CmaCh16G003380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G003380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Caspase-6 protein
Location	Cma_Chr16: 1587269 .. 1587995 (-)
RNA-Seq Expression	CmaCh16G003380
Synteny	CmaCh16G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGTACTTCATAAGTTTCGAAACTCGCTGCTTGGTTTCCTTTCGAAACGAATTGATGAACGAATTACGGAGGAATAAATTCCGTTGAATTGTGATTTATTTGATGCTCGATGTTCGTTCTTTTTTCCGTGTTGATCTCTGTTTACTATTGATTTCGGCTTCTGTAAATTTAAAATCATCTGGAGATTGAATTTCTGTTGTTTATGTTTTTATCTTAATTTCAGATTAATTTTCATGCATTTTAAAGTTTTTGTTATCTGTCAAGCTATTTGTGATTGCATTGTAAAAGAGTTGCATAAATCTTGTTGGCAATTATCCTTTACATTCCGACGCAACACTAGACTCAACCATTTCAGAATTATCACCGCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGTTAATCACACGAACAGAAACCCCACCAATATTTTCAGAGTCTTCCCTATTCCATCTGTTTTAAGAAAAATTTCTCACATTATTACTTATGATCTTTTCTCTCTCTTGATCATCTTTGATTGGAAGGCTCTTTTCTGA

mRNA sequence

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Coding sequence (CDS)

ATGGCTTGGCGCTCTTCTGGATCTCTATCTCGCGCGCTCATTTCCTCTGTTAGGTTTTCTTCTCTCCGATCGTCTCCTTCTCTTCCTCGGCTTCGCCTGCCACCTCTCACCGCTCGACCTCGCCTTCAATCTCGTCGGCTTGCATTTTCGACTTCCAGGAAACAGCCTATCAAGTTTCTTATTATCTTAATTAAGGCCTTCTCAACTCTGCTGAGCTCAAAGGCTCTTTTCTGA

Protein sequence

MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRKQPIKFLIILIKAFSTLLSSKALF

Homology

[Close]

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL
Match: A0A6J1J1R9 (uncharacterized protein LOC111482625 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482625 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.0e-17
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL
Match: A0A6J1J861 (uncharacterized protein LOC111482625 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482625 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.0e-17
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL
Match: A0A6J1JA18 (uncharacterized protein LOC111482625 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482625 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.0e-17
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL
Match: A0A6J1J270 (uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWR SGSLSR+LIS+VR SSLRS+PSLPRLR PPL ARPRLQSRRL+FSTSR
Sbjct: 1  MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL
Match: A0A6J1IZB9 (uncharacterized protein LOC111482036 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482036 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWR SGSLSR+LIS+VR SSLRS+PSLPRLR PPL ARPRLQSRRL+FSTSR
Sbjct: 1  MAWRPSGSLSRSLISTVRASSLRSAPSLPRLRPPPLAARPRLQSRRLSFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. NCBI nr
Match: XP_022984255.1 (uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. NCBI nr
Match: XP_022984256.1 (uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984257.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984259.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984260.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984261.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984262.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984263.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984264.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984265.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984266.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984267.1 uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. NCBI nr
Match: XP_022984268.1 (uncharacterized protein LOC111482625 isoform X3 [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-16
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. NCBI nr
Match: KAG7014957.1 (hypothetical protein SDJN02_22588, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 4.0e-15
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSR 54
          MAWRSSGSLSRALISSVR SSLRSSPSLPRLRLPP+TARPRLQSRRL+FSTSR
Sbjct: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPRLRLPPITARPRLQSRRLSFSTSR 53

[Close]

BLAST of CmaCh16G003380 vs. NCBI nr
Match: XP_023551740.1 (uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023551741.1 uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023551742.1 uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 2.9e-13
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MAWRSSGSLSRALISSVRFSSLRSSPSLPRLRLPPLTARPRLQSRRLAFSTSRK 55
          MAWRSSGSLSRALISSVR SSLRSSPSLP LR P LTARPRLQSRRL+FSTSRK
Sbjct: 1  MAWRSSGSLSRALISSVRSSSLRSSPSLPWLRPPSLTARPRLQSRRLSFSTSRK 54

The following BLAST results are available for this feature:

BLAST of CmaCh16G003380 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1R9	6.0e-17	100.00	uncharacterized protein LOC111482625 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J861	6.0e-17	100.00	uncharacterized protein LOC111482625 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JA18	6.0e-17	100.00	uncharacterized protein LOC111482625 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J270	1.2e-12	84.91	uncharacterized protein LOC111482036 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IZB9	1.2e-12	84.91	uncharacterized protein LOC111482036 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh16G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984255.1	1.2e-16	100.00	uncharacterized protein LOC111482625 isoform X1 [Cucurbita maxima]	[more]
XP_022984256.1	1.2e-16	100.00	uncharacterized protein LOC111482625 isoform X2 [Cucurbita maxima] >XP_022984257...	[more]
XP_022984268.1	1.2e-16	100.00	uncharacterized protein LOC111482625 isoform X3 [Cucurbita maxima]	[more]
KAG7014957.1	4.0e-15	94.34	hypothetical protein SDJN02_22588, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023551740.1	2.9e-13	90.74	uncharacterized protein LOC111809622 isoform X3 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of CmaCh16G003380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G003380.1	CmaCh16G003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane