTTTTTCTTTGTTTGGTTAAAGATAAAAACATACCTCACTTTTTTCTATTTAAAAAATTATATTTTTTAAAGTTATAATATTTTATAATTAATTTTAGAGTATAAATAAATTAGAAAGGTGTGAAATTTATTTATTTATTTATTTATTATACGTCATTGCTATACCATTCTAATTTTAATTTTATCTCGAATTTATATTTCAATCCACATTAAATTTTATTTTATTTTTTAAAAAATTTATGAGTATTTATTAAATAATTTTTAGGAGTGTTTGTTAAATATTTTTTTAACATTTTTAATGTCTTATCTGTTAATTTCTTTATTTCACATAATTTACAAAATCAAAAGTATTAATACTTGAAGCATAGTAACCAAGTAATTGGACCTAAATTAAATGAGTACAAAATTATTTATATTATTAAAAAACGTAAAAAGAAAATTACTTTATTTTTTACAAAATAAAAAAATAAAAGTGAGGTAAGAGTGGGGCCCGATGGGGGCAGGGGCGGGACCCACAAGTGAAAGGTCGTGCTTATTGGCGTGATATGAGGGTGGGGTCACGTGAAAAAGCAGATAAAGCAAAGCCAAACACCACTCGCATCCCCATCATTATGTGCTGCTCCTTCCTACACCCAAATATATCCCAAAGCTCGACCCGACCCGAAAATCATACTCTCTCTCACGTGCGCCGAAAAAACCCGACACGTGTAGCTTCTCTATAGAGGCCGTTGAGAAACTCCACTCCACACAAGCTCCACCTGTCGAACTCTGTTTGGTTCTCTGTCAGAGACGGTTATTCAAACTTCAAACCCCATCTTATTATTTTATTTCTTTATTTCTTTGTTTTTTTTTTCTTTCTTTTTTTAAATTTTATATATGCCTATGTTGCCACTACCATTTTCACTAATTACATCCTTTTTCATCGTATTTATACTATCTTTTTTTATCTCGATATTATGAATGACACGTGGCTCCGTTCTTAGTGACATGACCGAGCGAGTTGCGATGGGGATCACACCCTATAATTGAGATGATGTCATGATATATAAACCATGTTAATGGGGAACTAAGATGACATGATGAGATGCAACGTTATAATGAGAGACATTGATTTCGAGTAAAGGTAAGGTCGAGCTAAAATTACTTGACATAACGTAGAGGCAAGTTGGTTATGTCACAAATGATTGAGCATACACGCCCATGTAGCGTGTGTAACCGAACAAACTTGAATTTTTATAAATTGTGCTCGATGGATGAAAGAGAAATCTTGTCTAAGGTCCGATATGAAACTATAAAATAAAGATAAAAACTTTTACTATAAAATTTTATTTTGAAAATATAATTTTATTTACTTTCCAAAATAAAAAGTTTAAAGAAAAAAAAAAAGAGATTAAAAAAGTAAATGGAAAATGAAATGAAAAGGTAGTGGCAGAACGGTAAATAAAAGGGTAATATTGGTTATTAAAAAGCCCATAAGCTCATTAAGCTTCTTATTCTGTGCTTCCAACCCTTCCATTTTTCACGGAAATGTTTCTCCTCTAGTTTCCCGGGCTTTGCCAGAGAAAAAAAGAGAACACTTTCCTCCGCCGTTCGCGGTGGTCCGATCTAAGATCCGATCGCCGTATTTGATCGGAGCCTTCGGCGAGTATCCAATTCAGATATATTCAGTTCTTCTTCTTCTTCTTACTTTTTGTTGTTTCTTGTCTGATTTATCCAGCGGTTTGTACTTCTCTTTCAGTTCGTTTCATTCACTTGTTACAGAGCCTCGAGGAATTCTCCGTTTTCTAGACTTTTGTCTTTCTTGTCCGACTTGTCTACTTCGAAGTTGCGAAAGAGGTTTTTACACTCAGTTTATTTTGTGTTTCGATCCTTGGACTCGAGTTGATTTCTGTTGGAAGATTTGTGTCTGTTCCTGTGAAGTTTTGTTTGTGATTGTAATTGAATCGTGTTCTTCTTGTGATAGACGGAGGCAATTCGAAAGAATTGCTTACTGA

mRNA sequence

GCCTAATCTTTCCTTCTATCTGCCTGTGAATTGAAGCTTCTGTTCTAGCGAGACGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGAAGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTTTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGCTACGACGAGAGAGGCACAAAATATGAACTACCCAACTATGTTTTGATTTCCCGGGCTTTGCCAGAGAAAAAAAGAGAACACTTTCCTCCGCCGTTCGCGGTGGTCCGATCTAAGATCCGATCGCCGTATTTGATCGGAGCCTTCGGCGAGTATCCAATTCAGATATATTCAGTTCTTCTTCTTCTTCTTACTTTTTGTTGTTTCTTGTCTGATTTATCCAGCGGTTTGTACTTCTCTTTCAGTTCGTTTCATTCACTTGTTACAGAGCCTCGAGGAATTCTCCGTTTTCTAGACTTTTGTCTTTCTTGTCCGACTTGTCTACTTCGAAGTTGCGAAAGAGGTTTTTACACTCAGTTTATTTTGTGTTTCGATCCTTGGACTCGAGTTGATTTCTGTTGGAAGATTTGTGTCTGTTCCTGTGAAGTTTTGTTTGTGATTGTAATTGAATCGTGTTCTTCTTGTGATAGACGGAGGCAATTCGAAAGAATTGCTTACTGA

Coding sequence (CDS)

ATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGAAGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTTTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGCTACGACGAGAGAGGCACAAAATATGAACTACCCAACTATGTTTTGATTTCCCGGGCTTTGCCAGAGAAAAAAAGAGAACACTTTCCTCCGCCGTTCGCGGTGGTCCGATCTAAGATCCGATCGCCGTATTTGATCGGAGCCTTCGGCGAGTATCCAATTCAGATATATTCAGTTCTTCTTCTTCTTCTTACTTTTTGTTGTTTCTTGTCTGATTTATCCAGCGGTTTGTACTTCTCTTTCAGTTCGTTTCATTCACTTGTTACAGAGCCTCGAGGAATTCTCCGTTTTCTAGACTTTTGTCTTTCTTGTCCGACTTGTCTACTTCGAAGTTGCGAAAGAGGTTTTTACACTCAGTTTATTTTGTGTTTCGATCCTTGGACTCGAGTTGATTTCTGTTGGAAGATTTGTGTCTGTTCCTGTGAAGTTTTGTTTGTGATTGTAATTGAATCGTGTTCTTCTTGTGATAGACGGAGGCAATTCGAAAGAATTGCTTACTGA

Protein sequence

MGCAGSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALRAAAEAELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVLISRALPEKKREHFPPPFAVVRSKIRSPYLIGAFGEYPIQIYSVLLLLLTFCCFLSDLSSGLYFSFSSFHSLVTEPRGILRFLDFCLSCPTCLLRSCERGFYTQFILCFDPWTRVDFCWKICVCSCEVLFVIVIESCSSCDRRRQFERIAY
Homology
[Close]
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-19
Identity = 53/104 (50.96%), Postives = 65/104 (62.50%), Query Frame = 0 

Query: 5   GSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALRAAAE 64
           G+    G     K  KPK WK   P+T  QL   R+EFWDTAP + GRKEIWDAL+AAA+
Sbjct: 21  GTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQ 80

Query: 65  A----ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L
Sbjct: 81  AFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCL 123

[Close]
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-19
Identity = 58/121 (47.93%), Postives = 72/121 (59.50%), Query Frame = 0 

Query: 2   GCAG--SSQTNGEGS------------IKKIRKPKSWKHPQPITRFQLVQLREEFWDTAP 61
           GC G   ++T G GS            +KK  KPK WK   P+T  QL   R+EFWDTAP
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKK-DKPK-WKSDYPMTEGQLRSKRDEFWDTAP 62

Query: 62  HYGGRKEIWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYV 105
            + GRKEIWDAL+AAA A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y 
Sbjct: 63  AFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYC 121

[Close]
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-19
Identity = 57/114 (50.00%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 4   AGSSQTNGEGS---------IKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKE 63
           +GS   N EG+         +KK  KPK WK   P+T  QL   R+EFWDTAP + GRKE
Sbjct: 12  SGSLNENSEGTGVALGRNQPLKK-EKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCL 123

[Close]
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match: Q8WUN7 (Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-19
Identity = 57/114 (50.00%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 4   AGSSQTNGEGS---------IKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKE 63
           +GS   N EG+         +KK  KPK WK   P+T  QL   R+EFWDTAP + GRKE
Sbjct: 12  SGSLNENSEGTGVALGRNQPLKK-EKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCL 123

[Close]
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match: Q6PGH0 (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.0e-19
Identity = 53/104 (50.96%), Postives = 64/104 (61.54%), Query Frame = 0 

Query: 5   GSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALRAAAE 64
           G+    G     K  KPK WK   P+T  QL   R+EFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCL 123

[Close]
BLAST of CmaCh16G004320 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-47
Identity = 83/104 (79.81%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 1   MGCAGSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+Q+  +GS+KKIRKPK WKH QPIT+ +L++LREEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           AAAEA++SLAQAI+DSAGVI+QN DLT+CYDERG KYELP YVL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVL 104

[Close]
BLAST of CmaCh16G004320 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-40
Identity = 78/105 (74.29%), Postives = 93/105 (88.57%), Query Frame = 0 

Query: 1   MGCAGSSQTNGEGSIKKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGC+ SS+T  EG  +KIR+PK+WKHPQPI+R +L Q+REEFWDTAPHYGG+KEIWDALR
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 61  AAAEA-ELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           AAAE  +LSLAQ I++SAGVI+QN DLTICYDE+G+KYELP YVL
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVL 104

[Close]
BLAST of CmaCh16G004320 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-39
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 0 

Query: 1   MGCAGSSQTNGEGSI--KKIRKPKSWKHPQPITRFQLVQLREEFWDTAPHYGGRKEIWDA 60
           MGC GSSQ   EG    KKI KPK W H +PITR QL  +REEFWDT+PHYGG++EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 61  LRAAAEAELSLAQAIIDSAGVIIQNADLTICYDERGTKYELPNYVL 105
           LRAAAEA+L LAQ I+DSAGVI+QN DLT+C+DERG +YELP YVL
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVL 106

The following BLAST results are available for this feature:
BLAST of CmaCh16G004320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DG434.1e-1950.96Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1[more]
Q4V8W75.4e-1947.93Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1[more]
Q5EAE35.4e-1950.00Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1[more]
Q8WUN75.4e-1950.00Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2[more]
Q6PGH07.0e-1950.96Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=... [more]
BLAST of CmaCh16G004320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G53400.16.2e-4779.81Ubiquitin domain-containing protein [more]
AT1G16960.11.1e-4074.29Ubiquitin domain-containing protein [more]
AT5G45740.11.6e-3969.81Ubiquitin domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032752DC-UbP/UBTD2, N-terminal domainPFAMPF16455UBDcoord: 16..105
e-value: 3.1E-29
score: 101.1
IPR038169DC-UbP/UBTD2, N-terminal domain superfamilyGENE3D1.20.225.20coord: 31..104
e-value: 1.5E-25
score: 91.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR13609:SF25BINDING PROTEIN, PUTATIVE-RELATEDcoord: 1..106
IPR039869Ubiquitin domain-containing protein 1/2PANTHERPTHR13609UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDcoord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G004320.1CmaCh16G004320.1mRNA